Rh5BG116200

Tyrosine dopa decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001466
Physical Location & Seq
Reverse (-)
10947153 .. 10948283
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG116200.1

Sequence Viewer

Length: 1131 bp
ATGGATTGGCTCGCAGACATGCTTCAGCTTCCCAAGTCGTTTCATTTCTCTGGTAACGGCGGTGGTGTGTTACATGGGAGTACTTGCGAAGCCATTGTTTGCACAATGGCAGCTGCCAGGGACCAAATGCTAAGCCGAATTGGTAGCGAGAATTTGGGAAAGCTTGTTGTGTATGGTTCAGACCAAACACATAGCACACTTCAAAAAGCTACCCAAATTGTTGGAATCAACCCGGAGAACTTCAGGGCCATCAAGACTACAAAGTCAACTGGATTTGCACTATCACCTGAAATGCTAAGACTGACAATAAGTTCAGACAGAGCAAAAGGGCTAGTGCCACTTTTTCTATGTGCCACAATGGGCACAACCGCAACCACTGCTATAGATCCATTGGGGGCAGTGTGCAATGTAGCCGAAGATTATGGCATGTGGGTTCATGTGGATGCTGCATATGCAGGAAGTGCTTGCATCTGTCCAGAGTTTCGTCATTTCATTGATGGCGTTGAGGGTGCAAACTCATTTAGTTTCAACCCGCATAAATGGTTATTTACTGCAATGGACTGTTGCTGCCTTTGGGTTAAGAGCCCAAGTGCATTAATAAATTCACTGTCGACGAATCCAGAGTATTTGAGGAACAAAGCCAGTGATACAAAGCAAGTTGTGGACTACAAAAACTGGCAAATAGCACTAAGCCGGAGGTTCCGGGCATTGAAGCTATGGCTTGTGCTAAGAAGCTACGGCGTGGCTAACCTAAGAAAATTTATTCGAAGCCATGTCAAAATGGCCAAGATTTTTGAAGGGCTTGTGAGAATGGACAATAGGTTTGAAATTGTGGTTCCTAGAAACTTCTCCTTGGTCTGTTTCAGGATTTCACTATCCGCAATAGTTAGTGATGATCATTATGATGGTGAGGAGTACAATATGGTAAACGAGATCAATCGCAAGTTGCTGGAGGCCATCAATGCATCAGGCTCTGTGTTCATGACTCATGCTGTGGTTGGAGGTGTCTACGTGCTACGGTGCGCAGTTGGTGCAACTCTAACTGAGGAAAAGCACATTCGAGAGGCCTGGAAGGCGGTGCAAGGCCAGGCACATACAATTCTCTCAGCATGTATTGTTGACTATGCATAA

Protein Analysis

376

Amino Acids

41.54

Weight (kDa)

8.4

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 1 - 290 3.6e-85 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 262
Acc16I TGCGCA 1 cut(s) 1024
AccI GTMKAC 2 cut(s) 611, 1008
AciI CCGC 5 cut(s) 60, 369, 533, 879, 1076
AclWI GGATC 1 cut(s) 380
AcoI YGGCCR 1 cut(s) 783
AcsI RAATTY 3 cut(s) 151, 601, 758
AcuI CTGAAG 2 cut(s) 8, 226
AfaI GTAC 2 cut(s) 82, 917
AgsI TTSAA 5 cut(s) 203, 529, 712, 797, 827
AjnI CCWGG 3 cut(s) 116, 1067, 1086
AluBI AGCT 6 cut(s) 28, 113, 163, 209, 715, 735
AluI AGCT 6 cut(s) 28, 113, 163, 209, 715, 735
AlwI GGATC 1 cut(s) 380
AlwNI CAGNNNCTG 1 cut(s) 974
AoxI GGCC 5 cut(s) 246, 783, 954, 1065, 1084
ApeKI GCWGC 4 cut(s) 110, 113, 446, 567
ApoI RAATTY 3 cut(s) 151, 601, 758
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
AseI ATTAAT 1 cut(s) 596
AspLEI GCGC 1 cut(s) 1025
AspS9I GGNCC 2 cut(s) 121, 246
AsuC2I CCSGG 2 cut(s) 233, 704
AsuHPI GGTGA 2 cut(s) 276, 920
AsuII TTCGAA 1 cut(s) 766
AvaII GGWCC 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 365
BalI TGGCCA 1 cut(s) 785
BanII GRGCYC 1 cut(s) 587
BbvI GCAGC 4 cut(s) 100, 122, 433, 554
BccI CCATC 4 cut(s) 257, 491, 899, 965
BceAI ACGGC 2 cut(s) 73, 754
BciT130I CCWGG 3 cut(s) 118, 1069, 1088
BclI TGATCA 1 cut(s) 895
BcnI CCSGG 2 cut(s) 233, 704
BfaI CTAG 2 cut(s) 332, 840
BfmI CTRYAG 1 cut(s) 381
BglI GCCNNNNNGGC 1 cut(s) 1073
BisI GCNGC 4 cut(s) 111, 114, 447, 568
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 4 cut(s) 112, 115, 448, 569
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 5 cut(s) 118, 233, 704, 1069, 1088
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 121, 246
BmiI GGNNCC 3 cut(s) 122, 701, 837
BmrFI CCNGG 5 cut(s) 118, 233, 704, 1069, 1088
BmsI GCATC 3 cut(s) 433, 477, 974
BpmI CTGGAG 1 cut(s) 971
Bpu1102I GCTNAGC 1 cut(s) 131
Bpu14I TTCGAA 1 cut(s) 766
BpuMI CCSGG 2 cut(s) 233, 704
BsaAI YACGTR 1 cut(s) 1012
BsaJI CCNNGG 2 cut(s) 117, 852
Bse1I ACTGG 3 cut(s) 274, 642, 680
Bse3DI GCAATG 2 cut(s) 412, 561
BseBI CCWGG 3 cut(s) 118, 1069, 1088
BseDI CCNNGG 2 cut(s) 117, 852
BseGI GGATG 1 cut(s) 448
BseMI GCAATG 2 cut(s) 412, 561
BseMII CTCAG 2 cut(s) 1035, 1119
BseNI ACTGG 3 cut(s) 274, 642, 680
BseRI GAGGAG 1 cut(s) 926
BseSI GKGCMC 1 cut(s) 365
BseXI GCAGC 4 cut(s) 100, 122, 433, 554
BshFI GGCC 5 cut(s) 248, 785, 956, 1067, 1086
BsiSI CCGG 3 cut(s) 233, 694, 703
BslFI GGGAC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 5 cut(s) 248, 785, 956, 1067, 1086
Bsp119I TTCGAA 1 cut(s) 766
Bsp1286I GDGCHC 2 cut(s) 365, 587
Bsp143I GATC 3 cut(s) 385, 895, 933
Bsp1720I GCTNAGC 1 cut(s) 131
BspACI CCGC 5 cut(s) 60, 369, 533, 879, 1076
BspANI GGCC 5 cut(s) 248, 785, 956, 1067, 1086
BspCNI CTCAG 2 cut(s) 1036, 1118
BspHI TCATGA 1 cut(s) 981
BspLI GGNNCC 3 cut(s) 122, 701, 837
BspPI GGATC 1 cut(s) 380
BspT104I TTCGAA 1 cut(s) 766
BsrDI GCAATG 2 cut(s) 412, 561
BsrI ACTGG 3 cut(s) 274, 642, 680
BssECI CCNNGG 2 cut(s) 117, 852
BssMI GATC 3 cut(s) 385, 895, 933
BssT1I CCWWGG 1 cut(s) 852
Bst2UI CCWGG 3 cut(s) 118, 1069, 1088
Bst4CI ACNGT 3 cut(s) 563, 609, 1020
BstAPI GCANNNNNTGC 3 cut(s) 377, 461, 1031
BstBAI YACGTR 1 cut(s) 1012
BstBI TTCGAA 1 cut(s) 766
BstC8I GCNNGC 2 cut(s) 12, 466
BstDEI CTNAG 7 cut(s) 131, 296, 689, 728, 752, 1044, 1105
BstF5I GGATG 1 cut(s) 448
BstHHI GCGC 1 cut(s) 1025
BstKTI GATC 3 cut(s) 388, 898, 936
BstMBI GATC 3 cut(s) 385, 895, 933
BstMWI GCNNNNNNNGC 6 cut(s) 377, 452, 461, 962, 1031, 1073
BstNI CCWGG 3 cut(s) 118, 1069, 1088
BstNSI RCATGY 3 cut(s) 22, 430, 1113
BstSCI CCNGG 5 cut(s) 116, 231, 702, 1067, 1086
BstSFI CTRYAG 1 cut(s) 381
BstSLI GKGCMC 1 cut(s) 365
BstV1I GCAGC 4 cut(s) 100, 122, 433, 554
BstX2I RGATCY 1 cut(s) 385
BstXI CCANNNNNNTGG 1 cut(s) 221
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 5 cut(s) 248, 785, 956, 1067, 1086
BtsCI GGATG 1 cut(s) 448
BtsI GCAGTG 2 cut(s) 375, 405
BtsIMutI CAGTG 4 cut(s) 375, 405, 605, 649
Cac8I GCNNGC 2 cut(s) 12, 466
CaiI CAGNNNCTG 1 cut(s) 974
CciI TCATGA 1 cut(s) 981
CfoI GCGC 1 cut(s) 1025
Cfr13I GGNCC 2 cut(s) 121, 246
Csp6I GTAC 2 cut(s) 81, 916
CviAII CATG 8 cut(s) 19, 74, 427, 437, 773, 982, 989, 1110
CviQI GTAC 2 cut(s) 81, 916
DdeI CTNAG 7 cut(s) 131, 296, 689, 728, 752, 1044, 1105
DpnI GATC 3 cut(s) 387, 897, 935
DpnII GATC 3 cut(s) 385, 895, 933
DrdI GACNNNNNNGTC 1 cut(s) 262
DseDI GACNNNNNNGTC 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 783
Eco130I CCWWGG 1 cut(s) 852
Eco147I AGGCCT 1 cut(s) 1067
Eco24I GRGCYC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 2 cut(s) 8, 226
EcoRII CCWGG 3 cut(s) 116, 1067, 1086
EcoT14I CCWWGG 1 cut(s) 852
EcoT22I ATGCAT 2 cut(s) 967, 1129
EcoT38I GRGCYC 1 cut(s) 587
ErhI CCWWGG 1 cut(s) 852
FaeI CATG 8 cut(s) 22, 77, 430, 440, 776, 985, 992, 1113
FaqI GGGAC 1 cut(s) 134
FatI CATG 8 cut(s) 18, 73, 426, 436, 772, 981, 988, 1109
FauI CCCGC 1 cut(s) 540
FauNDI CATATG 1 cut(s) 451
FbaI TGATCA 1 cut(s) 895
FblI GTMKAC 2 cut(s) 611, 1008
Fnu4HI GCNGC 4 cut(s) 111, 114, 447, 568
FokI GGATG 1 cut(s) 455
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 4 cut(s) 111, 114, 447, 568
FspBI CTAG 2 cut(s) 332, 840
FspI TGCGCA 1 cut(s) 1024
GlaI GCGC 1 cut(s) 1024
GluI GCNGC 4 cut(s) 111, 114, 447, 568
GsuI CTGGAG 1 cut(s) 971
HaeIII GGCC 5 cut(s) 248, 785, 956, 1067, 1086
HapII CCGG 3 cut(s) 233, 694, 703
HhaI GCGC 1 cut(s) 1025
Hin1II CATG 8 cut(s) 22, 77, 430, 440, 776, 985, 992, 1113
Hin6I GCGC 1 cut(s) 1023
HinP1I GCGC 1 cut(s) 1023
HincII GTYRAC 3 cut(s) 267, 612, 1120
HindII GTYRAC 3 cut(s) 267, 612, 1120
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 3 cut(s) 225, 616, 985
HpaII CCGG 3 cut(s) 233, 694, 703
HphI GGTGA 2 cut(s) 276, 920
Hpy166II GTNNAC 6 cut(s) 267, 612, 664, 928, 1009, 1120
Hpy188I TCNGA 2 cut(s) 181, 316
Hpy188III TCNNGA 6 cut(s) 253, 476, 620, 865, 982, 1061
Hpy8I GTNNAC 6 cut(s) 267, 612, 664, 928, 1009, 1120
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 2 cut(s) 791, 1066
HpyCH4III ACNGT 3 cut(s) 563, 609, 1020
HpyCH4IV ACGT 1 cut(s) 1011
HpyF10VI GCNNNNNNNGC 6 cut(s) 377, 452, 461, 962, 1031, 1073
HpyF3I CTNAG 7 cut(s) 131, 296, 689, 728, 752, 1044, 1105
HpySE526I ACGT 1 cut(s) 1011
Hsp92II CATG 8 cut(s) 22, 77, 430, 440, 776, 985, 992, 1113
HspAI GCGC 1 cut(s) 1023
Ksp22I TGATCA 1 cut(s) 895
Kzo9I GATC 3 cut(s) 385, 895, 933
Lsp1109I GCAGC 4 cut(s) 100, 122, 433, 554
LweI GCATC 3 cut(s) 433, 477, 974
MaeI CTAG 2 cut(s) 332, 840
MaeII ACGT 1 cut(s) 1011
MaeIII GTNAC 2 cut(s) 53, 69
MalI GATC 3 cut(s) 387, 897, 935
MboI GATC 3 cut(s) 385, 895, 933
MboII GAAGA 1 cut(s) 428
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 2 cut(s) 365, 587
MlsI TGGCCA 1 cut(s) 785
MluCI AATT 7 cut(s) 138, 151, 216, 601, 758, 828, 1098
MluNI TGGCCA 1 cut(s) 785
MlyI GAGTC 1 cut(s) 979
MmeI TCCRAC 2 cut(s) 202, 979
MnlI CCTC 8 cut(s) 499, 624, 690, 904, 946, 995, 1039, 1057
Mox20I TGGCCA 1 cut(s) 785
Mph1103I ATGCAT 2 cut(s) 967, 1129
MscI TGGCCA 1 cut(s) 785
MseI TTAA 2 cut(s) 579, 596
MslI CAYNNNNRTG 2 cut(s) 441, 903
Msp20I TGGCCA 1 cut(s) 785
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 3 cut(s) 233, 694, 703
MspR9I CCNGG 5 cut(s) 118, 233, 704, 1069, 1088
MvaI CCWGG 3 cut(s) 118, 1069, 1088
MwoI GCNNNNNNNGC 6 cut(s) 377, 452, 461, 962, 1031, 1073
NciI CCSGG 2 cut(s) 233, 704
NdeI CATATG 1 cut(s) 451
NdeII GATC 3 cut(s) 385, 895, 933
NlaIII CATG 8 cut(s) 22, 77, 430, 440, 776, 985, 992, 1113
NlaIV GGNNCC 3 cut(s) 122, 701, 837
NsbI TGCGCA 1 cut(s) 1024
NsiI ATGCAT 2 cut(s) 967, 1129
NspI RCATGY 3 cut(s) 22, 430, 1113
NspV TTCGAA 1 cut(s) 766
PagI TCATGA 1 cut(s) 981
PceI AGGCCT 1 cut(s) 1067
PfeI GAWTC 2 cut(s) 225, 616
PkrI GCNGC 4 cut(s) 112, 115, 448, 569
PleI GAGTC 1 cut(s) 979
PpsI GAGTC 1 cut(s) 979
Ppu21I YACGTR 1 cut(s) 1012
PshBI ATTAAT 1 cut(s) 596
Psp6I CCWGG 3 cut(s) 116, 1067, 1086
PspGI CCWGG 3 cut(s) 116, 1067, 1086
PspN4I GGNNCC 3 cut(s) 122, 701, 837
PspPI GGNCC 2 cut(s) 121, 246
PstNI CAGNNNCTG 1 cut(s) 974
PsuI RGATCY 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 2 cut(s) 82, 917
RsaNI GTAC 2 cut(s) 81, 916
RseI CAYNNNNRTG 2 cut(s) 441, 903
SalI GTCGAC 1 cut(s) 610
SaqAI TTAA 2 cut(s) 579, 596
SatI GCNGC 4 cut(s) 111, 114, 447, 568
Sau3AI GATC 3 cut(s) 385, 895, 933
Sau96I GGNCC 2 cut(s) 121, 246
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 1 cut(s) 979
ScrFI CCNGG 5 cut(s) 118, 233, 704, 1069, 1088
SduI GDGCHC 2 cut(s) 365, 587
SfaNI GCATC 3 cut(s) 433, 477, 974
SfcI CTRYAG 1 cut(s) 381
SfuI TTCGAA 1 cut(s) 766
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 2 cut(s) 441, 903
Sse9I AATT 7 cut(s) 138, 151, 216, 601, 758, 828, 1098
SseBI AGGCCT 1 cut(s) 1067
SsiI CCGC 5 cut(s) 60, 369, 533, 879, 1076
SspMI CTAG 2 cut(s) 332, 840
StuI AGGCCT 1 cut(s) 1067
StyD4I CCNGG 5 cut(s) 116, 231, 702, 1067, 1086
StyI CCWWGG 1 cut(s) 852
TaaI ACNGT 3 cut(s) 563, 609, 1020
TaiI ACGT 1 cut(s) 1014
TaqI TCGA 3 cut(s) 611, 766, 1060
TasI AATT 7 cut(s) 138, 151, 216, 601, 758, 828, 1098
TatI WGTACW 2 cut(s) 80, 915
TfiI GAWTC 2 cut(s) 225, 616
Tru1I TTAA 2 cut(s) 579, 596
Tru9I TTAA 2 cut(s) 579, 596
TscAI CASTG 4 cut(s) 382, 405, 612, 649
TseI GCWGC 4 cut(s) 110, 113, 446, 567
TspDTI ATGAA 4 cut(s) 32, 425, 481, 970
TspRI CASTG 4 cut(s) 382, 405, 612, 649
VpaK11BI GGWCC 1 cut(s) 121
VspI ATTAAT 1 cut(s) 596
XapI RAATTY 3 cut(s) 151, 601, 758
XceI RCATGY 3 cut(s) 22, 430, 1113
XmiI GTMKAC 2 cut(s) 611, 1008
XspI CTAG 2 cut(s) 332, 840
ZrmI AGTACT 1 cut(s) 82
Zsp2I ATGCAT 2 cut(s) 967, 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.