Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001466

Physical Location & Seq

Genomic Coordinates Reverse (-)

35122628 .. 35126171

Gene Structure 3544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1256900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGGTAGCTTAAATATTGACAATCCACCTGAAAACAACTCTGTCCACCACATGACTAAAGACCCTCTGGACCTTGTGGCGTTCAGGAGACAAGGACACATGATGATAGACTTCATTGCAGATTATTACCAAAACATAGAAAAACACCCGATTCTAAGCCAAGTCCAACCGGGCTATCTTCGAAAACGTTTGCCAGAATCTGCCCCATATCACCCTGAACCCATAGAAGCCATCCTCCAAGATGTTCAGGACCATATTGTTCCTGGCATAACACATTGGCAAAACCCTAACCACTTTGCCTACTTTCCTGCAACTATCAGCACGGCAGGATTCCTCGGCGAAATGCTCACCACGGGATTCAATGTCGTGGGGTTCAACTGGATGGCATCACCAGCTGCAACTGAGCTTGAAACCGTAGTCATGGATTGGCCTGGAGACATGCTCAAACTTCCCAAGTCTTTTCTTTTTTCTGACAATGGTGGTGGTTGTAATCTGAATCTCGTTTCCGCACTGATGAACGGACCAAGGCACAACAGTGTGTTACATGGGAGTACGCATGAGTCCGTAGTTTGCACCATGGTAGCTGCAAGAGATCAAATCTTAAGTCAAATCGGTAAAGAGAATATAGGAAATTTGGTTGTGTATGGATCAGATCAAACACATAGTGCACTCCAAAAAGTTTCTCAAATTGTTGGAATCCACTCGAAAATTTTTTGGGCCATTGAGACTACAAGATCATCATCATTTGCACTCTCACCCGAATTGCTACAATTGGTGATTTGTTCAGACGTGAAATCTGGGTTGGTTCCATTTTATTTATGTGCCACAGTAGGAACAACCGCAACCGCTGCCGTTGATCCATTGGGGCCACTATGCAATGTTGCAAAAGATTATGGCATGTGGGTTCATGTGGACGCTGCATATGCCGGGAATGCTTGCATTTGCCCTGAGTTTCGTCATTTTATTGATGGAATTGAGTGTGCAAATTCGTTCAGTCTCAGTGCGCATAAATGGTTCTTCACTACTCTCAATTGTTGCTGCCTTTGGGTTAAGAATCCAAGTGCATTGACAAACTCAATGTCTGTGAATCTTGAGGGGTTGAGGAACAAGGCCACAGATTCAAAGCAAATGGTGGACAACAAAGACTGGCAGATAGCCTTAACCCGAGGGTTTCCGGCCACGAAGCTATGGCTTGTGCTTAGAAACTATGGAGTGGAAAACCTTAGAAACTTTATTAGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 ko00380 ko00901 ko00950 ko00965 ko01100 ko01110 ko04726 ko04728 ko05030 ko05031 ko05034 map00350 map00360 map00380 map00901 map00950 map00965 map01100 map01110 map04726 map04728 map05030 map05031 map05034

Pfam Domains

Protein Families

Pyridoxal_deC

Protein Analysis

415

Amino Acids

45.84

Weight (kDa)

6.13

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyridoxal_deC	PF00282	57 - 413	2.6e-88	Pyridoxal-dependent decarboxylase conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09470 FvH4_3g09472 FvH4_3g09540
malus_domestica	MD01G1040200.v1.1 MD10G1256600.v1.1 MD10G1256900.v1.1
prunus_persica	Prupe.4G087100_v2.0.a1 Prupe.6G202600_v2.0.a1
pyrus_communis	pycom01g06780 pycom10g21240
rosa_chinensis	RchiOBHm_Chr1g0324861 RchiOBHm_Chr5g0015041 RchiOBHm_Chr5g0015051 RchiOBHm_Chr6g0247151
rosa_laevigata	RLG00000030170 RLG00000032163 RLG00000032164 RLG00000032165
rosa_multiflora	Rmu_sc0004577.1_g000016 Rmu_sc0004889.1_g000027 Rmu_sc0009777.1_g000012 Rmu_sc0011258.1_g000012 Rmu_sc0041940.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061480 Rroxscaffold_1G00061490 Rroxscaffold_4G00325150 Rroxscaffold_7G00214310
rosa_rugosa	Rorug01G0048400 Rorug05G0023300 Rorug05G0023600.1 Rorug05G0523300
rosa_samantha	Rh1AG064600 Rh1BG053500 Rh1CG066100 Rh1CG066300 Rh1DG070800 Rh1DG070900 Rh5AG118300 Rh5BG115600 Rh5BG115700 Rh5BG115900 Rh5BG116200 Rh5CG126900 Rh5CG127100 Rh5DG115000 Rh5DG115100 Rh6AG038000 Rh6BG032900
rosa_wichuraiana	Rw1G005430 Rw5G010200 Rw5G010220 Rw6G003240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1005
AciI	CCGC	3 cut(s)	507, 840, 846
AclI	AACGTT	1 cut(s)	187
AclWI	GGATC	2 cut(s)	655, 851
AcoI	YGGCCR	1 cut(s)	1176
AcsI	RAATTY	4 cut(s)	631, 708, 985, 1239
AdeI	CACNNNGTG	1 cut(s)	665
AfaI	GTAC	1 cut(s)	553
AflII	CTTAAG	1 cut(s)	601
AgsI	TTSAA	4 cut(s)	361, 376, 410, 1122
AjiI	CACGTC	1 cut(s)	790
AjnI	CCWGG	2 cut(s)	262, 430
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
AleI	CACNNNNGTG	1 cut(s)	534
AluBI	AGCT	5 cut(s)	9, 395, 406, 584, 1186
AluI	AGCT	5 cut(s)	9, 395, 406, 584, 1186
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	4 cut(s)	82, 429, 719, 1001
Alw44I	GTGCAC	1 cut(s)	666
AlwI	GGATC	2 cut(s)	655, 851
AlwNI	CAGNNNCTG	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	1164
AoxI	GGCC	5 cut(s)	428, 717, 866, 1110, 1176
ApaLI	GTGCAC	1 cut(s)	666
ApeKI	GCWGC	5 cut(s)	395, 584, 848, 917, 1038
ApoI	RAATTY	4 cut(s)	631, 708, 985, 1239
ArsI	GACNNNNNNTTYG	4 cut(s)	589, 621, 1064, 1096
AspLEI	GCGC	1 cut(s)	1006
AspS9I	GGNCC	5 cut(s)	70, 250, 521, 717, 866
AsuC2I	CCSGG	2 cut(s)	171, 928
AsuHPI	GGTGA	5 cut(s)	203, 340, 381, 747, 787
AsuII	TTCGAA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	1164
AvaII	GGWCC	3 cut(s)	70, 250, 521
BaeGI	GKGCMC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	5 cut(s)	382, 571, 835, 904, 1025
BccI	CCATC	3 cut(s)	239, 376, 962
BceAI	ACGGC	2 cut(s)	339, 836
BciT130I	CCWGG	2 cut(s)	264, 432
BcnI	CCSGG	2 cut(s)	171, 928
BcoDI	GTCTC	4 cut(s)	82, 429, 719, 1001
BfrI	CTTAAG	1 cut(s)	601
BisI	GCNGC	5 cut(s)	396, 585, 849, 918, 1039
BlsI	GCNGC	5 cut(s)	397, 586, 850, 919, 1040
Bme1390I	CCNGG	4 cut(s)	171, 264, 432, 928
Bme18I	GGWCC	3 cut(s)	70, 250, 521
BmeT110I	CYCGRG	1 cut(s)	1164
BmgBI	CACGTC	1 cut(s)	790
BmgT120I	GGNCC	5 cut(s)	70, 250, 521, 717, 866
BmiI	GGNNCC	2 cut(s)	807, 867
BmrFI	CCNGG	4 cut(s)	171, 264, 432, 928
BmsI	GCATC	1 cut(s)	395
BplI	GAGNNNNNCTC	2 cut(s)	426, 458
BpmI	CTGGAG	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	1112
BpuMI	CCSGG	2 cut(s)	171, 928
BsaBI	GATNNNNATC	1 cut(s)	739
BsaJI	CCNNGG	5 cut(s)	334, 351, 524, 576, 1165
Bse1I	ACTGG	2 cut(s)	383, 1151
Bse3DI	GCAATG	2 cut(s)	114, 883
Bse8I	GATNNNNATC	1 cut(s)	739
BseBI	CCWGG	2 cut(s)	264, 432
BseDI	CCNNGG	5 cut(s)	334, 351, 524, 576, 1165
BseGI	GGATG	2 cut(s)	231, 387
BseJI	GATNNNNATC	1 cut(s)	739
BseMI	GCAATG	2 cut(s)	114, 883
BseMII	CTCAG	3 cut(s)	393, 939, 1012
BseNI	ACTGG	2 cut(s)	383, 1151
BseSI	GKGCMC	1 cut(s)	670
BseXI	GCAGC	5 cut(s)	382, 571, 835, 904, 1025
BshFI	GGCC	5 cut(s)	430, 719, 868, 1112, 1178
BsiHKAI	GWGCWC	1 cut(s)	670
BsiHKCI	CYCGRG	1 cut(s)	1164
BsiSI	CCGG	3 cut(s)	170, 927, 1175
BsmAI	GTCTC	4 cut(s)	82, 429, 719, 1001
BsmI	GAATGC	1 cut(s)	937
BsnI	GGCC	5 cut(s)	430, 719, 868, 1112, 1178
BsoBI	CYCGRG	1 cut(s)	1164
Bsp119I	TTCGAA	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	5 cut(s)	592, 647, 652, 734, 856
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	3 cut(s)	507, 840, 846
BspANI	GGCC	5 cut(s)	430, 719, 868, 1112, 1178
BspCNI	CTCAG	3 cut(s)	394, 940, 1011
BspLI	GGNNCC	2 cut(s)	807, 867
BspPI	GGATC	2 cut(s)	655, 851
BspT104I	TTCGAA	1 cut(s)	181
BspTI	CTTAAG	1 cut(s)	601
BsrDI	GCAATG	2 cut(s)	114, 883
BsrI	ACTGG	2 cut(s)	383, 1151
BssECI	CCNNGG	5 cut(s)	334, 351, 524, 576, 1165
BssMI	GATC	5 cut(s)	592, 647, 652, 734, 856
BssT1I	CCWWGG	2 cut(s)	524, 576
Bst2UI	CCWGG	2 cut(s)	264, 432
Bst4CI	ACNGT	3 cut(s)	415, 536, 829
BstAFI	CTTAAG	1 cut(s)	601
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstBI	TTCGAA	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	937
BstDEI	CTNAG	6 cut(s)	155, 402, 948, 998, 1199, 1223
BstDSI	CCRYGG	2 cut(s)	351, 576
BstF5I	GGATG	2 cut(s)	231, 387
BstHHI	GCGC	1 cut(s)	1006
BstKTI	GATC	5 cut(s)	595, 650, 655, 737, 859
BstMAI	GTCTC	4 cut(s)	82, 429, 719, 1001
BstMBI	GATC	5 cut(s)	592, 647, 652, 734, 856
BstMWI	GCNNNNNNNGC	4 cut(s)	392, 848, 923, 932
BstNI	CCWGG	2 cut(s)	264, 432
BstNSI	RCATGY	2 cut(s)	442, 901
BstSCI	CCNGG	4 cut(s)	169, 262, 430, 926
BstSLI	GKGCMC	1 cut(s)	670
BstV1I	GCAGC	5 cut(s)	382, 571, 835, 904, 1025
BsuRI	GGCC	5 cut(s)	430, 719, 868, 1112, 1178
BtgI	CCRYGG	2 cut(s)	351, 576
BtrI	CACGTC	1 cut(s)	790
BtsCI	GGATG	2 cut(s)	231, 387
BtsIMutI	CAGTG	3 cut(s)	509, 541, 1006
Cac8I	GCNNGC	1 cut(s)	937
CaiI	CAGNNNCTG	1 cut(s)	200
CfoI	GCGC	1 cut(s)	1006
Cfr13I	GGNCC	5 cut(s)	70, 250, 521, 717, 866
CseI	GACGC	1 cut(s)	923
Csp6I	GTAC	1 cut(s)	552
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	9 cut(s)	52, 100, 421, 439, 545, 557, 577, 898, 908
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	6 cut(s)	155, 402, 948, 998, 1199, 1223
DpnI	GATC	5 cut(s)	594, 649, 654, 736, 858
DpnII	GATC	5 cut(s)	592, 647, 652, 734, 856
DraIII	CACNNNGTG	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	1176
Eco130I	CCWWGG	2 cut(s)	524, 576
Eco47I	GGWCC	3 cut(s)	70, 250, 521
Eco88I	CYCGRG	1 cut(s)	1164
EcoRII	CCWGG	2 cut(s)	262, 430
EcoT14I	CCWWGG	2 cut(s)	524, 576
ErhI	CCWWGG	2 cut(s)	524, 576
FaeI	CATG	9 cut(s)	55, 103, 424, 442, 548, 560, 580, 901, 911
FatI	CATG	9 cut(s)	51, 99, 420, 438, 544, 556, 576, 897, 907
FauNDI	CATATG	1 cut(s)	922
Fnu4HI	GCNGC	5 cut(s)	396, 585, 849, 918, 1039
FokI	GGATG	2 cut(s)	218, 394
Fsp4HI	GCNGC	5 cut(s)	396, 585, 849, 918, 1039
FspAI	RTGCGCAY	1 cut(s)	1005
FspI	TGCGCA	1 cut(s)	1005
GlaI	GCGC	1 cut(s)	1005
GluI	GCNGC	5 cut(s)	396, 585, 849, 918, 1039
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	5 cut(s)	430, 719, 868, 1112, 1178
HapII	CCGG	3 cut(s)	170, 927, 1175
HgaI	GACGC	1 cut(s)	923
HhaI	GCGC	1 cut(s)	1006
Hin1II	CATG	9 cut(s)	55, 103, 424, 442, 548, 560, 580, 901, 911
Hin6I	GCGC	1 cut(s)	1004
HinP1I	GCGC	1 cut(s)	1004
HpaII	CCGG	3 cut(s)	170, 927, 1175
HphI	GGTGA	5 cut(s)	203, 340, 381, 747, 787
Hpy166II	GTNNAC	4 cut(s)	46, 668, 913, 1135
Hpy188I	TCNGA	4 cut(s)	472, 495, 652, 787
Hpy188III	TCNNGA	4 cut(s)	68, 85, 248, 1091
Hpy8I	GTNNAC	4 cut(s)	46, 668, 913, 1135
HpyCH4III	ACNGT	3 cut(s)	415, 536, 829
HpyCH4IV	ACGT	2 cut(s)	187, 789
HpyF10VI	GCNNNNNNNGC	4 cut(s)	392, 848, 923, 932
HpyF3I	CTNAG	6 cut(s)	155, 402, 948, 998, 1199, 1223
HpySE526I	ACGT	2 cut(s)	187, 789
Hsp92II	CATG	9 cut(s)	55, 103, 424, 442, 548, 560, 580, 901, 911
HspAI	GCGC	1 cut(s)	1004
Kzo9I	GATC	5 cut(s)	592, 647, 652, 734, 856
Lsp1109I	GCAGC	5 cut(s)	382, 571, 835, 904, 1025
LweI	GCATC	1 cut(s)	395
MaeII	ACGT	2 cut(s)	187, 789
MaeIII	GTNAC	1 cut(s)	540
MalI	GATC	5 cut(s)	594, 649, 654, 736, 858
MboI	GATC	5 cut(s)	592, 647, 652, 734, 856
MboII	GAAGA	2 cut(s)	170, 1009
MfeI	CAATTG	2 cut(s)	770, 1030
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	9 cut(s)	631, 687, 708, 761, 770, 972, 985, 1030, 1239
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	2 cut(s)	190, 673
MnlI	CCTC	6 cut(s)	75, 245, 344, 1087, 1095, 1160
MseI	TTAA	4 cut(s)	11, 602, 1050, 1160
MslI	CAYNNNNRTG	1 cut(s)	534
MspA1I	CMGCKG	2 cut(s)	395, 848
MspCI	CTTAAG	1 cut(s)	601
MspI	CCGG	3 cut(s)	170, 927, 1175
MspR9I	CCNGG	4 cut(s)	171, 264, 432, 928
MunI	CAATTG	2 cut(s)	770, 1030
Mva1269I	GAATGC	1 cut(s)	937
MvaI	CCWGG	2 cut(s)	264, 432
MwoI	GCNNNNNNNGC	4 cut(s)	392, 848, 923, 932
NciI	CCSGG	2 cut(s)	171, 928
NcoI	CCATGG	1 cut(s)	576
NdeI	CATATG	1 cut(s)	922
NdeII	GATC	5 cut(s)	592, 647, 652, 734, 856
NlaIII	CATG	9 cut(s)	55, 103, 424, 442, 548, 560, 580, 901, 911
NlaIV	GGNNCC	2 cut(s)	807, 867
NmeAIII	GCCGAG	1 cut(s)	315
NsbI	TGCGCA	1 cut(s)	1005
NspI	RCATGY	2 cut(s)	442, 901
NspV	TTCGAA	1 cut(s)	181
OliI	CACNNNNGTG	1 cut(s)	534
PctI	GAATGC	1 cut(s)	937
PfeI	GAWTC	9 cut(s)	151, 197, 330, 357, 496, 696, 1054, 1087, 1118
PkrI	GCNGC	5 cut(s)	397, 586, 850, 919, 1040
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp1406I	AACGTT	1 cut(s)	187
Psp6I	CCWGG	2 cut(s)	262, 430
PspGI	CCWGG	2 cut(s)	262, 430
PspN4I	GGNNCC	2 cut(s)	807, 867
PspPI	GGNCC	5 cut(s)	70, 250, 521, 717, 866
PstNI	CAGNNNCTG	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	4 cut(s)	11, 602, 1050, 1160
SatI	GCNGC	5 cut(s)	396, 585, 849, 918, 1039
Sau3AI	GATC	5 cut(s)	592, 647, 652, 734, 856
Sau96I	GGNCC	5 cut(s)	70, 250, 521, 717, 866
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	4 cut(s)	171, 264, 432, 928
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	1 cut(s)	395
SfuI	TTCGAA	1 cut(s)	181
SinI	GGWCC	3 cut(s)	70, 250, 521
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	2 cut(s)	601, 1091
SmoI	CTYRAG	2 cut(s)	601, 1091
Sse9I	AATT	9 cut(s)	631, 687, 708, 761, 770, 972, 985, 1030, 1239
SsiI	CCGC	3 cut(s)	507, 840, 846
SspI	AATATT	1 cut(s)	16
StyD4I	CCNGG	4 cut(s)	169, 262, 430, 926
StyI	CCWWGG	2 cut(s)	524, 576
TaaI	ACNGT	3 cut(s)	415, 536, 829
TaiI	ACGT	2 cut(s)	190, 792
TaqI	TCGA	2 cut(s)	181, 704
TasI	AATT	9 cut(s)	631, 687, 708, 761, 770, 972, 985, 1030, 1239
TfiI	GAWTC	9 cut(s)	151, 197, 330, 357, 496, 696, 1054, 1087, 1118
Tru1I	TTAA	4 cut(s)	11, 602, 1050, 1160
Tru9I	TTAA	4 cut(s)	11, 602, 1050, 1160
TscAI	CASTG	3 cut(s)	516, 541, 1006
TseI	GCWGC	5 cut(s)	395, 584, 848, 917, 1038
TspDTI	ATGAA	3 cut(s)	103, 530, 896
TspGWI	ACGGA	2 cut(s)	534, 553
TspRI	CASTG	3 cut(s)	516, 541, 1006
Vha464I	CTTAAG	1 cut(s)	601
VneI	GTGCAC	1 cut(s)	666
VpaK11BI	GGWCC	3 cut(s)	70, 250, 521
XapI	RAATTY	4 cut(s)	631, 708, 985, 1239
XceI	RCATGY	2 cut(s)	442, 901
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.