Rh1CG066100

Tyrosine dopa decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001466
Physical Location & Seq
Forward (+)
13453571 .. 13455001
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG066100.1

Sequence Viewer

Length: 1431 bp
ATGGTCGTAGACTTCATCGCAGATTATTACCAAAACATAGAGAAATACCCAGTTCTAAGCCGAGTGCAACCTGGTTATTTGAGAAAATGCCTACCAGATTCTGCCCCATATGACCCTGAACCCATATCAACCATCCTTAAAGATGTTCAGGACCACATTGTTCCTGGCCTAACACATTGGCAAAGTCCAAATTTCTTTGCATACTTCTCTTCAACTGCTAGCACTGCTGGGTTTCTCGGTGAAATGCTCACCACTGGACTTAATGTGGTGGGGTTCAACTGGGTTTCATCACCAGCAGCAACCGAGCTCGAAAACATAGTCATGGATTGGTTGGCAGACATGCTTCAGCTTCCCAAGTCTTTCCATTTCTCTGGCAACGGAGGCGGTGTGTTACATGGGAGTACTTGTGAGGCCATTGTTTGCACAATGGCAGCTGCCAGAGACCAAATGCTACGCCGAATTGGTAGCGAGAATTTGGGAAATCTTGTTGTGTATGGTTCAGACCAAACACATAGCACACTTCAGAAAGCTTCCCAAATTCTTGGAATCAACATGGAGAACTTCCGGGCCATCAAGACTACAAAGTCAACTGAATTTGCACTATCACCTGAGATGCTAAGATTGACAATAAGTTCAGACCTAGAAGAAGGGTTAGTGCCACTCTTTGTATGTGCCACAATAGGCACAACCGCAACCACTGCTATTGATCCATTGGAGGCACTATGTCATGTAGCAAAAGAATACGGCGTGTGGGTTCATGTGGATGGTGCATATGCTGGAAGCGCATGCATTTGTCCAGAGTTTCGACATTTCATTGATGGCGTAGAGGGCGCAAACTCTTTTACTTTTAACCCCCATAAGTGGTTATTCACTGGAATGGATTGCTGCTGCCTTTGGGTTAAGAATCCGAGTGCGTTGGTACTTTCATTGTCAACGAATCCAGAGTTTTTGAGGAACACAGCCAGTAACTCAAAGCAAGTTGTGGACTACAAAGACTGGCAAATAGCACTGAGCCGGAGGTTCCGAGCATTGAGGGTATGGCTTGTGCTAAGAAGCTACGGCGTGGCCAACCTTCGAAACTTTATACGTAGCCATGTCAAAATGGCCAAGACTTTTGAAGGGCTTGTGAGAATGGACAAGAGGTTTGAGATTGTGGTGCCTAGAGACTTCTCCTTGGTCTGCTTTAGAATTTCACCATCGGCGTTGATCAGTAGGGATGAGGATGGTGAGATCGGTATGATAAACGAGGTCAACTGCAAGCTGCTAGATGCCATCAACGCATCAGGTAAAGCATACATGACCCATGCTGTGGTTGGAGGTATCTTTCTGCTGCGGTGCGCCATTGGTGCTACTCTGACAGAAGAAAAGCACATAGTCCAGGCTTGGAAGGTGGTGCAAGACCATGCACAAGCCATCCTCAATATGCATTGA

Protein Analysis

476

Amino Acids

52.78

Weight (kDa)

6.17

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 24 - 397 6e-114 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 583
AccB1I GGYRCC 1 cut(s) 1156
AccB7I CCANNNNNTGG 1 cut(s) 1309
AccI GTMKAC 1 cut(s) 9
AciI CCGC 3 cut(s) 384, 690, 1333
AclWI GGATC 1 cut(s) 701
AcoI YGGCCR 2 cut(s) 1065, 1104
AcsI RAATTY 5 cut(s) 190, 472, 537, 593, 1188
AcuI CTGAAG 2 cut(s) 329, 506
AfaI GTAC 2 cut(s) 403, 921
AfiI CCNNNNNNNGG 2 cut(s) 861, 1309
AgsI TTSAA 3 cut(s) 213, 277, 1118
AjnI CCWGG 3 cut(s) 70, 163, 1377
AluBI AGCT 6 cut(s) 307, 349, 434, 530, 1056, 1261
AluI AGCT 6 cut(s) 307, 349, 434, 530, 1056, 1261
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 2 cut(s) 435, 1158
AlwI GGATC 1 cut(s) 701
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 5 cut(s) 166, 411, 567, 1065, 1104
ApeKI GCWGC 7 cut(s) 296, 431, 434, 885, 888, 1261, 1330
ApoI RAATTY 5 cut(s) 190, 472, 537, 593, 1188
ArsI GACNNNNNNTTYG 4 cut(s) 303, 335, 1127, 1159
AspLEI GCGC 3 cut(s) 785, 833, 1340
AspS9I GGNCC 2 cut(s) 151, 567
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 6 cut(s) 241, 251, 282, 597, 1185, 1238
AsuII TTCGAA 1 cut(s) 1075
AsuNHI GCTAGC 1 cut(s) 218
AvaII GGWCC 1 cut(s) 151
BalI TGGCCA 2 cut(s) 1067, 1106
BanI GGYRCC 1 cut(s) 1156
BanII GRGCYC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 7 cut(s) 308, 421, 443, 872, 875, 1248, 1317
BccI CCATC 8 cut(s) 140, 578, 758, 812, 1204, 1217, 1280, 1421
BceAI ACGGC 2 cut(s) 760, 1075
BciT130I CCWGG 3 cut(s) 72, 165, 1379
BclI TGATCA 1 cut(s) 1206
BcnI CCSGG 1 cut(s) 566
BcoDI GTCTC 2 cut(s) 435, 1158
BfaI CTAG 4 cut(s) 219, 641, 1161, 1265
BisI GCNGC 7 cut(s) 297, 432, 435, 886, 889, 1262, 1331
BlsI GCNGC 7 cut(s) 298, 433, 436, 887, 890, 1263, 1332
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 4 cut(s) 72, 165, 566, 1379
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 151, 567
BmiI GGNNCC 2 cut(s) 1022, 1158
BmrFI CCNGG 4 cut(s) 72, 165, 566, 1379
BmrI ACTGGG 2 cut(s) 44, 289
BmsI GCATC 3 cut(s) 603, 1258, 1289
BmtI GCTAGC 1 cut(s) 222
BmuI ACTGGG 2 cut(s) 44, 289
Bpu14I TTCGAA 1 cut(s) 1075
BpuMI CCSGG 1 cut(s) 566
BsaAI YACGTR 1 cut(s) 1088
BsaI GGTCTC 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 1173
BsaXI ACNNNNNCTCC 4 cut(s) 372, 391, 402, 421
Bsc4I CCNNNNNNNGG 2 cut(s) 861, 1309
Bse1I ACTGG 6 cut(s) 50, 259, 284, 877, 963, 1001
BseBI CCWGG 3 cut(s) 72, 165, 1379
BseDI CCNNGG 1 cut(s) 1173
BseGI GGATG 5 cut(s) 132, 769, 1222, 1228, 1413
BseLI CCNNNNNNNGG 2 cut(s) 861, 1309
BseMII CTCAG 2 cut(s) 600, 1001
BseNI ACTGG 6 cut(s) 50, 259, 284, 877, 963, 1001
BseXI GCAGC 7 cut(s) 308, 421, 443, 872, 875, 1248, 1317
BseYI CCCAGC 1 cut(s) 227
BshFI GGCC 5 cut(s) 168, 413, 569, 1067, 1106
BshNI GGYRCC 1 cut(s) 1156
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 2 cut(s) 565, 1015
BslI CCNNNNNNNGG 2 cut(s) 861, 1309
BsmAI GTCTC 2 cut(s) 435, 1158
BsnI GGCC 5 cut(s) 168, 413, 569, 1067, 1106
Bso31I GGTCTC 1 cut(s) 435
Bsp119I TTCGAA 1 cut(s) 1075
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 3 cut(s) 706, 1206, 1230
BspACI CCGC 3 cut(s) 384, 690, 1333
BspANI GGCC 5 cut(s) 168, 413, 569, 1067, 1106
BspCNI CTCAG 2 cut(s) 601, 1002
BspLI GGNNCC 2 cut(s) 1022, 1158
BspOI GCTAGC 1 cut(s) 222
BspPI GGATC 1 cut(s) 701
BspT104I TTCGAA 1 cut(s) 1075
BspT107I GGYRCC 1 cut(s) 1156
BspTNI GGTCTC 1 cut(s) 435
BsrI ACTGG 6 cut(s) 50, 259, 284, 877, 963, 1001
BssECI CCNNGG 1 cut(s) 1173
BssMI GATC 3 cut(s) 706, 1206, 1230
BssT1I CCWWGG 1 cut(s) 1173
Bst2UI CCWGG 3 cut(s) 72, 165, 1379
Bst6I CTCTTC 1 cut(s) 214
BstAPI GCANNNNNTGC 1 cut(s) 698
BstBAI YACGTR 1 cut(s) 1088
BstBI TTCGAA 1 cut(s) 1075
BstC8I GCNNGC 3 cut(s) 220, 787, 1259
BstDEI CTNAG 5 cut(s) 56, 609, 617, 1010, 1049
BstF5I GGATG 5 cut(s) 132, 769, 1222, 1228, 1413
BstHHI GCGC 3 cut(s) 785, 833, 1340
BstKTI GATC 3 cut(s) 709, 1209, 1233
BstMAI GTCTC 2 cut(s) 435, 1158
BstMBI GATC 3 cut(s) 706, 1206, 1230
BstMWI GCNNNNNNNGC 7 cut(s) 224, 381, 698, 782, 828, 1277, 1346
BstNI CCWGG 3 cut(s) 72, 165, 1379
BstNSI RCATGY 2 cut(s) 343, 789
BstSCI CCNGG 4 cut(s) 70, 163, 564, 1377
BstSNI TACGTA 1 cut(s) 1088
BstV1I GCAGC 7 cut(s) 308, 421, 443, 872, 875, 1248, 1317
BstXI CCANNNNNNTGG 2 cut(s) 371, 542
BsuRI GGCC 5 cut(s) 168, 413, 569, 1067, 1106
BtsCI GGATG 5 cut(s) 132, 769, 1222, 1228, 1413
BtsI GCAGTG 2 cut(s) 222, 696
BtsIMutI CAGTG 5 cut(s) 222, 252, 696, 870, 1007
Cac8I GCNNGC 3 cut(s) 220, 787, 1259
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 3 cut(s) 785, 833, 1340
Cfr13I GGNCC 2 cut(s) 151, 567
CsiI ACCWGGT 1 cut(s) 70
Csp6I GTAC 2 cut(s) 402, 920
CspCI CAANNNNNGTGG 2 cut(s) 685, 720
CviQI GTAC 2 cut(s) 402, 920
DdeI CTNAG 5 cut(s) 56, 609, 617, 1010, 1049
DpnI GATC 3 cut(s) 708, 1208, 1232
DpnII GATC 3 cut(s) 706, 1206, 1230
DrdI GACNNNNNNGTC 1 cut(s) 583
DseDI GACNNNNNNGTC 1 cut(s) 583
EaeI YGGCCR 2 cut(s) 1065, 1104
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Ecl136II GAGCTC 1 cut(s) 307
Eco105I TACGTA 1 cut(s) 1088
Eco130I CCWWGG 1 cut(s) 1173
Eco24I GRGCYC 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 2 cut(s) 329, 506
EcoICRI GAGCTC 1 cut(s) 307
EcoRII CCWGG 3 cut(s) 70, 163, 1377
EcoT14I CCWWGG 1 cut(s) 1173
EcoT22I ATGCAT 2 cut(s) 791, 1428
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 1173
FauNDI CATATG 2 cut(s) 109, 772
FbaI TGATCA 1 cut(s) 1206
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 7 cut(s) 297, 432, 435, 886, 889, 1262, 1331
FokI GGATG 5 cut(s) 119, 776, 1229, 1235, 1400
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 7 cut(s) 297, 432, 435, 886, 889, 1262, 1331
FspBI CTAG 4 cut(s) 219, 641, 1161, 1265
GlaI GCGC 3 cut(s) 784, 832, 1339
GluI GCNGC 7 cut(s) 297, 432, 435, 886, 889, 1262, 1331
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 5 cut(s) 168, 413, 569, 1067, 1106
HapII CCGG 2 cut(s) 565, 1015
HhaI GCGC 3 cut(s) 785, 833, 1340
Hin6I GCGC 3 cut(s) 783, 831, 1338
HinP1I GCGC 3 cut(s) 783, 831, 1338
HincII GTYRAC 3 cut(s) 588, 933, 1252
HindII GTYRAC 3 cut(s) 588, 933, 1252
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 4 cut(s) 98, 546, 904, 937
HpaII CCGG 2 cut(s) 565, 1015
HphI GGTGA 6 cut(s) 241, 251, 282, 597, 1185, 1238
Hpy166II GTNNAC 5 cut(s) 10, 588, 933, 985, 1252
Hpy188I TCNGA 6 cut(s) 502, 525, 637, 909, 1025, 1356
Hpy188III TCNNGA 4 cut(s) 149, 574, 797, 941
Hpy8I GTNNAC 5 cut(s) 10, 588, 933, 985, 1252
HpyAV CCTTC 4 cut(s) 641, 1082, 1112, 1381
HpyCH4IV ACGT 1 cut(s) 1087
HpyF10VI GCNNNNNNNGC 7 cut(s) 224, 381, 698, 782, 828, 1277, 1346
HpyF3I CTNAG 5 cut(s) 56, 609, 617, 1010, 1049
HpySE526I ACGT 1 cut(s) 1087
HspAI GCGC 3 cut(s) 783, 831, 1338
Ksp22I TGATCA 1 cut(s) 1206
Kzo9I GATC 3 cut(s) 706, 1206, 1230
Lsp1109I GCAGC 7 cut(s) 308, 421, 443, 872, 875, 1248, 1317
LweI GCATC 3 cut(s) 603, 1258, 1289
MabI ACCWGGT 1 cut(s) 70
MaeI CTAG 4 cut(s) 219, 641, 1161, 1265
MaeII ACGT 1 cut(s) 1087
MaeIII GTNAC 2 cut(s) 390, 965
MalI GATC 3 cut(s) 708, 1208, 1232
MboI GATC 3 cut(s) 706, 1206, 1230
MboII GAAGA 3 cut(s) 201, 656, 1373
MhlI GDGCHC 1 cut(s) 309
MlsI TGGCCA 2 cut(s) 1067, 1106
MluCI AATT 6 cut(s) 190, 459, 472, 537, 593, 1188
MluNI TGGCCA 2 cut(s) 1067, 1106
MmeI TCCRAC 1 cut(s) 1294
Mox20I TGGCCA 2 cut(s) 1067, 1106
Mph1103I ATGCAT 2 cut(s) 791, 1428
MscI TGGCCA 2 cut(s) 1067, 1106
MseI TTAA 4 cut(s) 138, 261, 849, 900
MslI CAYNNNNRTG 3 cut(s) 320, 762, 875
Msp20I TGGCCA 2 cut(s) 1067, 1106
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 2 cut(s) 565, 1015
MspR9I CCNGG 4 cut(s) 72, 165, 566, 1379
MvaI CCWGG 3 cut(s) 72, 165, 1379
MwoI GCNNNNNNNGC 7 cut(s) 224, 381, 698, 782, 828, 1277, 1346
NciI CCSGG 1 cut(s) 566
NdeI CATATG 2 cut(s) 109, 772
NdeII GATC 3 cut(s) 706, 1206, 1230
NheI GCTAGC 1 cut(s) 218
NlaIV GGNNCC 2 cut(s) 1022, 1158
NmeAIII GCCGAG 1 cut(s) 86
NsiI ATGCAT 2 cut(s) 791, 1428
NspI RCATGY 2 cut(s) 343, 789
NspV TTCGAA 1 cut(s) 1075
PaeI GCATGC 1 cut(s) 789
PfeI GAWTC 4 cut(s) 98, 546, 904, 937
PflMI CCANNNNNTGG 1 cut(s) 1309
PkrI GCNGC 7 cut(s) 298, 433, 436, 887, 890, 1263, 1332
Ppu21I YACGTR 1 cut(s) 1088
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 3 cut(s) 70, 163, 1377
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 3 cut(s) 70, 163, 1377
PspN4I GGNNCC 2 cut(s) 1022, 1158
PspPI GGNCC 2 cut(s) 151, 567
PstNI CAGNNNCTG 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 403, 921
RsaNI GTAC 2 cut(s) 402, 920
RseI CAYNNNNRTG 3 cut(s) 320, 762, 875
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 4 cut(s) 138, 261, 849, 900
SatI GCNGC 7 cut(s) 297, 432, 435, 886, 889, 1262, 1331
Sau3AI GATC 3 cut(s) 706, 1206, 1230
Sau96I GGNCC 2 cut(s) 151, 567
ScaI AGTACT 1 cut(s) 403
ScrFI CCNGG 4 cut(s) 72, 165, 566, 1379
SduI GDGCHC 1 cut(s) 309
SexAI ACCWGGT 1 cut(s) 70
SfaNI GCATC 3 cut(s) 603, 1258, 1289
SfuI TTCGAA 1 cut(s) 1075
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 3 cut(s) 320, 762, 875
SnaBI TACGTA 1 cut(s) 1088
SphI GCATGC 1 cut(s) 789
Sse9I AATT 6 cut(s) 190, 459, 472, 537, 593, 1188
SsiI CCGC 3 cut(s) 384, 690, 1333
SspMI CTAG 4 cut(s) 219, 641, 1161, 1265
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 4 cut(s) 70, 163, 564, 1377
StyI CCWWGG 1 cut(s) 1173
TaiI ACGT 1 cut(s) 1090
TaqI TCGA 3 cut(s) 309, 805, 1075
TasI AATT 6 cut(s) 190, 459, 472, 537, 593, 1188
TatI WGTACW 1 cut(s) 401
TfiI GAWTC 4 cut(s) 98, 546, 904, 937
Tru1I TTAA 4 cut(s) 138, 261, 849, 900
Tru9I TTAA 4 cut(s) 138, 261, 849, 900
TscAI CASTG 5 cut(s) 229, 259, 703, 877, 1014
TseI GCWGC 7 cut(s) 296, 431, 434, 885, 888, 1261, 1330
TspDTI ATGAA 5 cut(s) 4, 276, 746, 802, 915
TspGWI ACGGA 1 cut(s) 393
TspRI CASTG 5 cut(s) 229, 259, 703, 877, 1014
Van91I CCANNNNNTGG 1 cut(s) 1309
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 5 cut(s) 190, 472, 537, 593, 1188
XceI RCATGY 2 cut(s) 343, 789
XcmI CCANNNNNNNNNTGG 2 cut(s) 161, 1310
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 4 cut(s) 219, 641, 1161, 1265
ZrmI AGTACT 1 cut(s) 403
Zsp2I ATGCAT 2 cut(s) 791, 1428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.