Rorug05G0023300

Tyrosine dopa decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001466
Physical Location & Seq
Forward (+)
1467098 .. 1467991
894 bp
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UTR
Exon/CDS
Intron
Rorug05G0023300.1

Sequence Viewer

Length: 255 bp
ATGGCGACGGAAGCACCGGGGTGGGCGGATCAATGGGGCGCCGGAGGCATCGGTGCATTGGAAGATGAAGACAAGAACAAAAGCCTGGAAGACAACAACAAGAAGAAGGGAGAGACCAAGTCTGGACTAAACAAAGCTAAGGTTGCAGCAATGGCTGGCGCTGAAAAGATCAAAAGTGGCACAACCAATGGCATCAAATGGATCAAAAATCAGTGCCAGAAGAAGAAATCTACCAAGACCCCAACTGAAGTTTAA

Protein Analysis

84

Amino Acids

8.95

Weight (kDa)

9.41

Isoelectric Point (pI)

13.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AciI CCGC 1 cut(s) 26
AclWI GGATC 2 cut(s) 36, 209
AcyI GRCGYC 1 cut(s) 39
AjnI CCWGG 1 cut(s) 84
AleI CACNNNNGTG 1 cut(s) 19
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 2 cut(s) 36, 209
ApeKI GCWGC 1 cut(s) 146
AspLEI GCGC 2 cut(s) 41, 161
AsuC2I CCSGG 1 cut(s) 18
BanI GGYRCC 1 cut(s) 38
BbsI GAAGAC 2 cut(s) 75, 96
BbvI GCAGC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 86
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 107
BfoI RGCGCY 2 cut(s) 42, 162
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 2 cut(s) 18, 86
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 2 cut(s) 18, 86
BmsI GCATC 2 cut(s) 57, 201
BpiI GAAGAC 2 cut(s) 75, 96
Bpu10I CCTNAGC 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 38
BsiSI CCGG 2 cut(s) 17, 42
BsmAI GTCTC 1 cut(s) 107
Bso31I GGTCTC 1 cut(s) 107
Bsp143I GATC 3 cut(s) 28, 168, 201
BspACI CCGC 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 2 cut(s) 36, 209
BspT107I GGYRCC 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 3 cut(s) 28, 168, 201
BssNI GRCGYC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 138
BstH2I RGCGCY 2 cut(s) 42, 162
BstHHI GCGC 2 cut(s) 41, 161
BstKTI GATC 3 cut(s) 31, 171, 204
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 3 cut(s) 28, 168, 201
BstMWI GCNNNNNNNGC 4 cut(s) 11, 45, 143, 152
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 16, 84
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 2 cut(s) 75, 96
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 2 cut(s) 41, 161
CviJI RGCY 3 cut(s) 84, 137, 155
CviKI_1 RGCY 3 cut(s) 84, 137, 155
DdeI CTNAG 1 cut(s) 138
DinI GGCGCC 1 cut(s) 40
DpnI GATC 3 cut(s) 30, 170, 203
DpnII GATC 3 cut(s) 28, 168, 201
EciI GGCGGA 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 84
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 147
GlaI GCGC 2 cut(s) 40, 160
GluI GCNGC 1 cut(s) 147
HaeII RGCGCY 2 cut(s) 42, 162
HapII CCGG 2 cut(s) 17, 42
HhaI GCGC 2 cut(s) 41, 161
Hin1I GRCGYC 1 cut(s) 39
Hin6I GCGC 2 cut(s) 39, 159
HinP1I GCGC 2 cut(s) 39, 159
HpaII CCGG 2 cut(s) 17, 42
Hpy188III TCNNGA 1 cut(s) 123
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 56, 146
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 45, 143, 152
HpyF3I CTNAG 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 39
HspAI GCGC 2 cut(s) 39, 159
KasI GGCGCC 1 cut(s) 38
Kzo9I GATC 3 cut(s) 28, 168, 201
LpnPI CCDG 7 cut(s) 30, 55, 71, 98, 108, 141, 230
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 2 cut(s) 57, 201
MalI GATC 3 cut(s) 30, 170, 203
MboI GATC 3 cut(s) 28, 168, 201
MboII GAAGA 6 cut(s) 74, 80, 101, 115, 232, 235
Mly113I GGCGCC 1 cut(s) 39
MnlI CCTC 1 cut(s) 38
MseI TTAA 1 cut(s) 253
MslI CAYNNNNRTG 1 cut(s) 19
MspI CCGG 2 cut(s) 17, 42
MspR9I CCNGG 2 cut(s) 18, 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 4 cut(s) 11, 45, 143, 152
NarI GGCGCC 1 cut(s) 39
NciI CCSGG 1 cut(s) 18
NdeII GATC 3 cut(s) 28, 168, 201
NlaIV GGNNCC 1 cut(s) 40
OliI CACNNNNGTG 1 cut(s) 19
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 148
PluTI GGCGCC 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 40
PsyI GACNNNGTC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 19
SaqAI TTAA 1 cut(s) 253
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 3 cut(s) 28, 168, 201
ScrFI CCNGG 2 cut(s) 18, 86
SetI ASST 2 cut(s) 139, 144
SfaNI GCATC 2 cut(s) 57, 201
SfoI GGCGCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 19
SsiI CCGC 1 cut(s) 26
SspDI GGCGCC 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 16, 84
Tru1I TTAA 1 cut(s) 253
Tru9I TTAA 1 cut(s) 253
TscAI CASTG 1 cut(s) 218
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 81
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 218
Tth111I GACNNNGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.