Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001466

Physical Location & Seq

Genomic Coordinates Reverse (-)

11737637 .. 11739596

Gene Structure 1960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032165

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCTTATAACTGGGTTCAATGTAGTGGGGTTCAATTGGGTTTCATTGCAGGCTGCAACCGAGCTCGAACACATAGTCATGGATTGGCTAGCAGACATGCTTCAGCTTCCCAAGTCGTTTCATTTCTCTGGTAACGGTGGCGGTGTGTTACATGGGAGTACTTGCGAAGCCATTGTTTGCACAATGGCAGCTGCCAGGGACCAAATGCTAAGCCGAATTGGGAGCGAGAATTTGGGAAAGCTTGTTGTGTATGGTTCAGACCAAACACATTGCACCCTTCAAAAAGCTACCCAAATTGTTGGAATCAACCCGGAGAACTTCAGGGCCATCAAGACTACAAAGTCAACTGGATTTGCGCTATCACCTGAAATGCTAAGACTGACAATAAGTTCAGACAGAGCAAAAGGGCTAGTGCCACTTTTTCTATGTGCCACAATGGGCACAACCGCAACCACTGCTATAGATCCATTGGGGGCAGTGTGCAATGTAGCCAAAGATTATGGCATGTGGGTTCATGTGGATGCTGCATATGCAGGAAGTGCTTGCATTTGTCCAGAGTTTCGTCATTTCATTGATGGCGTTGAAGCACTAACACGAAGGTTCCGGGCAGTGAAGCTATGGCTTGTGCTAAGAAGCTACAACATGGCTAACCTTAGAAAATTTATTCGAAGCCATGTCAAAATGGCCAAGATTTTTGAAGGGCTTGTGAGAATGGACAATAGGTTTGAGATTGTGGTTCCTAGAAACTTCTCCTTGGTCTATTTCAGGATTTCACTATCCGCAATAGTTAGTGATGATCATTATGATGGTGAGGAGTACAATATGGTAAACAAGATCAATCACAAGTTGCTGGAGGCCATCAATGCATCAGGCTCTGTGTTCATGACTCATGCTGTGGTTGGAGGTGTCTACGTGCTACGGTGCGCAGTTGGTGCAACTCTAACTGAGGAAAAGCACATTCGAGAGGCCTGGAAGGCGGTGCAGGGCCAGGCACATACAATTCTCTCAGCATGTATTGTTGACTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 ko00380 ko00901 ko00950 ko00965 ko01100 ko01110 ko04726 ko04728 ko05030 ko05031 ko05034 map00350 map00360 map00380 map00901 map00950 map00965 map01100 map01110 map04726 map04728 map05030 map05031 map05034

Pfam Domains

Protein Families

Pyridoxal_deC

Protein Analysis

344

Amino Acids

37.73

Weight (kDa)

8.34

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyridoxal_deC	PF00282	1 - 196	7.4e-46	Pyridoxal-dependent decarboxylase conserved domain
Pyridoxal_deC	PF00282	197 - 257	1.2e-11	Pyridoxal-dependent decarboxylase conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09470 FvH4_3g09472 FvH4_3g09540
malus_domestica	MD01G1040200.v1.1 MD10G1256600.v1.1 MD10G1256900.v1.1
prunus_persica	Prupe.4G087100_v2.0.a1 Prupe.6G202600_v2.0.a1
pyrus_communis	pycom01g06780 pycom10g21240
rosa_chinensis	RchiOBHm_Chr1g0324861 RchiOBHm_Chr5g0015041 RchiOBHm_Chr5g0015051 RchiOBHm_Chr6g0247151
rosa_laevigata	RLG00000030170 RLG00000032163 RLG00000032164 RLG00000032165
rosa_multiflora	Rmu_sc0004577.1_g000016 Rmu_sc0004889.1_g000027 Rmu_sc0009777.1_g000012 Rmu_sc0011258.1_g000012 Rmu_sc0041940.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061480 Rroxscaffold_1G00061490 Rroxscaffold_4G00325150 Rroxscaffold_7G00214310
rosa_rugosa	Rorug01G0048400 Rorug05G0023300 Rorug05G0023600.1 Rorug05G0523300
rosa_samantha	Rh1AG064600 Rh1BG053500 Rh1CG066100 Rh1CG066300 Rh1DG070800 Rh1DG070900 Rh5AG118300 Rh5BG115600 Rh5BG115700 Rh5BG115900 Rh5BG116200 Rh5CG126900 Rh5CG127100 Rh5DG115000 Rh5DG115100 Rh6AG038000 Rh6BG032900
rosa_wichuraiana	Rw1G005430 Rw5G010200 Rw5G010220 Rw6G003240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	8
AasI	GACNNNNNNGTC	1 cut(s)	340
Acc16I	TGCGCA	1 cut(s)	925
AccI	GTMKAC	1 cut(s)	909
AciI	CCGC	4 cut(s)	141, 447, 780, 977
AclWI	GGATC	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	684
AcsI	RAATTY	2 cut(s)	229, 659
AcuI	CTGAAG	2 cut(s)	86, 304
AfaI	GTAC	2 cut(s)	160, 818
AgsI	TTSAA	5 cut(s)	19, 34, 281, 584, 698
AjnI	CCWGG	3 cut(s)	194, 968, 987
AluBI	AGCT	7 cut(s)	64, 106, 191, 241, 287, 616, 636
AluI	AGCT	7 cut(s)	64, 106, 191, 241, 287, 616, 636
Alw21I	GWGCWC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	458
AlwNI	CAGNNNCTG	1 cut(s)	875
AoxI	GGCC	5 cut(s)	324, 684, 855, 966, 985
ApeKI	GCWGC	4 cut(s)	53, 188, 191, 524
ApoI	RAATTY	2 cut(s)	229, 659
ArsI	GACNNNNNNTTYG	4 cut(s)	60, 92, 707, 739
AspLEI	GCGC	2 cut(s)	358, 926
AspS9I	GGNCC	3 cut(s)	199, 324, 985
AsuC2I	CCSGG	2 cut(s)	311, 605
AsuHPI	GGTGA	2 cut(s)	354, 821
AsuII	TTCGAA	1 cut(s)	667
AsuNHI	GCTAGC	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	686
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	4 cut(s)	40, 178, 200, 511
BccI	CCATC	4 cut(s)	335, 569, 800, 866
BciT130I	CCWGG	3 cut(s)	196, 970, 989
BclI	TGATCA	1 cut(s)	796
BcnI	CCSGG	2 cut(s)	311, 605
BfaI	CTAG	3 cut(s)	89, 410, 741
BfmI	CTRYAG	1 cut(s)	459
BglI	GCCNNNNNGGC	1 cut(s)	974
BisI	GCNGC	4 cut(s)	54, 189, 192, 525
BlpI	GCTNAGC	1 cut(s)	209
BlsI	GCNGC	4 cut(s)	55, 190, 193, 526
BmcAI	AGTACT	1 cut(s)	160
Bme1390I	CCNGG	5 cut(s)	196, 311, 605, 970, 989
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	3 cut(s)	199, 324, 985
BmiI	GGNNCC	3 cut(s)	200, 602, 738
BmrFI	CCNGG	5 cut(s)	196, 311, 605, 970, 989
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	2 cut(s)	511, 875
BmtI	GCTAGC	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	872
Bpu1102I	GCTNAGC	1 cut(s)	209
Bpu14I	TTCGAA	1 cut(s)	667
BpuMI	CCSGG	2 cut(s)	311, 605
BsaAI	YACGTR	1 cut(s)	913
BsaJI	CCNNGG	2 cut(s)	195, 753
Bse1I	ACTGG	2 cut(s)	16, 352
Bse3DI	GCAATG	3 cut(s)	44, 268, 490
BseBI	CCWGG	3 cut(s)	196, 970, 989
BseDI	CCNNGG	2 cut(s)	195, 753
BseGI	GGATG	1 cut(s)	526
BseMI	GCAATG	3 cut(s)	44, 268, 490
BseMII	CTCAG	2 cut(s)	936, 1020
BseNI	ACTGG	2 cut(s)	16, 352
BseRI	GAGGAG	1 cut(s)	827
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	4 cut(s)	40, 178, 200, 511
BsgI	GTGCAG	1 cut(s)	1001
BshFI	GGCC	5 cut(s)	326, 686, 857, 968, 987
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	311, 604
BslFI	GGGAC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	5 cut(s)	326, 686, 857, 968, 987
Bsp119I	TTCGAA	1 cut(s)	667
Bsp1286I	GDGCHC	2 cut(s)	66, 443
Bsp143I	GATC	3 cut(s)	463, 796, 834
Bsp1720I	GCTNAGC	1 cut(s)	209
BspACI	CCGC	4 cut(s)	141, 447, 780, 977
BspANI	GGCC	5 cut(s)	326, 686, 857, 968, 987
BspCNI	CTCAG	2 cut(s)	937, 1019
BspHI	TCATGA	1 cut(s)	882
BspLI	GGNNCC	3 cut(s)	200, 602, 738
BspOI	GCTAGC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	458
BspT104I	TTCGAA	1 cut(s)	667
BsrDI	GCAATG	3 cut(s)	44, 268, 490
BsrI	ACTGG	2 cut(s)	16, 352
BssECI	CCNNGG	2 cut(s)	195, 753
BssMI	GATC	3 cut(s)	463, 796, 834
BssT1I	CCWWGG	1 cut(s)	753
Bst2UI	CCWGG	3 cut(s)	196, 970, 989
Bst4CI	ACNGT	2 cut(s)	137, 921
BstAPI	GCANNNNNTGC	3 cut(s)	455, 539, 932
BstBAI	YACGTR	1 cut(s)	913
BstBI	TTCGAA	1 cut(s)	667
BstC8I	GCNNGC	3 cut(s)	51, 90, 544
BstDEI	CTNAG	6 cut(s)	209, 374, 629, 653, 945, 1006
BstF5I	GGATG	1 cut(s)	526
BstHHI	GCGC	2 cut(s)	358, 926
BstKTI	GATC	3 cut(s)	466, 799, 837
BstMBI	GATC	3 cut(s)	463, 796, 834
BstMWI	GCNNNNNNNGC	6 cut(s)	455, 530, 539, 863, 932, 974
BstNI	CCWGG	3 cut(s)	196, 970, 989
BstNSI	RCATGY	3 cut(s)	100, 508, 1014
BstSCI	CCNGG	5 cut(s)	194, 309, 603, 968, 987
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	443
BstV1I	GCAGC	4 cut(s)	40, 178, 200, 511
BstX2I	RGATCY	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	463
BsuRI	GGCC	5 cut(s)	326, 686, 857, 968, 987
BtsCI	GGATG	1 cut(s)	526
BtsI	GCAGTG	3 cut(s)	453, 483, 615
BtsIMutI	CAGTG	3 cut(s)	453, 483, 615
Cac8I	GCNNGC	3 cut(s)	51, 90, 544
CaiI	CAGNNNCTG	1 cut(s)	875
CciI	TCATGA	1 cut(s)	882
CfoI	GCGC	2 cut(s)	358, 926
Cfr13I	GGNCC	3 cut(s)	199, 324, 985
Csp6I	GTAC	2 cut(s)	159, 817
CviQI	GTAC	2 cut(s)	159, 817
DdeI	CTNAG	6 cut(s)	209, 374, 629, 653, 945, 1006
DpnI	GATC	3 cut(s)	465, 798, 836
DpnII	GATC	3 cut(s)	463, 796, 834
DrdI	GACNNNNNNGTC	1 cut(s)	340
DseDI	GACNNNNNNGTC	1 cut(s)	340
EaeI	YGGCCR	1 cut(s)	684
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	753
Eco147I	AGGCCT	1 cut(s)	968
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	86, 304
EcoICRI	GAGCTC	1 cut(s)	64
EcoRII	CCWGG	3 cut(s)	194, 968, 987
EcoT14I	CCWWGG	1 cut(s)	753
EcoT22I	ATGCAT	1 cut(s)	868
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	753
FaqI	GGGAC	1 cut(s)	212
FauNDI	CATATG	1 cut(s)	529
FbaI	TGATCA	1 cut(s)	796
FblI	GTMKAC	1 cut(s)	909
Fnu4HI	GCNGC	4 cut(s)	54, 189, 192, 525
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	4 cut(s)	54, 189, 192, 525
FspBI	CTAG	3 cut(s)	89, 410, 741
FspI	TGCGCA	1 cut(s)	925
GlaI	GCGC	2 cut(s)	357, 925
GluI	GCNGC	4 cut(s)	54, 189, 192, 525
GsuI	CTGGAG	1 cut(s)	872
HaeIII	GGCC	5 cut(s)	326, 686, 857, 968, 987
HapII	CCGG	2 cut(s)	311, 604
HhaI	GCGC	2 cut(s)	358, 926
Hin6I	GCGC	2 cut(s)	356, 924
HinP1I	GCGC	2 cut(s)	356, 924
HincII	GTYRAC	2 cut(s)	345, 1021
HindII	GTYRAC	2 cut(s)	345, 1021
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	3 cut(s)	303, 886, 1022
HpaII	CCGG	2 cut(s)	311, 604
HphI	GGTGA	2 cut(s)	354, 821
Hpy166II	GTNNAC	4 cut(s)	345, 829, 910, 1021
Hpy188I	TCNGA	2 cut(s)	259, 394
Hpy188III	TCNNGA	5 cut(s)	331, 554, 766, 883, 962
Hpy8I	GTNNAC	4 cut(s)	345, 829, 910, 1021
HpyAV	CCTTC	4 cut(s)	287, 591, 692, 967
HpyCH4III	ACNGT	2 cut(s)	137, 921
HpyCH4IV	ACGT	1 cut(s)	912
HpyF10VI	GCNNNNNNNGC	6 cut(s)	455, 530, 539, 863, 932, 974
HpyF3I	CTNAG	6 cut(s)	209, 374, 629, 653, 945, 1006
HpySE526I	ACGT	1 cut(s)	912
HspAI	GCGC	2 cut(s)	356, 924
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	3 cut(s)	463, 796, 834
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	4 cut(s)	40, 178, 200, 511
LweI	GCATC	2 cut(s)	511, 875
MaeI	CTAG	3 cut(s)	89, 410, 741
MaeII	ACGT	1 cut(s)	912
MaeIII	GTNAC	2 cut(s)	131, 147
MalI	GATC	3 cut(s)	465, 798, 836
MboI	GATC	3 cut(s)	463, 796, 834
MfeI	CAATTG	1 cut(s)	34
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	2 cut(s)	66, 443
MlsI	TGGCCA	1 cut(s)	686
MluCI	AATT	6 cut(s)	34, 216, 229, 294, 659, 999
MluNI	TGGCCA	1 cut(s)	686
MlyI	GAGTC	2 cut(s)	880, 1016
MmeI	TCCRAC	2 cut(s)	280, 880
MnlI	CCTC	5 cut(s)	805, 847, 896, 940, 958
Mox20I	TGGCCA	1 cut(s)	686
Mph1103I	ATGCAT	1 cut(s)	868
MscI	TGGCCA	1 cut(s)	686
MslI	CAYNNNNRTG	3 cut(s)	77, 519, 804
Msp20I	TGGCCA	1 cut(s)	686
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	2 cut(s)	311, 604
MspR9I	CCNGG	5 cut(s)	196, 311, 605, 970, 989
MunI	CAATTG	1 cut(s)	34
MvaI	CCWGG	3 cut(s)	196, 970, 989
MwoI	GCNNNNNNNGC	6 cut(s)	455, 530, 539, 863, 932, 974
NciI	CCSGG	2 cut(s)	311, 605
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	3 cut(s)	463, 796, 834
NheI	GCTAGC	1 cut(s)	88
NlaIV	GGNNCC	3 cut(s)	200, 602, 738
NsbI	TGCGCA	1 cut(s)	925
NsiI	ATGCAT	1 cut(s)	868
NspI	RCATGY	3 cut(s)	100, 508, 1014
NspV	TTCGAA	1 cut(s)	667
PagI	TCATGA	1 cut(s)	882
PceI	AGGCCT	1 cut(s)	968
PfeI	GAWTC	1 cut(s)	303
PkrI	GCNGC	4 cut(s)	55, 190, 193, 526
PleI	GAGTC	2 cut(s)	880, 1016
PpsI	GAGTC	2 cut(s)	880, 1016
Ppu21I	YACGTR	1 cut(s)	913
PsiI	TTATAA	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	66
Psp6I	CCWGG	3 cut(s)	194, 968, 987
PspGI	CCWGG	3 cut(s)	194, 968, 987
PspN4I	GGNNCC	3 cut(s)	200, 602, 738
PspPI	GGNCC	3 cut(s)	199, 324, 985
PstNI	CAGNNNCTG	1 cut(s)	875
PsuI	RGATCY	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	2 cut(s)	160, 818
RsaNI	GTAC	2 cut(s)	159, 817
RseI	CAYNNNNRTG	3 cut(s)	77, 519, 804
SacI	GAGCTC	1 cut(s)	66
SatI	GCNGC	4 cut(s)	54, 189, 192, 525
Sau3AI	GATC	3 cut(s)	463, 796, 834
Sau96I	GGNCC	3 cut(s)	199, 324, 985
ScaI	AGTACT	1 cut(s)	160
SchI	GAGTC	2 cut(s)	880, 1016
ScrFI	CCNGG	5 cut(s)	196, 311, 605, 970, 989
SduI	GDGCHC	2 cut(s)	66, 443
SfaNI	GCATC	2 cut(s)	511, 875
SfcI	CTRYAG	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	667
SinI	GGWCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	3 cut(s)	77, 519, 804
Sse9I	AATT	6 cut(s)	34, 216, 229, 294, 659, 999
SseBI	AGGCCT	1 cut(s)	968
SsiI	CCGC	4 cut(s)	141, 447, 780, 977
SspMI	CTAG	3 cut(s)	89, 410, 741
SstI	GAGCTC	1 cut(s)	66
StuI	AGGCCT	1 cut(s)	968
StyD4I	CCNGG	5 cut(s)	194, 309, 603, 968, 987
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	2 cut(s)	137, 921
TaiI	ACGT	1 cut(s)	915
TaqI	TCGA	3 cut(s)	66, 667, 961
TasI	AATT	6 cut(s)	34, 216, 229, 294, 659, 999
TatI	WGTACW	2 cut(s)	158, 816
TfiI	GAWTC	1 cut(s)	303
TscAI	CASTG	3 cut(s)	460, 483, 615
TseI	GCWGC	4 cut(s)	53, 188, 191, 524
TspDTI	ATGAA	5 cut(s)	33, 110, 503, 559, 871
TspRI	CASTG	3 cut(s)	460, 483, 615
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	2 cut(s)	229, 659
XceI	RCATGY	3 cut(s)	100, 508, 1014
XmiI	GTMKAC	1 cut(s)	909
XspI	CTAG	3 cut(s)	89, 410, 741
ZrmI	AGTACT	1 cut(s)	160
Zsp2I	ATGCAT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.