Rh5BG115700

Tyrosine dopa decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001466
Physical Location & Seq
Reverse (-)
10883704 .. 10884801
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG115700.1

Sequence Viewer

Length: 1098 bp
ATGGGTAGCCTCGAGATCCACCATGGTCCAGAAGAAAACAACTCTGATTCCCCCGTGGCCAACCCTCTGGATCCTGGAGAATTCAGGAGACAAGGCCACATAGTGATAGATTTTATTGCAGACTATTACAAGAACATAGAGAAGTACCCGGTTCTAAGCCAAGTTCAACCAGGTTATCTCAAAAAGCGCCTCCCGGAGTCTGCGCCACACAACCCTGAGCTGATTGAAACCATCCTCCAAGATGTGCGAGATCATATTGTTCCTGGTATAACACATTGTCAAAGCCCTAGCTACTTTGCCTACTTTCCTTCAAGTGGTAGCATCGCAGGGTTTCTCGGCGAAATGCTTAGCACTGGATTCAATGTGGTTGGATTCAACTGGATGTCATCGCCTGCTGCAACTGAGCTAGAAAGCATAGTCATGGATTGGCTTGGAGACATGCTTCAACTTCCCAAGTCTTTCCTTTTCTCTGGCAACGGTGGTGGTGTGTTACAAGGGACTACTTGTGAGGCCATTGTTTGCACCATGGCTGCTGCTAAAGACCAAATGCTAAGCCGAATTGGTAAAGACAACATTGGGAGGCTAGTTGTATATGGGTCAGATCAAACACATAGTGCACTTAAAAAAGCCTCCCAAATTGTTGGAATCCATCCAAACAATTTCAGGGCCATCAACACTACACAATCCACAAATTTTGCACTATCACCTGAGTTGCTGAGATCCACAATTTGTTCTGACATAGAAAAAGGGTTAGTTCCTTTGTTTCTATGTGCCACGATGGGAACAACTGCAACCACTTCTGTTGATCCATTGGGGGGACTGTGTGATGTAGCGAAAGATTATGGCATGTGGGTTCATGTCGATGCAGTATACGCAGGAAGTGTCTGCATTTGTCCAGAGTTTCGGCATTTCATTGAACGCGTTGAGGGAGCAAATTCATTCAGTTTCAATGCACATAAATGGTTCTTCACAACCCTAGATTGTTGCTGCCTTTGGGTTAAGAATCCAAGTGCATTGGTACTTTCACTGTCAACCAATCCAGAGTATTTGAGGAACACAGCCAGTGACTCAAAACAAGTTGTGGACTACAAAGACTAG

Protein Analysis

365

Amino Acids

39.99

Weight (kDa)

5.35

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 57 - 356 1.2e-86 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 870
AccII CGCG 1 cut(s) 921
AclWI GGATC 5 cut(s) 10, 65, 78, 714, 800
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 3 cut(s) 80, 691, 934
AdeI CACNNNGTG 2 cut(s) 103, 614
AfaI GTAC 2 cut(s) 146, 1020
AfiI CCNNNNNNNGG 2 cut(s) 314, 815
AflIII ACRYGT 1 cut(s) 919
AgsI TTSAA 8 cut(s) 167, 227, 312, 361, 376, 446, 917, 949
AjnI CCWGG 3 cut(s) 73, 169, 262
AluBI AGCT 3 cut(s) 220, 291, 406
AluI AGCT 3 cut(s) 220, 291, 406
Alw21I GWGCWC 1 cut(s) 619
Alw26I GTCTC 2 cut(s) 82, 429
Alw44I GTGCAC 1 cut(s) 615
AlwI GGATC 5 cut(s) 10, 65, 78, 714, 800
Ama87I CYCGRG 1 cut(s) 11
AoxI GGCC 4 cut(s) 57, 94, 510, 666
ApaLI GTGCAC 1 cut(s) 615
ApeKI GCWGC 4 cut(s) 395, 530, 533, 987
ApoI RAATTY 3 cut(s) 80, 691, 934
AspLEI GCGC 2 cut(s) 189, 205
AspS9I GGNCC 2 cut(s) 26, 666
AsuC2I CCSGG 2 cut(s) 149, 194
AsuHPI GGTGA 1 cut(s) 696
AvaI CYCGRG 1 cut(s) 11
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 619
BalI TGGCCA 1 cut(s) 59
BamHI GGATCC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 619
BbvI GCAGC 4 cut(s) 382, 517, 520, 974
BccI CCATC 4 cut(s) 239, 657, 677, 772
BciT130I CCWGG 3 cut(s) 75, 171, 264
BcnI CCSGG 2 cut(s) 149, 194
BcoDI GTCTC 2 cut(s) 82, 429
BfaI CTAG 5 cut(s) 288, 407, 584, 977, 1096
BfoI RGCGCY 1 cut(s) 190
BisI GCNGC 4 cut(s) 396, 531, 534, 988
BlpI GCTNAGC 2 cut(s) 347, 551
BlsI GCNGC 4 cut(s) 397, 532, 535, 989
Bme1390I CCNGG 5 cut(s) 75, 149, 171, 194, 264
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 26, 666
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 5 cut(s) 75, 149, 171, 194, 264
BmsI GCATC 2 cut(s) 330, 853
BpmI CTGGAG 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 216
Bpu1102I GCTNAGC 2 cut(s) 347, 551
BpuMI CCSGG 2 cut(s) 149, 194
BsaJI CCNNGG 3 cut(s) 22, 54, 525
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 815
Bse1I ACTGG 3 cut(s) 358, 383, 1062
BseBI CCWGG 3 cut(s) 75, 171, 264
BseDI CCNNGG 3 cut(s) 22, 54, 525
BseGI GGATG 3 cut(s) 231, 387, 649
BseLI CCNNNNNNNGG 2 cut(s) 314, 815
BseMII CTCAG 4 cut(s) 207, 393, 699, 707
BseNI ACTGG 3 cut(s) 358, 383, 1062
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 4 cut(s) 382, 517, 520, 974
Bsh1236I CGCG 1 cut(s) 921
BshFI GGCC 4 cut(s) 59, 96, 512, 668
BsiHKAI GWGCWC 1 cut(s) 619
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 2 cut(s) 149, 194
BslFI GGGAC 2 cut(s) 511, 831
BslI CCNNNNNNNGG 2 cut(s) 314, 815
BsmAI GTCTC 2 cut(s) 82, 429
BsmFI GGGAC 2 cut(s) 511, 831
BsnI GGCC 4 cut(s) 59, 96, 512, 668
BsoBI CYCGRG 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 619
Bsp143I GATC 6 cut(s) 15, 70, 250, 601, 719, 805
Bsp1720I GCTNAGC 2 cut(s) 347, 551
Bsp19I CCATGG 2 cut(s) 22, 525
BspANI GGCC 4 cut(s) 59, 96, 512, 668
BspCNI CTCAG 4 cut(s) 208, 394, 700, 708
BspFNI CGCG 1 cut(s) 921
BspLI GGNNCC 1 cut(s) 72
BspPI GGATC 5 cut(s) 10, 65, 78, 714, 800
BsrI ACTGG 3 cut(s) 358, 383, 1062
BssECI CCNNGG 3 cut(s) 22, 54, 525
BssMI GATC 6 cut(s) 15, 70, 250, 601, 719, 805
BssNAI GTATAC 1 cut(s) 871
BssT1I CCWWGG 2 cut(s) 22, 525
Bst1107I GTATAC 1 cut(s) 871
Bst2UI CCWGG 3 cut(s) 75, 171, 264
Bst4CI ACNGT 3 cut(s) 479, 822, 1029
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 7 cut(s) 155, 216, 347, 402, 551, 708, 716
BstDSI CCRYGG 3 cut(s) 22, 54, 525
BstF5I GGATG 3 cut(s) 231, 387, 649
BstFNI CGCG 1 cut(s) 921
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 2 cut(s) 189, 205
BstKTI GATC 6 cut(s) 18, 73, 253, 604, 722, 808
BstMAI GTCTC 2 cut(s) 82, 429
BstMBI GATC 6 cut(s) 15, 70, 250, 601, 719, 805
BstMWI GCNNNNNNNGC 1 cut(s) 872
BstNI CCWGG 3 cut(s) 75, 171, 264
BstNSI RCATGY 2 cut(s) 442, 850
BstSCI CCNGG 5 cut(s) 73, 147, 169, 192, 262
BstSLI GKGCMC 1 cut(s) 619
BstUI CGCG 1 cut(s) 921
BstV1I GCAGC 4 cut(s) 382, 517, 520, 974
BstX2I RGATCY 3 cut(s) 15, 70, 719
BstXI CCANNNNNNTGG 2 cut(s) 67, 641
BstYI RGATCY 3 cut(s) 15, 70, 719
BstZ17I GTATAC 1 cut(s) 871
BsuRI GGCC 4 cut(s) 59, 96, 512, 668
BtgI CCRYGG 3 cut(s) 22, 54, 525
BtgZI GCGATG 2 cut(s) 307, 372
BtsCI GGATG 3 cut(s) 231, 387, 649
BtsIMutI CAGTG 3 cut(s) 351, 1025, 1069
Cac8I GCNNGC 1 cut(s) 393
CfoI GCGC 2 cut(s) 189, 205
Cfr13I GGNCC 2 cut(s) 26, 666
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 2 cut(s) 145, 1019
CspCI CAANNNNNGTGG 6 cut(s) 463, 498, 676, 711, 784, 819
CviAII CATG 6 cut(s) 23, 421, 439, 526, 847, 857
CviQI GTAC 2 cut(s) 145, 1019
DdeI CTNAG 7 cut(s) 155, 216, 347, 402, 551, 708, 716
DpnI GATC 6 cut(s) 17, 72, 252, 603, 721, 807
DpnII GATC 6 cut(s) 15, 70, 250, 601, 719, 805
DraIII CACNNNGTG 2 cut(s) 103, 614
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 2 cut(s) 22, 525
Eco47I GGWCC 1 cut(s) 26
Eco88I CYCGRG 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 3 cut(s) 73, 169, 262
EcoT14I CCWWGG 2 cut(s) 22, 525
ErhI CCWWGG 2 cut(s) 22, 525
FaeI CATG 6 cut(s) 26, 424, 442, 529, 850, 860
FaqI GGGAC 2 cut(s) 511, 831
FatI CATG 6 cut(s) 22, 420, 438, 525, 846, 856
FblI GTMKAC 1 cut(s) 870
Fnu4HI GCNGC 4 cut(s) 396, 531, 534, 988
FokI GGATG 3 cut(s) 218, 394, 636
Fsp4HI GCNGC 4 cut(s) 396, 531, 534, 988
FspBI CTAG 5 cut(s) 288, 407, 584, 977, 1096
GlaI GCGC 2 cut(s) 188, 204
GluI GCNGC 4 cut(s) 396, 531, 534, 988
GsuI CTGGAG 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 4 cut(s) 59, 96, 512, 668
HapII CCGG 2 cut(s) 149, 194
HhaI GCGC 2 cut(s) 189, 205
Hin1II CATG 6 cut(s) 26, 424, 442, 529, 850, 860
Hin6I GCGC 2 cut(s) 187, 203
HinP1I GCGC 2 cut(s) 187, 203
HincII GTYRAC 1 cut(s) 1032
HindII GTYRAC 1 cut(s) 1032
HinfI GANTC 7 cut(s) 47, 197, 357, 372, 645, 1003, 1067
HpaII CCGG 2 cut(s) 149, 194
HphI GGTGA 1 cut(s) 696
Hpy166II GTNNAC 4 cut(s) 617, 871, 1032, 1084
Hpy188I TCNGA 3 cut(s) 46, 601, 736
Hpy188III TCNNGA 6 cut(s) 13, 29, 68, 85, 896, 1040
Hpy8I GTNNAC 4 cut(s) 617, 871, 1032, 1084
HpyAV CCTTC 1 cut(s) 318
HpyCH4III ACNGT 3 cut(s) 479, 822, 1029
HpyF10VI GCNNNNNNNGC 1 cut(s) 872
HpyF3I CTNAG 7 cut(s) 155, 216, 347, 402, 551, 708, 716
Hsp92II CATG 6 cut(s) 26, 424, 442, 529, 850, 860
HspAI GCGC 2 cut(s) 187, 203
Kzo9I GATC 6 cut(s) 15, 70, 250, 601, 719, 805
LmnI GCTCC 1 cut(s) 929
Lsp1109I GCAGC 4 cut(s) 382, 517, 520, 974
LweI GCATC 2 cut(s) 330, 853
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 5 cut(s) 288, 407, 584, 977, 1096
MaeIII GTNAC 2 cut(s) 489, 1064
MalI GATC 6 cut(s) 17, 72, 252, 603, 721, 807
MboI GATC 6 cut(s) 15, 70, 250, 601, 719, 805
MboII GAAGA 2 cut(s) 44, 958
MflI RGATCY 3 cut(s) 15, 70, 719
MhlI GDGCHC 1 cut(s) 619
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 7 cut(s) 80, 558, 636, 658, 691, 726, 934
MluI ACGCGT 1 cut(s) 919
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 2 cut(s) 206, 1061
MmeI TCCRAC 2 cut(s) 349, 622
MnlI CCTC 9 cut(s) 20, 75, 200, 245, 502, 573, 640, 919, 1044
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 2 cut(s) 621, 999
MslI CAYNNNNRTG 3 cut(s) 419, 861, 958
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 2 cut(s) 149, 194
MspR9I CCNGG 5 cut(s) 75, 149, 171, 194, 264
MvaI CCWGG 3 cut(s) 75, 171, 264
MvnI CGCG 1 cut(s) 921
MwoI GCNNNNNNNGC 1 cut(s) 872
NciI CCSGG 2 cut(s) 149, 194
NcoI CCATGG 2 cut(s) 22, 525
NdeII GATC 6 cut(s) 15, 70, 250, 601, 719, 805
NlaIII CATG 6 cut(s) 26, 424, 442, 529, 850, 860
NlaIV GGNNCC 1 cut(s) 72
NmeAIII GCCGAG 1 cut(s) 315
NmuCI GTSAC 1 cut(s) 1064
NspI RCATGY 2 cut(s) 442, 850
PaeR7I CTCGAG 1 cut(s) 11
PfeI GAWTC 5 cut(s) 47, 357, 372, 645, 1003
PfoI TCCNGGA 2 cut(s) 73, 192
PkrI GCNGC 4 cut(s) 397, 532, 535, 989
PleI GAGTC 2 cut(s) 205, 1061
PpsI GAGTC 2 cut(s) 205, 1061
Psp6I CCWGG 3 cut(s) 73, 169, 262
PspGI CCWGG 3 cut(s) 73, 169, 262
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 2 cut(s) 26, 666
PsuI RGATCY 3 cut(s) 15, 70, 719
RsaI GTAC 2 cut(s) 146, 1020
RsaNI GTAC 2 cut(s) 145, 1019
RseI CAYNNNNRTG 3 cut(s) 419, 861, 958
SaqAI TTAA 2 cut(s) 621, 999
SatI GCNGC 4 cut(s) 396, 531, 534, 988
Sau3AI GATC 6 cut(s) 15, 70, 250, 601, 719, 805
Sau96I GGNCC 2 cut(s) 26, 666
SchI GAGTC 2 cut(s) 206, 1061
ScrFI CCNGG 5 cut(s) 75, 149, 171, 194, 264
SduI GDGCHC 1 cut(s) 619
SetI ASST 5 cut(s) 175, 222, 293, 408, 709
SexAI ACCWGGT 1 cut(s) 169
SfaNI GCATC 2 cut(s) 330, 853
Sfr274I CTCGAG 1 cut(s) 11
SinI GGWCC 1 cut(s) 26
SlaI CTCGAG 1 cut(s) 11
SmiMI CAYNNNNRTG 3 cut(s) 419, 861, 958
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 7 cut(s) 80, 558, 636, 658, 691, 726, 934
SspMI CTAG 5 cut(s) 288, 407, 584, 977, 1096
StyD4I CCNGG 5 cut(s) 73, 147, 169, 192, 262
StyI CCWWGG 2 cut(s) 22, 525
TaaI ACNGT 3 cut(s) 479, 822, 1029
TaqI TCGA 2 cut(s) 12, 861
TasI AATT 7 cut(s) 80, 558, 636, 658, 691, 726, 934
TfiI GAWTC 5 cut(s) 47, 357, 372, 645, 1003
Tru1I TTAA 2 cut(s) 621, 999
Tru9I TTAA 2 cut(s) 621, 999
TscAI CASTG 3 cut(s) 358, 1032, 1069
TseFI GTSAC 1 cut(s) 1064
TseI GCWGC 4 cut(s) 395, 530, 533, 987
Tsp45I GTSAC 1 cut(s) 1064
TspDTI ATGAA 3 cut(s) 845, 901, 927
TspRI CASTG 3 cut(s) 358, 1032, 1069
VneI GTGCAC 1 cut(s) 615
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 3 cut(s) 80, 691, 934
XceI RCATGY 2 cut(s) 442, 850
XhoI CTCGAG 1 cut(s) 11
XmiI GTMKAC 1 cut(s) 870
XspI CTAG 5 cut(s) 288, 407, 584, 977, 1096
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.