Rh5BG115600

Tyrosine dopa decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001466
Physical Location & Seq
Forward (+)
10854684 .. 10856295
1612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG115600.1

Sequence Viewer

Length: 1527 bp
ATGGGTAGCCAACCATTCCACCATGATTCACATGAAACCACCTCTGCCCACATCACCAAATCCCTAGACCCTGAAGAATTCAGGAAACAAGGCCACATGGTCATAGACTTCATCGCAGATTATTACCAAAACATAGAGAAATACCCAGTTCTAAGCCGAGTGCAACCTGGTTATTTGAGAAAATGCCTACCAGATTCTGCCCCATATGACCCTGAACCCATATCAACCATCCTTAAAGATGTTCAGGATCACATTGTTCCTGGCCTAACACATTGGCAAAGTCCCAATTTCTTTGCATACTTCTCTTCAACTGCTAGCACTGCTGGGTTTCTCGGTGAAATGCTCACCACTGGATTTAATGTGGTGGGGTTCAACTGGGTTTCATCACCAGCAGCAACCGAGCTCGAAAACATAGTCATGGATTGGTTGGGAGACATGCTTCAGCTTCCGAAGTCTTTCCATTTCTCTGGCAACGGCGGCGGTGTGTTACATGGGAGTACTTGTGAGGCCATTGTTTGCACAATGGCAGCTGCCAGGGACCAAACGCTAAGCCAAATTGGTAGCGAGAATTTGGGAAAGCTTGTTGTGTATGGTTCAGACCAAACACATAGCACACTTCAAAAAGCTTCCCAAATTGTTGGAATCAAAATGGAGAACTTCCGGCCCATCAAGACTACAAAGTTAACTGGATTTGCACTATCACCTGAGAGTCTAAGATTGACAATAAGGTCAGACCTGGAAAAAGGGCTCGTGCCACTCTTTTTATGTGCCACAGTGGGCACAACCGCAACCACCGCTATTGATCCATTGGAGGCACTGTGTCATGTAGCAAAAGAATACGGCGTGTGGGTTCATGTGGATGCTGCATATGCCGGAAGTGCATGCATTTGTCCAGAGTTTCGGCATTTCATTGATGGTGTCGAGGGCGCAAACTCTTTTACTTTTAACCCCCATAAGTCGTTATTCACTGGAATGGATTGCTGCTGCCTTTGGGTGAAGAATCCAAGTGCATTGGTACTTTCACTGTCAACGAATCCAGAGTATTTGAGGAACACAGCCAGTGACACAAAGCAAGTTGTGGACTACAAAGACTGGCAAATAGCACTGAGCCGGAGGTTCCGAGCATTGAGGCTATGGCTTGTGCTAAGAAGCTACGGCGTGGCTAACCTTAGAAACTTTATTCGTAGCCATGTCAAAATGGCCAAGACTTTTGAAGGGCTTGTGAGAATGGACAAGAGGTTTGAGATTGTGGTGCCTAGAACCTTCTCCTTGGTGTGCTTTAGAATTTCACCATTGGCATTGATCCGTAGTGATAAGGATGGTGAGATCGGTATGATAAAGGAGGTCAATTGCAAGCTGCTAGAGGCCATCAATGCGTCAGGTAAAGCGTACATGACTCATGCTGTGGTTGGAGGTACCTTCCTGCTGCGGTGCGCCATTGGTGCTACTCTGACAGAAGAAAAGCACATAGTCCAGGCTTGGAAGGTGGTGCAGGACCATGCACAAGCCATCCTCAATATGCACTGA

Protein Analysis

508

Amino Acids

56.35

Weight (kDa)

7.02

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 56 - 429 3.1e-113 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 727
Acc65I GGTACC 1 cut(s) 1415
AccB1I GGYRCC 2 cut(s) 1252, 1415
AciI CCGC 5 cut(s) 477, 480, 786, 795, 1429
AclWI GGATC 3 cut(s) 255, 797, 1297
AcoI YGGCCR 1 cut(s) 1200
AcsI RAATTY 3 cut(s) 77, 568, 1284
AcuI CTGAAG 2 cut(s) 93, 425
AfaI GTAC 4 cut(s) 499, 1017, 1391, 1417
AgsI TTSAA 4 cut(s) 309, 373, 620, 1214
AjnI CCWGG 5 cut(s) 166, 259, 533, 735, 1473
AluBI AGCT 7 cut(s) 403, 445, 530, 580, 626, 1152, 1357
AluI AGCT 7 cut(s) 403, 445, 530, 580, 626, 1152, 1357
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 3 cut(s) 255, 797, 1297
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 6 cut(s) 91, 262, 507, 662, 1200, 1365
ApeKI GCWGC 8 cut(s) 392, 527, 530, 863, 981, 984, 1357, 1426
ApoI RAATTY 3 cut(s) 77, 568, 1284
ArsI GACNNNNNNTTYG 4 cut(s) 399, 431, 1223, 1255
Asp700I GAANNNNTTC 1 cut(s) 455
Asp718I GGTACC 1 cut(s) 1415
AspLEI GCGC 2 cut(s) 929, 1436
AspS9I GGNCC 3 cut(s) 538, 663, 1495
AsuHPI GGTGA 8 cut(s) 46, 337, 347, 378, 693, 1006, 1281, 1334
AsuNHI GCTAGC 1 cut(s) 314
AvaII GGWCC 2 cut(s) 538, 1495
BaeGI GKGCMC 1 cut(s) 782
BalI TGGCCA 1 cut(s) 1202
BanI GGYRCC 2 cut(s) 1252, 1415
BanII GRGCYC 2 cut(s) 405, 750
BauI CACGAG 1 cut(s) 749
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 8 cut(s) 404, 517, 539, 850, 968, 971, 1344, 1413
BccI CCATC 6 cut(s) 236, 674, 908, 1313, 1376, 1517
BceAI ACGGC 3 cut(s) 490, 856, 1171
BciT130I CCWGG 5 cut(s) 168, 261, 535, 737, 1475
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 4 cut(s) 65, 315, 1257, 1361
BisI GCNGC 9 cut(s) 393, 478, 528, 531, 864, 982, 985, 1358, 1427
BlpI GCTNAGC 1 cut(s) 548
BlsI GCNGC 9 cut(s) 394, 479, 529, 532, 865, 983, 986, 1359, 1428
BmcAI AGTACT 1 cut(s) 499
Bme1390I CCNGG 5 cut(s) 168, 261, 535, 737, 1475
Bme18I GGWCC 2 cut(s) 538, 1495
BmgT120I GGNCC 3 cut(s) 538, 663, 1495
BmiI GGNNCC 4 cut(s) 539, 1118, 1254, 1417
BmrFI CCNGG 5 cut(s) 168, 261, 535, 737, 1475
BmrI ACTGGG 2 cut(s) 140, 385
BmsI GCATC 1 cut(s) 850
BmtI GCTAGC 1 cut(s) 318
BmuI ACTGGG 2 cut(s) 140, 385
Bpu1102I GCTNAGC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 534, 1269
BsaXI ACNNNNNCTCC 4 cut(s) 487, 517, 803, 833
Bse1I ACTGG 7 cut(s) 146, 355, 380, 691, 973, 1059, 1097
BseBI CCWGG 5 cut(s) 168, 261, 535, 737, 1475
BseDI CCNNGG 2 cut(s) 534, 1269
BseGI GGATG 4 cut(s) 228, 865, 1324, 1509
BseMII CTCAG 2 cut(s) 696, 1097
BseNI ACTGG 7 cut(s) 146, 355, 380, 691, 973, 1059, 1097
BseSI GKGCMC 1 cut(s) 782
BseXI GCAGC 8 cut(s) 404, 517, 539, 850, 968, 971, 1344, 1413
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 1511
BshFI GGCC 6 cut(s) 93, 264, 509, 664, 1202, 1367
BshNI GGYRCC 2 cut(s) 1252, 1415
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 3 cut(s) 661, 873, 1111
BslFI GGGAC 2 cut(s) 267, 551
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 2 cut(s) 267, 551
BsnI GGCC 6 cut(s) 93, 264, 509, 664, 1202, 1367
Bsp1286I GDGCHC 3 cut(s) 405, 750, 782
Bsp143I GATC 4 cut(s) 247, 802, 1302, 1326
Bsp1720I GCTNAGC 1 cut(s) 548
BspACI CCGC 5 cut(s) 477, 480, 786, 795, 1429
BspANI GGCC 6 cut(s) 93, 264, 509, 664, 1202, 1367
BspCNI CTCAG 2 cut(s) 697, 1098
BspLI GGNNCC 4 cut(s) 539, 1118, 1254, 1417
BspOI GCTAGC 1 cut(s) 318
BspPI GGATC 3 cut(s) 255, 797, 1297
BspT107I GGYRCC 2 cut(s) 1252, 1415
BsrI ACTGG 7 cut(s) 146, 355, 380, 691, 973, 1059, 1097
BssECI CCNNGG 2 cut(s) 534, 1269
BssMI GATC 4 cut(s) 247, 802, 1302, 1326
BssSI CACGAG 1 cut(s) 749
BssT1I CCWWGG 1 cut(s) 1269
Bst2BI CACGAG 1 cut(s) 749
Bst2UI CCWGG 5 cut(s) 168, 261, 535, 737, 1475
Bst4CI ACNGT 3 cut(s) 775, 819, 1026
Bst6I CTCTTC 1 cut(s) 310
BstC8I GCNNGC 3 cut(s) 316, 883, 1355
BstDEI CTNAG 7 cut(s) 152, 548, 705, 713, 1106, 1145, 1169
BstF5I GGATG 4 cut(s) 228, 865, 1324, 1509
BstHHI GCGC 2 cut(s) 929, 1436
BstKTI GATC 4 cut(s) 250, 805, 1305, 1329
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 4 cut(s) 247, 802, 1302, 1326
BstMWI GCNNNNNNNGC 7 cut(s) 320, 477, 794, 869, 878, 1373, 1442
BstNI CCWGG 5 cut(s) 168, 261, 535, 737, 1475
BstNSI RCATGY 2 cut(s) 439, 885
BstSCI CCNGG 5 cut(s) 166, 259, 533, 735, 1473
BstSLI GKGCMC 1 cut(s) 782
BstV1I GCAGC 8 cut(s) 404, 517, 539, 850, 968, 971, 1344, 1413
BstXI CCANNNNNNTGG 2 cut(s) 467, 638
BsuRI GGCC 6 cut(s) 93, 264, 509, 664, 1202, 1367
BtgZI GCGATG 1 cut(s) 97
BtsCI GGATG 4 cut(s) 228, 865, 1324, 1509
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 9 cut(s) 318, 348, 780, 815, 966, 1022, 1066, 1103, 1522
Cac8I GCNNGC 3 cut(s) 316, 883, 1355
CaiI CAGNNNCTG 1 cut(s) 197
CfoI GCGC 2 cut(s) 929, 1436
Cfr13I GGNCC 3 cut(s) 538, 663, 1495
CseI GACGC 1 cut(s) 1365
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 4 cut(s) 498, 1016, 1390, 1416
CspCI CAANNNNNGTGG 2 cut(s) 781, 816
CviQI GTAC 4 cut(s) 498, 1016, 1390, 1416
DdeI CTNAG 7 cut(s) 152, 548, 705, 713, 1106, 1145, 1169
DpnI GATC 4 cut(s) 249, 804, 1304, 1328
DpnII GATC 4 cut(s) 247, 802, 1302, 1326
DrdI GACNNNNNNGTC 1 cut(s) 727
DseDI GACNNNNNNGTC 1 cut(s) 727
EaeI YGGCCR 1 cut(s) 1200
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 1269
Eco24I GRGCYC 2 cut(s) 405, 750
Eco47I GGWCC 2 cut(s) 538, 1495
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 2 cut(s) 93, 425
EcoICRI GAGCTC 1 cut(s) 403
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 5 cut(s) 166, 259, 533, 735, 1473
EcoT14I CCWWGG 1 cut(s) 1269
EcoT22I ATGCAT 1 cut(s) 887
EcoT38I GRGCYC 2 cut(s) 405, 750
ErhI CCWWGG 1 cut(s) 1269
FaqI GGGAC 2 cut(s) 267, 551
FauNDI CATATG 2 cut(s) 205, 868
Fnu4HI GCNGC 9 cut(s) 393, 478, 528, 531, 864, 982, 985, 1358, 1427
FokI GGATG 4 cut(s) 215, 872, 1331, 1496
FriOI GRGCYC 2 cut(s) 405, 750
Fsp4HI GCNGC 9 cut(s) 393, 478, 528, 531, 864, 982, 985, 1358, 1427
FspBI CTAG 4 cut(s) 65, 315, 1257, 1361
GlaI GCGC 2 cut(s) 928, 1435
GluI GCNGC 9 cut(s) 393, 478, 528, 531, 864, 982, 985, 1358, 1427
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 6 cut(s) 93, 264, 509, 664, 1202, 1367
HapII CCGG 3 cut(s) 661, 873, 1111
HgaI GACGC 1 cut(s) 1365
HhaI GCGC 2 cut(s) 929, 1436
Hin6I GCGC 2 cut(s) 927, 1434
HinP1I GCGC 2 cut(s) 927, 1434
HincII GTYRAC 2 cut(s) 684, 1029
HindII GTYRAC 2 cut(s) 684, 1029
HindIII AAGCTT 2 cut(s) 578, 624
HinfI GANTC 7 cut(s) 26, 194, 642, 709, 1000, 1033, 1396
HpaI GTTAAC 1 cut(s) 684
HpaII CCGG 3 cut(s) 661, 873, 1111
HphI GGTGA 8 cut(s) 46, 337, 347, 378, 693, 1006, 1281, 1334
Hpy166II GTNNAC 3 cut(s) 684, 1029, 1081
Hpy188I TCNGA 5 cut(s) 450, 598, 733, 1121, 1452
Hpy188III TCNNGA 5 cut(s) 82, 245, 670, 893, 1037
Hpy8I GTNNAC 3 cut(s) 684, 1029, 1081
HpyAV CCTTC 4 cut(s) 1208, 1273, 1429, 1477
HpyCH4III ACNGT 3 cut(s) 775, 819, 1026
HpyF10VI GCNNNNNNNGC 7 cut(s) 320, 477, 794, 869, 878, 1373, 1442
HpyF3I CTNAG 7 cut(s) 152, 548, 705, 713, 1106, 1145, 1169
HspAI GCGC 2 cut(s) 927, 1434
KpnI GGTACC 1 cut(s) 1419
KspAI GTTAAC 1 cut(s) 684
Kzo9I GATC 4 cut(s) 247, 802, 1302, 1326
Lsp1109I GCAGC 8 cut(s) 404, 517, 539, 850, 968, 971, 1344, 1413
LweI GCATC 1 cut(s) 850
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 4 cut(s) 65, 315, 1257, 1361
MaeIII GTNAC 2 cut(s) 486, 1061
MalI GATC 4 cut(s) 249, 804, 1304, 1328
MboI GATC 4 cut(s) 247, 802, 1302, 1326
MboII GAAGA 4 cut(s) 86, 297, 1009, 1469
MfeI CAATTG 1 cut(s) 1348
MhlI GDGCHC 3 cut(s) 405, 750, 782
MlsI TGGCCA 1 cut(s) 1202
MluCI AATT 7 cut(s) 77, 286, 555, 568, 633, 1284, 1348
MluNI TGGCCA 1 cut(s) 1202
MlyI GAGTC 2 cut(s) 718, 1390
MmeI TCCRAC 2 cut(s) 619, 1390
Mox20I TGGCCA 1 cut(s) 1202
Mph1103I ATGCAT 1 cut(s) 887
MroXI GAANNNNTTC 1 cut(s) 455
MscI TGGCCA 1 cut(s) 1202
MseI TTAA 4 cut(s) 234, 357, 683, 945
MslI CAYNNNNRTG 3 cut(s) 416, 858, 971
Msp20I TGGCCA 1 cut(s) 1202
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 3 cut(s) 661, 873, 1111
MspR9I CCNGG 5 cut(s) 168, 261, 535, 737, 1475
MunI CAATTG 1 cut(s) 1348
MvaI CCWGG 5 cut(s) 168, 261, 535, 737, 1475
MwoI GCNNNNNNNGC 7 cut(s) 320, 477, 794, 869, 878, 1373, 1442
NdeI CATATG 2 cut(s) 205, 868
NdeII GATC 4 cut(s) 247, 802, 1302, 1326
NheI GCTAGC 1 cut(s) 314
NlaIV GGNNCC 4 cut(s) 539, 1118, 1254, 1417
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 1061
NsiI ATGCAT 1 cut(s) 887
NspI RCATGY 2 cut(s) 439, 885
PaeI GCATGC 1 cut(s) 885
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 5 cut(s) 26, 194, 642, 1000, 1033
PkrI GCNGC 9 cut(s) 394, 479, 529, 532, 865, 983, 986, 1359, 1428
PleI GAGTC 2 cut(s) 717, 1390
PpsI GAGTC 2 cut(s) 717, 1390
Psp124BI GAGCTC 1 cut(s) 405
Psp6I CCWGG 5 cut(s) 166, 259, 533, 735, 1473
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 5 cut(s) 166, 259, 533, 735, 1473
PspN4I GGNNCC 4 cut(s) 539, 1118, 1254, 1417
PspPI GGNCC 3 cut(s) 538, 663, 1495
PstNI CAGNNNCTG 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 4 cut(s) 499, 1017, 1391, 1417
RsaNI GTAC 4 cut(s) 498, 1016, 1390, 1416
RseI CAYNNNNRTG 3 cut(s) 416, 858, 971
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 4 cut(s) 234, 357, 683, 945
SatI GCNGC 9 cut(s) 393, 478, 528, 531, 864, 982, 985, 1358, 1427
Sau3AI GATC 4 cut(s) 247, 802, 1302, 1326
Sau96I GGNCC 3 cut(s) 538, 663, 1495
ScaI AGTACT 1 cut(s) 499
SchI GAGTC 2 cut(s) 718, 1390
ScrFI CCNGG 5 cut(s) 168, 261, 535, 737, 1475
SduI GDGCHC 3 cut(s) 405, 750, 782
SexAI ACCWGGT 1 cut(s) 166
SfaNI GCATC 1 cut(s) 850
SinI GGWCC 2 cut(s) 538, 1495
SmiMI CAYNNNNRTG 3 cut(s) 416, 858, 971
SphI GCATGC 1 cut(s) 885
Sse9I AATT 7 cut(s) 77, 286, 555, 568, 633, 1284, 1348
SsiI CCGC 5 cut(s) 477, 480, 786, 795, 1429
SspMI CTAG 4 cut(s) 65, 315, 1257, 1361
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 5 cut(s) 166, 259, 533, 735, 1473
StyI CCWWGG 1 cut(s) 1269
TaaI ACNGT 3 cut(s) 775, 819, 1026
TaqI TCGA 2 cut(s) 405, 921
TasI AATT 7 cut(s) 77, 286, 555, 568, 633, 1284, 1348
TatI WGTACW 1 cut(s) 497
TauI GCSGC 1 cut(s) 480
TfiI GAWTC 5 cut(s) 26, 194, 642, 1000, 1033
Tru1I TTAA 4 cut(s) 234, 357, 683, 945
Tru9I TTAA 4 cut(s) 234, 357, 683, 945
TscAI CASTG 8 cut(s) 325, 355, 780, 822, 973, 1029, 1066, 1110
TseFI GTSAC 1 cut(s) 1061
TseI GCWGC 8 cut(s) 392, 527, 530, 863, 981, 984, 1357, 1426
Tsp45I GTSAC 1 cut(s) 1061
TspDTI ATGAA 5 cut(s) 48, 100, 372, 842, 898
TspGWI ACGGA 1 cut(s) 1295
TspRI CASTG 8 cut(s) 325, 355, 780, 822, 973, 1029, 1066, 1110
VpaK11BI GGWCC 2 cut(s) 538, 1495
XapI RAATTY 3 cut(s) 77, 568, 1284
XceI RCATGY 2 cut(s) 439, 885
XmnI GAANNNNTTC 1 cut(s) 455
XspI CTAG 4 cut(s) 65, 315, 1257, 1361
ZrmI AGTACT 1 cut(s) 499
Zsp2I ATGCAT 1 cut(s) 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.