RLG00000030170

Tyrosine dopa decarboxylase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
56891031 .. 56892557
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030170

Sequence Viewer

Length: 1527 bp
ATGGGTAGCCTCCCATTCCACCATGATTCACATGAAACCACCTCTGCCCCCATCACCAAATCCCTAGACCCTGAAGAATTGAGGAAATACGGCCACATGGTCGTAGACTTCATCGCAGATTATTACCAAAACATAGAGAAATACCCAGTTCTAAGCCGAGTGCAACCTGGTTATTTGAGAAAATGCCTACCAGATTCTGCCCCATATGACCCTGAACCCATATCAATCATCCTTAAAGATGTTCAGGATCACATTGTTCCTGGCCTAACACACTGGCAAAGTCCAAATTTCTTTGCATACTTCTCTTCAACTGCTAGCACTGCTGGGTTTCTCGGTGAAATGCTCACCACTGGATTTAATGTGGTGGGGTTCAACTGGGTTTCATCACCAGCAGCAACCGAGCTCGAAAACATAGTCATGGATTGGTTGGCAGACATGCTTCAGCTTCCCAAGTCTTTCCATTTCTCTGGCAACGGAGGCGGTGTTTTACATGGGAGTACTTGCGAGGCTATTGTTTGCACAATGGCAGCTGCCAGGGACCAAATGCTAAGCCGAATTGGTAGCGAGAATTTGGGAAATCTTGTTGTGTATGGTTCAGACCAAACACATAGCACACTTCAGAAAGCTTCCCAAATTCTTGGAATCAACATGGAGAACTTCCGGGCCATCAAGACTACAAAGTCAAGTGAATTTGCACTATCACCTGAGATGCTAAGATTGACAATAAGTTCAGACCTAGAAGAAGGGCTAGTGCCACTCTTTGTATGTGCCACAATAGGCACAACCGCAACCACTGCTATTGATCCATTGAAGGCACTATGTCACGTGGCAAAAGAATACGGCGTGTGGGTTCATGTGGATGGCGCATATGCTGGAAGTGCATGCATTTGTCCAGAGTTTCGACATTTCATTGATGGCGTAGAGGGCGCAAACTCTTTTTCTTTTAACCCCCATAAGTGGTTATTCACTGGAATGGATTGCTGCTGCCTTTGGGTTAAGAATCCGAGTGTATTGGTACTGTCATTGTCAACGAATCCAGAGTTTTTGAGGAACACAGTCAGTGACTCAAAGCAAGTTGTGGACTACAAAGACTGGCAAATAGCACTGAGCCGGAGGTTCCGAGCATTGAGGGTATGGCTTGTGCTAAGAAGCTACGGCGTGGCCAACCTTCGAAACTTTATTCGTAGCCATGTCAAAATGGCCAAGACTTTTGAAGGGCTTGTGAGAATGGACAAGAGGTTTGAGATTGTGGTGCCTAGAGACTTCTCCTTGGTCTGCTTTAGAATTTCACCATCAGCATTGATCAGTAGGGATGAGGATGGTGAGATCGGTATGATAAACGAGGTCAACTGCAAGCTGTTAGATGCCATCAACGCATCAGGTAAAGCATACATGACCCATGCTGTGGTTGGAGGTATCTTTCTGCTGCGGTGCGCCATTGGTGCTACTCTGACAGAAGAAAAGCACATGGTCCAGGCTTGGAAGGTGGTGCAAGACCATGCACAAGCCATCCTCAATATGCATTGA

Protein Analysis

509

Amino Acids

56.4

Weight (kDa)

6.14

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 56 - 429 3e-112 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 679
AccB1I GGYRCC 1 cut(s) 1252
AccB7I CCANNNNNTGG 1 cut(s) 1405
AccI GTMKAC 1 cut(s) 105
AciI CCGC 3 cut(s) 480, 786, 1429
AclWI GGATC 2 cut(s) 255, 797
AcoI YGGCCR 3 cut(s) 91, 1161, 1200
AcsI RAATTY 5 cut(s) 286, 568, 633, 689, 1284
AcuI CTGAAG 3 cut(s) 93, 425, 602
AcvI CACGTG 1 cut(s) 826
AfaI GTAC 2 cut(s) 499, 1017
AfiI CCNNNNNNNGG 2 cut(s) 957, 1405
AgsI TTSAA 4 cut(s) 309, 373, 811, 1214
AjnI CCWGG 4 cut(s) 166, 259, 533, 1473
AluBI AGCT 6 cut(s) 403, 445, 530, 626, 1152, 1357
AluI AGCT 6 cut(s) 403, 445, 530, 626, 1152, 1357
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 1 cut(s) 1254
AlwI GGATC 2 cut(s) 255, 797
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 5 cut(s) 91, 262, 663, 1161, 1200
ApeKI GCWGC 6 cut(s) 392, 527, 530, 981, 984, 1426
ApoI RAATTY 5 cut(s) 286, 568, 633, 689, 1284
ArsI GACNNNNNNTTYG 4 cut(s) 399, 431, 1223, 1255
AspLEI GCGC 3 cut(s) 866, 929, 1436
AspS9I GGNCC 3 cut(s) 538, 663, 1471
AsuC2I CCSGG 1 cut(s) 662
AsuHPI GGTGA 7 cut(s) 46, 337, 347, 378, 693, 1281, 1334
AsuII TTCGAA 1 cut(s) 1171
AsuNHI GCTAGC 1 cut(s) 314
AvaII GGWCC 2 cut(s) 538, 1471
BalI TGGCCA 2 cut(s) 1163, 1202
BanI GGYRCC 1 cut(s) 1252
BanII GRGCYC 1 cut(s) 405
BbrPI CACGTG 1 cut(s) 826
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 6 cut(s) 404, 517, 539, 968, 971, 1413
BccI CCATC 8 cut(s) 59, 674, 854, 908, 1300, 1313, 1376, 1517
BceAI ACGGC 3 cut(s) 106, 856, 1171
BciT130I CCWGG 4 cut(s) 168, 261, 535, 1475
BclI TGATCA 1 cut(s) 1302
BcnI CCSGG 1 cut(s) 662
BcoDI GTCTC 1 cut(s) 1254
BfaI CTAG 5 cut(s) 65, 315, 737, 749, 1257
BisI GCNGC 6 cut(s) 393, 528, 531, 982, 985, 1427
BlpI GCTNAGC 1 cut(s) 548
BlsI GCNGC 6 cut(s) 394, 529, 532, 983, 986, 1428
BmcAI AGTACT 1 cut(s) 499
Bme1390I CCNGG 5 cut(s) 168, 261, 535, 662, 1475
Bme18I GGWCC 2 cut(s) 538, 1471
BmgT120I GGNCC 3 cut(s) 538, 663, 1471
BmiI GGNNCC 3 cut(s) 539, 1118, 1254
BmrFI CCNGG 5 cut(s) 168, 261, 535, 662, 1475
BmrI ACTGGG 2 cut(s) 140, 385
BmsI GCATC 3 cut(s) 699, 1354, 1385
BmtI GCTAGC 1 cut(s) 318
BmuI ACTGGG 2 cut(s) 140, 385
Bpu1102I GCTNAGC 1 cut(s) 548
Bpu14I TTCGAA 1 cut(s) 1171
BpuMI CCSGG 1 cut(s) 662
BsaAI YACGTR 1 cut(s) 826
BsaJI CCNNGG 2 cut(s) 534, 1269
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 2 cut(s) 957, 1405
Bse1I ACTGG 6 cut(s) 146, 278, 355, 380, 973, 1097
BseBI CCWGG 4 cut(s) 168, 261, 535, 1475
BseDI CCNNGG 2 cut(s) 534, 1269
BseGI GGATG 5 cut(s) 228, 865, 1318, 1324, 1509
BseLI CCNNNNNNNGG 2 cut(s) 957, 1405
BseMII CTCAG 2 cut(s) 696, 1097
BseNI ACTGG 6 cut(s) 146, 278, 355, 380, 973, 1097
BseXI GCAGC 6 cut(s) 404, 517, 539, 968, 971, 1413
BseYI CCCAGC 1 cut(s) 323
BshFI GGCC 5 cut(s) 93, 264, 665, 1163, 1202
BshNI GGYRCC 1 cut(s) 1252
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 2 cut(s) 661, 1111
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 2 cut(s) 957, 1405
BsmAI GTCTC 1 cut(s) 1254
BsmFI GGGAC 1 cut(s) 551
BsnI GGCC 5 cut(s) 93, 264, 665, 1163, 1202
Bsp119I TTCGAA 1 cut(s) 1171
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 4 cut(s) 247, 802, 1302, 1326
Bsp1720I GCTNAGC 1 cut(s) 548
BspACI CCGC 3 cut(s) 480, 786, 1429
BspANI GGCC 5 cut(s) 93, 264, 665, 1163, 1202
BspCNI CTCAG 2 cut(s) 697, 1098
BspLI GGNNCC 3 cut(s) 539, 1118, 1254
BspOI GCTAGC 1 cut(s) 318
BspPI GGATC 2 cut(s) 255, 797
BspT104I TTCGAA 1 cut(s) 1171
BspT107I GGYRCC 1 cut(s) 1252
BsrI ACTGG 6 cut(s) 146, 278, 355, 380, 973, 1097
BssECI CCNNGG 2 cut(s) 534, 1269
BssMI GATC 4 cut(s) 247, 802, 1302, 1326
BssT1I CCWWGG 1 cut(s) 1269
Bst2UI CCWGG 4 cut(s) 168, 261, 535, 1475
Bst4CI ACNGT 2 cut(s) 1020, 1057
Bst6I CTCTTC 1 cut(s) 310
BstAPI GCANNNNNTGC 1 cut(s) 794
BstBAI YACGTR 1 cut(s) 826
BstBI TTCGAA 1 cut(s) 1171
BstC8I GCNNGC 3 cut(s) 316, 883, 1355
BstDEI CTNAG 6 cut(s) 152, 548, 705, 713, 1106, 1145
BstF5I GGATG 5 cut(s) 228, 865, 1318, 1324, 1509
BstHHI GCGC 3 cut(s) 866, 929, 1436
BstKTI GATC 4 cut(s) 250, 805, 1305, 1329
BstMAI GTCTC 1 cut(s) 1254
BstMBI GATC 4 cut(s) 247, 802, 1302, 1326
BstMWI GCNNNNNNNGC 7 cut(s) 320, 477, 794, 878, 924, 1373, 1442
BstNI CCWGG 4 cut(s) 168, 261, 535, 1475
BstNSI RCATGY 2 cut(s) 439, 885
BstSCI CCNGG 5 cut(s) 166, 259, 533, 660, 1473
BstV1I GCAGC 6 cut(s) 404, 517, 539, 968, 971, 1413
BstXI CCANNNNNNTGG 2 cut(s) 467, 638
BsuRI GGCC 5 cut(s) 93, 264, 665, 1163, 1202
BtgZI GCGATG 1 cut(s) 97
BtsCI GGATG 5 cut(s) 228, 865, 1318, 1324, 1509
BtsI GCAGTG 2 cut(s) 318, 792
BtsIMutI CAGTG 7 cut(s) 271, 318, 348, 792, 966, 1066, 1103
Cac8I GCNNGC 3 cut(s) 316, 883, 1355
CaiI CAGNNNCTG 1 cut(s) 197
CfoI GCGC 3 cut(s) 866, 929, 1436
Cfr13I GGNCC 3 cut(s) 538, 663, 1471
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 2 cut(s) 498, 1016
CspCI CAANNNNNGTGG 2 cut(s) 781, 816
CviQI GTAC 2 cut(s) 498, 1016
DdeI CTNAG 6 cut(s) 152, 548, 705, 713, 1106, 1145
DpnI GATC 4 cut(s) 249, 804, 1304, 1328
DpnII GATC 4 cut(s) 247, 802, 1302, 1326
DrdI GACNNNNNNGTC 1 cut(s) 679
DseDI GACNNNNNNGTC 1 cut(s) 679
EaeI YGGCCR 3 cut(s) 91, 1161, 1200
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 1269
Eco24I GRGCYC 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 538, 1471
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 3 cut(s) 93, 425, 602
Eco72I CACGTG 1 cut(s) 826
EcoICRI GAGCTC 1 cut(s) 403
EcoRII CCWGG 4 cut(s) 166, 259, 533, 1473
EcoT14I CCWWGG 1 cut(s) 1269
EcoT22I ATGCAT 2 cut(s) 887, 1524
EcoT38I GRGCYC 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 1269
FaqI GGGAC 1 cut(s) 551
FauNDI CATATG 2 cut(s) 205, 868
FbaI TGATCA 1 cut(s) 1302
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 6 cut(s) 393, 528, 531, 982, 985, 1427
FokI GGATG 5 cut(s) 215, 872, 1325, 1331, 1496
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 6 cut(s) 393, 528, 531, 982, 985, 1427
FspBI CTAG 5 cut(s) 65, 315, 737, 749, 1257
GlaI GCGC 3 cut(s) 865, 928, 1435
GluI GCNGC 6 cut(s) 393, 528, 531, 982, 985, 1427
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 5 cut(s) 93, 264, 665, 1163, 1202
HapII CCGG 2 cut(s) 661, 1111
HhaI GCGC 3 cut(s) 866, 929, 1436
Hin6I GCGC 3 cut(s) 864, 927, 1434
HinP1I GCGC 3 cut(s) 864, 927, 1434
HincII GTYRAC 2 cut(s) 1029, 1348
HindII GTYRAC 2 cut(s) 1029, 1348
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 6 cut(s) 26, 194, 642, 1000, 1033, 1064
HpaII CCGG 2 cut(s) 661, 1111
HphI GGTGA 7 cut(s) 46, 337, 347, 378, 693, 1281, 1334
Hpy166II GTNNAC 4 cut(s) 106, 1029, 1081, 1348
Hpy188I TCNGA 6 cut(s) 598, 621, 733, 1005, 1121, 1452
Hpy188III TCNNGA 4 cut(s) 245, 670, 893, 1037
Hpy8I GTNNAC 4 cut(s) 106, 1029, 1081, 1348
HpyAV CCTTC 5 cut(s) 737, 805, 1178, 1208, 1477
HpyCH4III ACNGT 2 cut(s) 1020, 1057
HpyCH4IV ACGT 1 cut(s) 825
HpyF10VI GCNNNNNNNGC 7 cut(s) 320, 477, 794, 878, 924, 1373, 1442
HpyF3I CTNAG 6 cut(s) 152, 548, 705, 713, 1106, 1145
HpySE526I ACGT 1 cut(s) 825
HspAI GCGC 3 cut(s) 864, 927, 1434
Ksp22I TGATCA 1 cut(s) 1302
Kzo9I GATC 4 cut(s) 247, 802, 1302, 1326
Lsp1109I GCAGC 6 cut(s) 404, 517, 539, 968, 971, 1413
LweI GCATC 3 cut(s) 699, 1354, 1385
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 5 cut(s) 65, 315, 737, 749, 1257
MaeII ACGT 1 cut(s) 825
MaeIII GTNAC 2 cut(s) 821, 1061
MalI GATC 4 cut(s) 249, 804, 1304, 1328
MboI GATC 4 cut(s) 247, 802, 1302, 1326
MboII GAAGA 4 cut(s) 86, 297, 752, 1469
MhlI GDGCHC 1 cut(s) 405
MlsI TGGCCA 2 cut(s) 1163, 1202
MluCI AATT 7 cut(s) 77, 286, 555, 568, 633, 689, 1284
MluNI TGGCCA 2 cut(s) 1163, 1202
MlyI GAGTC 1 cut(s) 1058
MmeI TCCRAC 1 cut(s) 1390
Mox20I TGGCCA 2 cut(s) 1163, 1202
Mph1103I ATGCAT 2 cut(s) 887, 1524
MscI TGGCCA 2 cut(s) 1163, 1202
MseI TTAA 4 cut(s) 234, 357, 945, 996
MslI CAYNNNNRTG 3 cut(s) 416, 858, 971
Msp20I TGGCCA 2 cut(s) 1163, 1202
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 2 cut(s) 661, 1111
MspR9I CCNGG 5 cut(s) 168, 261, 535, 662, 1475
MvaI CCWGG 4 cut(s) 168, 261, 535, 1475
MwoI GCNNNNNNNGC 7 cut(s) 320, 477, 794, 878, 924, 1373, 1442
NciI CCSGG 1 cut(s) 662
NdeI CATATG 2 cut(s) 205, 868
NdeII GATC 4 cut(s) 247, 802, 1302, 1326
NheI GCTAGC 1 cut(s) 314
NlaIV GGNNCC 3 cut(s) 539, 1118, 1254
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 821, 1061
NsiI ATGCAT 2 cut(s) 887, 1524
NspI RCATGY 2 cut(s) 439, 885
NspV TTCGAA 1 cut(s) 1171
PaeI GCATGC 1 cut(s) 885
PfeI GAWTC 5 cut(s) 26, 194, 642, 1000, 1033
PflMI CCANNNNNTGG 1 cut(s) 1405
PkrI GCNGC 6 cut(s) 394, 529, 532, 983, 986, 1428
PleI GAGTC 1 cut(s) 1058
PmaCI CACGTG 1 cut(s) 826
PmlI CACGTG 1 cut(s) 826
PpsI GAGTC 1 cut(s) 1058
Ppu21I YACGTR 1 cut(s) 826
Psp124BI GAGCTC 1 cut(s) 405
Psp6I CCWGG 4 cut(s) 166, 259, 533, 1473
PspCI CACGTG 1 cut(s) 826
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 4 cut(s) 166, 259, 533, 1473
PspN4I GGNNCC 3 cut(s) 539, 1118, 1254
PspPI GGNCC 3 cut(s) 538, 663, 1471
PstNI CAGNNNCTG 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 2 cut(s) 499, 1017
RsaNI GTAC 2 cut(s) 498, 1016
RseI CAYNNNNRTG 3 cut(s) 416, 858, 971
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 4 cut(s) 234, 357, 945, 996
SatI GCNGC 6 cut(s) 393, 528, 531, 982, 985, 1427
Sau3AI GATC 4 cut(s) 247, 802, 1302, 1326
Sau96I GGNCC 3 cut(s) 538, 663, 1471
ScaI AGTACT 1 cut(s) 499
SchI GAGTC 1 cut(s) 1058
ScrFI CCNGG 5 cut(s) 168, 261, 535, 662, 1475
SduI GDGCHC 1 cut(s) 405
SexAI ACCWGGT 1 cut(s) 166
SfaNI GCATC 3 cut(s) 699, 1354, 1385
SfuI TTCGAA 1 cut(s) 1171
SinI GGWCC 2 cut(s) 538, 1471
SmiMI CAYNNNNRTG 3 cut(s) 416, 858, 971
SphI GCATGC 1 cut(s) 885
Sse9I AATT 7 cut(s) 77, 286, 555, 568, 633, 689, 1284
SsiI CCGC 3 cut(s) 480, 786, 1429
SspMI CTAG 5 cut(s) 65, 315, 737, 749, 1257
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 5 cut(s) 166, 259, 533, 660, 1473
StyI CCWWGG 1 cut(s) 1269
TaaI ACNGT 2 cut(s) 1020, 1057
TaiI ACGT 1 cut(s) 828
TaqI TCGA 3 cut(s) 405, 901, 1171
TasI AATT 7 cut(s) 77, 286, 555, 568, 633, 689, 1284
TatI WGTACW 1 cut(s) 497
TfiI GAWTC 5 cut(s) 26, 194, 642, 1000, 1033
Tru1I TTAA 4 cut(s) 234, 357, 945, 996
Tru9I TTAA 4 cut(s) 234, 357, 945, 996
TscAI CASTG 7 cut(s) 278, 325, 355, 799, 973, 1066, 1110
TseFI GTSAC 2 cut(s) 821, 1061
TseI GCWGC 6 cut(s) 392, 527, 530, 981, 984, 1426
Tsp45I GTSAC 2 cut(s) 821, 1061
TspDTI ATGAA 5 cut(s) 48, 100, 372, 842, 898
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 7 cut(s) 278, 325, 355, 799, 973, 1066, 1110
Van91I CCANNNNNTGG 1 cut(s) 1405
VpaK11BI GGWCC 2 cut(s) 538, 1471
XapI RAATTY 5 cut(s) 286, 568, 633, 689, 1284
XceI RCATGY 2 cut(s) 439, 885
XcmI CCANNNNNNNNNTGG 1 cut(s) 1406
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 5 cut(s) 65, 315, 737, 749, 1257
ZrmI AGTACT 1 cut(s) 499
Zsp2I ATGCAT 2 cut(s) 887, 1524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.