Rh5BG115900

Tyrosine dopa decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001466
Physical Location & Seq
Reverse (-)
10923984 .. 10925522
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG115900.1

Sequence Viewer

Length: 1539 bp
ATGGGTAGCCTCGAATTCCACCATGGTCCAGTAGAAAACAACTGTGATCCCCCCATGGCTAACCCTCTGGATCCGGAAGAATTCAGGAGACAAGGCCACATAATGATAGATTTTATTGCAGACTATTACAAGAACATAGAGAAGTACCCGGTTCTAAGCCAAGTTCAACCAGGTTATCTCAAAAAGCGCCTGCCAGAGTCTGCGCCATACAACCCCGAGCCGATTGAAACCATCCTCCAAGATGTGCGAGATCATATTGTTCCTGGTATAACACATTGGCAAAGCCCTAGCTACTTTGGCTACTTTCCTTCAAGTGGTAGCATCGCAGGGTTTCTCGGCGAAATGCTTAGCGCTGGATTCAATGTGGTTGGATTCAACTGGATGTCATCGCCTGCTGCAACTGAGCTAGAAAGCATAGTCATGGATTGGCTTGGAAACATGCTTCAACTTCCCAAATCTTTCCTTTTCTCTGGCAACGGTGGTGGTGTGTTACAAGGGACTACTTGTGAGGCCATTGTTTGCACCATGGCTGCTGCTAGAGACCAAATGCTAAGCCGAATTGGTAAAGACAACATTGGGAGGCTAGTTGTATATGGTTCAGATCAAACACATAGTGCACTGAAAAAAGCCTCCCAAATTGTTGGAATCCATCCAAACAATTTCAGGGTCATCAACACTACACAATCCACAAATTTTGCACTATCACCTGAGTTGCTGAGATCCACAATTTGTTCTGACATAGAAAAAGGGTTAGTTCCTTTGTTTCTATGTGCCACGATGGGAACAACTGCAACCACTTCTGTTGATCCATTGGGGGGACTGTGTGATGTAGCAAAAGATTATGGCATATGGATTCATGTCGATGCAGCATACGCAGGAAGTGTCTGCATTTGTCCAGAGTTTCGGCATTTCATTGAAGGCGTTGAGGGAGCAAATTCATTCAGTTTCAATGCACATAAATGGTTCTTGACAACTCTAGATTGTTGTTGCCTTTGGGTTAAGAACCCAACTGCATTGATCGATTCCTTGTCAACGAATCCAGAGTTTTTAAGGAACAAAGCCAGTGATTCAAAGCAAGTGGTGGACTACAAAGACTGGCAAATAGCACTGAGCCGAAGGTTCCGCGCATTGAAATTATGGCTCGTGCTAAGAAGCTATGGAGTAGATAATCTCAGAAACTTTCTCAGAAGCCATGTGAAAATGGCCGAGGTCTTTGAAAGGCTTGTGCGAGAGAACAAATGGTTTGAGGTTGTTATGCCTAGGAATTTCGCCATGGTCTGTTTTAGGATTTCTCCATCAGCAATTAGCAAACTGCTTCCAGGTGATGATGATGGAAGTGCTATGATAAACGAGGTCAATTGCAAGCTATTGGAGGCGATCAATGCATCAGGTGATGTATACATGACTCATGCTGTGGTTGGAGGCATGTGTGTGTTACGGTGCGCAATTGGGGCAACTCTGACAGAGGAAAAGCACATACACAGGGCCTGGAAGGTAGTGCAAGACCATGCAGATACCATCCTGAGCACGTATCAATAG

Protein Analysis

512

Amino Acids

56.92

Weight (kDa)

6.02

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 57 - 430 3.4e-115 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1444
AccI GTMKAC 1 cut(s) 1398
AccII CGCG 1 cut(s) 1125
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 1 cut(s) 1123
AclWI GGATC 5 cut(s) 41, 65, 78, 714, 800
AcoI YGGCCR 1 cut(s) 1203
AcsI RAATTY 5 cut(s) 14, 80, 691, 934, 1264
AdeI CACNNNGTG 1 cut(s) 614
AfaI GTAC 1 cut(s) 146
AfeI AGCGCT 1 cut(s) 352
AfiI CCNNNNNNNGG 2 cut(s) 314, 815
AjnI CCWGG 4 cut(s) 169, 262, 1318, 1487
AluBI AGCT 4 cut(s) 291, 406, 1155, 1366
AluI AGCT 4 cut(s) 291, 406, 1155, 1366
Alw21I GWGCWC 2 cut(s) 619, 1529
Alw26I GTCTC 2 cut(s) 82, 534
Alw44I GTGCAC 1 cut(s) 615
AlwI GGATC 5 cut(s) 41, 65, 78, 714, 800
AlwNI CAGNNNCTG 2 cut(s) 200, 1488
Ama87I CYCGRG 1 cut(s) 215
Aor13HI TCCGGA 1 cut(s) 73
Aor51HI AGCGCT 1 cut(s) 352
AoxI GGCC 4 cut(s) 94, 510, 1203, 1485
ApaLI GTGCAC 1 cut(s) 615
ApeKI GCWGC 4 cut(s) 395, 530, 533, 866
ApoI RAATTY 5 cut(s) 14, 80, 691, 934, 1264
AspA2I CCTAGG 1 cut(s) 1259
AspLEI GCGC 5 cut(s) 189, 205, 353, 1127, 1445
AspS9I GGNCC 2 cut(s) 26, 1485
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 3 cut(s) 696, 1334, 1403
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 26
AvrII CCTAGG 1 cut(s) 1259
BaeGI GKGCMC 1 cut(s) 619
BamHI GGATCC 1 cut(s) 70
BauI CACGAG 1 cut(s) 1142
Bbv12I GWGCWC 2 cut(s) 619, 1529
BbvI GCAGC 4 cut(s) 382, 517, 520, 878
BccI CCATC 6 cut(s) 239, 657, 772, 1303, 1325, 1526
BciT130I CCWGG 4 cut(s) 171, 264, 1320, 1489
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 82, 534
BfaI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
BfoI RGCGCY 2 cut(s) 190, 354
BisI GCNGC 4 cut(s) 396, 531, 534, 867
BlnI CCTAGG 1 cut(s) 1259
BlpI GCTNAGC 2 cut(s) 347, 551
BlsI GCNGC 4 cut(s) 397, 532, 535, 868
Bme1390I CCNGG 5 cut(s) 149, 171, 264, 1320, 1489
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 26, 1485
BmiI GGNNCC 2 cut(s) 72, 1121
BmrFI CCNGG 5 cut(s) 149, 171, 264, 1320, 1489
BmsI GCATC 3 cut(s) 330, 853, 1394
Bpu10I CCTNAGC 1 cut(s) 1523
Bpu1102I GCTNAGC 2 cut(s) 347, 551
BpuMI CCSGG 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 1020
BsaAI YACGTR 1 cut(s) 1530
BsaI GGTCTC 1 cut(s) 534
BsaJI CCNNGG 6 cut(s) 22, 54, 525, 1206, 1259, 1272
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 815
Bse1I ACTGG 4 cut(s) 29, 383, 1062, 1100
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 4 cut(s) 171, 264, 1320, 1489
BseCI ATCGAT 1 cut(s) 1020
BseDI CCNNGG 6 cut(s) 22, 54, 525, 1206, 1259, 1272
BseGI GGATG 4 cut(s) 231, 387, 649, 1518
BseLI CCNNNNNNNGG 2 cut(s) 314, 815
BseMII CTCAG 7 cut(s) 393, 699, 707, 1100, 1186, 1198, 1514
BseNI ACTGG 4 cut(s) 29, 383, 1062, 1100
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 4 cut(s) 382, 517, 520, 878
Bsh1236I CGCG 1 cut(s) 1125
BshFI GGCC 4 cut(s) 96, 512, 1205, 1487
BshVI ATCGAT 1 cut(s) 1020
BsiHKAI GWGCWC 2 cut(s) 619, 1529
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 2 cut(s) 74, 149
BslFI GGGAC 2 cut(s) 511, 831
BslI CCNNNNNNNGG 2 cut(s) 314, 815
BsmAI GTCTC 2 cut(s) 82, 534
BsmFI GGGAC 2 cut(s) 511, 831
BsnI GGCC 4 cut(s) 96, 512, 1205, 1487
Bso31I GGTCTC 1 cut(s) 534
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 619, 1529
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
Bsp1720I GCTNAGC 2 cut(s) 347, 551
Bsp19I CCATGG 4 cut(s) 22, 54, 525, 1272
BspACI CCGC 1 cut(s) 1123
BspANI GGCC 4 cut(s) 96, 512, 1205, 1487
BspCNI CTCAG 7 cut(s) 394, 700, 708, 1101, 1185, 1197, 1515
BspDI ATCGAT 1 cut(s) 1020
BspEI TCCGGA 1 cut(s) 73
BspFNI CGCG 1 cut(s) 1125
BspLI GGNNCC 2 cut(s) 72, 1121
BspPI GGATC 5 cut(s) 41, 65, 78, 714, 800
BspTNI GGTCTC 1 cut(s) 534
BsrI ACTGG 4 cut(s) 29, 383, 1062, 1100
BssECI CCNNGG 6 cut(s) 22, 54, 525, 1206, 1259, 1272
BssMI GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
BssNAI GTATAC 1 cut(s) 1399
BssSI CACGAG 1 cut(s) 1142
BssT1I CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
Bst1107I GTATAC 1 cut(s) 1399
Bst2BI CACGAG 1 cut(s) 1142
Bst2UI CCWGG 4 cut(s) 171, 264, 1320, 1489
Bst4CI ACNGT 4 cut(s) 44, 479, 822, 1440
BstBAI YACGTR 1 cut(s) 1530
BstC8I GCNNGC 3 cut(s) 191, 393, 1364
BstDSI CCRYGG 4 cut(s) 22, 54, 525, 1272
BstF5I GGATG 4 cut(s) 231, 387, 649, 1518
BstFNI CGCG 1 cut(s) 1125
BstH2I RGCGCY 2 cut(s) 190, 354
BstHHI GCGC 5 cut(s) 189, 205, 353, 1127, 1445
BstKTI GATC 8 cut(s) 49, 73, 253, 604, 722, 808, 1020, 1380
BstMAI GTCTC 2 cut(s) 82, 534
BstMBI GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
BstMWI GCNNNNNNNGC 4 cut(s) 297, 872, 1382, 1451
BstNI CCWGG 4 cut(s) 171, 264, 1320, 1489
BstNSI RCATGY 2 cut(s) 442, 1429
BstSCI CCNGG 5 cut(s) 147, 169, 262, 1318, 1487
BstSLI GKGCMC 1 cut(s) 619
BstUI CGCG 1 cut(s) 1125
BstV1I GCAGC 4 cut(s) 382, 517, 520, 878
BstX2I RGATCY 2 cut(s) 70, 719
BstXI CCANNNNNNTGG 1 cut(s) 641
BstYI RGATCY 2 cut(s) 70, 719
BstZ17I GTATAC 1 cut(s) 1399
Bsu15I ATCGAT 1 cut(s) 1020
BsuRI GGCC 4 cut(s) 96, 512, 1205, 1487
BsuTUI ATCGAT 1 cut(s) 1020
BtgI CCRYGG 4 cut(s) 22, 54, 525, 1272
BtgZI GCGATG 2 cut(s) 307, 372
BtsCI GGATG 4 cut(s) 231, 387, 649, 1518
BtsIMutI CAGTG 3 cut(s) 617, 1069, 1106
Cac8I GCNNGC 3 cut(s) 191, 393, 1364
CaiI CAGNNNCTG 2 cut(s) 200, 1488
CfoI GCGC 5 cut(s) 189, 205, 353, 1127, 1445
Cfr13I GGNCC 2 cut(s) 26, 1485
ClaI ATCGAT 1 cut(s) 1020
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 1 cut(s) 145
CspCI CAANNNNNGTGG 8 cut(s) 463, 498, 676, 711, 784, 819, 1059, 1094
CviQI GTAC 1 cut(s) 145
DpnI GATC 8 cut(s) 48, 72, 252, 603, 721, 807, 1019, 1379
DpnII GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
DraIII CACNNNGTG 1 cut(s) 614
EaeI YGGCCR 1 cut(s) 1203
Eco130I CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
Eco31I GGTCTC 1 cut(s) 534
Eco47I GGWCC 1 cut(s) 26
Eco47III AGCGCT 1 cut(s) 352
Eco88I CYCGRG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 1485
EcoRI GAATTC 2 cut(s) 14, 80
EcoRII CCWGG 4 cut(s) 169, 262, 1318, 1487
EcoT14I CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
EcoT22I ATGCAT 1 cut(s) 1387
ErhI CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
FaqI GGGAC 2 cut(s) 511, 831
FauNDI CATATG 1 cut(s) 848
FblI GTMKAC 1 cut(s) 1398
Fnu4HI GCNGC 4 cut(s) 396, 531, 534, 867
FokI GGATG 4 cut(s) 218, 394, 636, 1505
Fsp4HI GCNGC 4 cut(s) 396, 531, 534, 867
FspBI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
FspI TGCGCA 1 cut(s) 1444
GlaI GCGC 5 cut(s) 188, 204, 352, 1126, 1444
GluI GCNGC 4 cut(s) 396, 531, 534, 867
HaeII RGCGCY 2 cut(s) 190, 354
HaeIII GGCC 4 cut(s) 96, 512, 1205, 1487
HapII CCGG 2 cut(s) 74, 149
HhaI GCGC 5 cut(s) 189, 205, 353, 1127, 1445
Hin6I GCGC 5 cut(s) 187, 203, 351, 1125, 1443
HinP1I GCGC 5 cut(s) 187, 203, 351, 1125, 1443
HincII GTYRAC 1 cut(s) 1032
HindII GTYRAC 1 cut(s) 1032
HinfI GANTC 9 cut(s) 197, 357, 372, 645, 853, 1022, 1036, 1067, 1405
HpaII CCGG 2 cut(s) 74, 149
HphI GGTGA 3 cut(s) 696, 1334, 1403
Hpy166II GTNNAC 4 cut(s) 617, 1032, 1084, 1399
Hpy188I TCNGA 5 cut(s) 601, 736, 1175, 1187, 1461
Hpy188III TCNNGA 8 cut(s) 68, 74, 85, 896, 967, 977, 1040, 1522
Hpy8I GTNNAC 4 cut(s) 617, 1032, 1084, 1399
HpyAV CCTTC 4 cut(s) 318, 911, 1110, 1486
HpyCH4III ACNGT 4 cut(s) 44, 479, 822, 1440
HpyCH4IV ACGT 1 cut(s) 1529
HpyF10VI GCNNNNNNNGC 4 cut(s) 297, 872, 1382, 1451
HpySE526I ACGT 1 cut(s) 1529
HspAI GCGC 5 cut(s) 187, 203, 351, 1125, 1443
Kpn2I TCCGGA 1 cut(s) 73
Kzo9I GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
LmnI GCTCC 1 cut(s) 929
Lsp1109I GCAGC 4 cut(s) 382, 517, 520, 878
LweI GCATC 3 cut(s) 330, 853, 1394
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
MaeII ACGT 1 cut(s) 1529
MaeIII GTNAC 2 cut(s) 489, 1434
MalI GATC 8 cut(s) 48, 72, 252, 603, 721, 807, 1019, 1379
MboI GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
MboII GAAGA 1 cut(s) 89
MfeI CAATTG 2 cut(s) 1357, 1446
MflI RGATCY 2 cut(s) 70, 719
MhlI GDGCHC 2 cut(s) 619, 1529
MlyI GAGTC 2 cut(s) 206, 1399
MmeI TCCRAC 3 cut(s) 349, 622, 1399
Mph1103I ATGCAT 1 cut(s) 1387
MroI TCCGGA 1 cut(s) 73
MseI TTAA 2 cut(s) 999, 1049
MslI CAYNNNNRTG 4 cut(s) 419, 861, 958, 1430
MspI CCGG 2 cut(s) 74, 149
MspR9I CCNGG 5 cut(s) 149, 171, 264, 1320, 1489
MunI CAATTG 2 cut(s) 1357, 1446
MvaI CCWGG 4 cut(s) 171, 264, 1320, 1489
MvnI CGCG 1 cut(s) 1125
MwoI GCNNNNNNNGC 4 cut(s) 297, 872, 1382, 1451
NciI CCSGG 1 cut(s) 149
NcoI CCATGG 4 cut(s) 22, 54, 525, 1272
NdeI CATATG 1 cut(s) 848
NdeII GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
NlaIV GGNNCC 2 cut(s) 72, 1121
NmeAIII GCCGAG 2 cut(s) 315, 1231
NsbI TGCGCA 1 cut(s) 1444
NsiI ATGCAT 1 cut(s) 1387
NspI RCATGY 2 cut(s) 442, 1429
PfeI GAWTC 7 cut(s) 357, 372, 645, 853, 1022, 1036, 1067
PkrI GCNGC 4 cut(s) 397, 532, 535, 868
PleI GAGTC 2 cut(s) 205, 1399
PpsI GAGTC 2 cut(s) 205, 1399
Ppu21I YACGTR 1 cut(s) 1530
Psp6I CCWGG 4 cut(s) 169, 262, 1318, 1487
PspGI CCWGG 4 cut(s) 169, 262, 1318, 1487
PspN4I GGNNCC 2 cut(s) 72, 1121
PspPI GGNCC 2 cut(s) 26, 1485
PstNI CAGNNNCTG 2 cut(s) 200, 1488
PsuI RGATCY 2 cut(s) 70, 719
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 4 cut(s) 419, 861, 958, 1430
SaqAI TTAA 2 cut(s) 999, 1049
SatI GCNGC 4 cut(s) 396, 531, 534, 867
Sau3AI GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
Sau96I GGNCC 2 cut(s) 26, 1485
SchI GAGTC 2 cut(s) 206, 1399
ScrFI CCNGG 5 cut(s) 149, 171, 264, 1320, 1489
SduI GDGCHC 2 cut(s) 619, 1529
SexAI ACCWGGT 1 cut(s) 169
SfaNI GCATC 3 cut(s) 330, 853, 1394
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 4 cut(s) 419, 861, 958, 1430
SsiI CCGC 1 cut(s) 1123
SspMI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
StyD4I CCNGG 5 cut(s) 147, 169, 262, 1318, 1487
StyI CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
TaaI ACNGT 4 cut(s) 44, 479, 822, 1440
TaiI ACGT 1 cut(s) 1532
TaqI TCGA 3 cut(s) 12, 861, 1020
TfiI GAWTC 7 cut(s) 357, 372, 645, 853, 1022, 1036, 1067
Tru1I TTAA 2 cut(s) 999, 1049
Tru9I TTAA 2 cut(s) 999, 1049
TscAI CASTG 3 cut(s) 624, 1069, 1113
TseI GCWGC 4 cut(s) 395, 530, 533, 866
TspDTI ATGAA 3 cut(s) 845, 901, 927
TspRI CASTG 3 cut(s) 624, 1069, 1113
VneI GTGCAC 1 cut(s) 615
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 5 cut(s) 14, 80, 691, 934, 1264
XbaI TCTAGA 1 cut(s) 976
XceI RCATGY 2 cut(s) 442, 1429
XmaJI CCTAGG 1 cut(s) 1259
XmiI GTMKAC 1 cut(s) 1398
XspI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
Zsp2I ATGCAT 1 cut(s) 1387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.