FvH4_3g09540

Tyrosine dopa decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001466
Physical Location & Seq
Reverse (-)
5549782 .. 5551359
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09540.t1

Sequence Viewer

Length: 1578 bp
ATGGGTAGCCTCGAGTTCCACCATGTTCCAGACAAAACCAACTCTGATCCCCCAATGGCCAACCCTATGGATCCTGAAGAGTTCAGGAGACAAGGTCACGTAATTATAGATTTCATTGCAGACTATTACAAAAACATAGAGAAGTACCTGGTTCTGAGCCAAGTCCAACCAGGTTACCTCAAGAAGCTCTTACCGGAGTCTGCGCCATACGACCCTGAGCCGATCGAAACCATCCTCCAAGATGTGCAAGATCATATTGTTCCTGGTATAACACATTGGCAAAGCCCTAGCTACTTTGCCTACTTTCCTTCAAGTGGCAGCATTGCCGGGTTTCTAGGCGAAATGCTTAGCACTGGGTTCAATGTGGTTGGATTCAACTGGATGTCATCGCCTGCTGCAACTGAGCTAGAAAGTATAGTCATGGATTGGCTTGGAGACATGCTGCATCTTCCCAAGTCCTTCCTGTTCTCTGGAAATGGTGGTGGTGTGTTACAAGGGACGACTTGTGAGGCCATTGTTTGCACCATGGCTGCTGCTAGAGACCAAATGCTAAGCCGAATTGGTAAAGACAACATTGGGAAGCTAGTTGTATACGGGTCAGATCAGACACATAGTGCGCTTAAAAAGGCCTCCCAAATTGTTGGAATCCATCCAAACAATTTCAGGGCCATCAAGACTACAAAGTCCACAGAATTTGCCTTGTCACCTGAGTTGCTGAGATCCACAATTTGTAGTGACATAGACAAAGGGCTAGTTCCTTTGTTTTTATGTGCCACGATGGGAACAACTGCAACCACTTCTGTTGATCCATTGAGGGGACTATGTGATGTAGCAAAAGATTACGACTTGTGGGTTCATGTCGATGCAGCATACGCAGGAAGTATCTGCATTTATCCAGAGTTTCGACATTTCATTGAAGGCGTCGAGGGAGCGAATTCATTCAGTTTCAATGCACATAAATGGTTCCTCACAACACTCGATTGTTGCTGCCTTTGGGTTAAGAACCCAACTGCATTGATCAATTCTTTGTCAACGAATCCGGAGTATTTGAGGAACAAAGCCAGTGATTCAAAGCAGGTGGTGGACTACAAAGACTGGCAAATAGCACTAAGCCGGAGGTTCCGGGCATTGAAATTATGGCTTGTGCTAAGAAGCTATGGCGTGGCTAACCTTAGAAGCTTTATTCGAAGCCATGTCAAGATGGCCAAGATTTTTGAAGGGCTGGTGAGAATGGACAACAGGTTTGAGATTGTGGTGCCTAGAAACTTCGCCGTGGTCTGTTTCAGGATTTCACCATCCGCAATAGTTAGTGATGATCGTTCTTATAATGGTGAGGAGTACAATATGGTAAACGAGATCAACTGCAAATTGCTGGAGGCCATCAATGCATCAGGCTCTGTGTTCATGACTCATGCTGTGGTTGGAGGTGTCTACCTCTTGCGGTGCGCAGTTGGTGCAACTCTAACAGAGGAAAAGCACATTGTCGAGGCATGGAAGGTGGTGCAAGGTCAGGCACATGCAATTCTCTCAGCATGCGTAGTTGATCTGCATAATCGTATGAGATATTCTAACATATAG

Protein Analysis

526

Amino Acids

58.48

Weight (kDa)

6.25

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 57 - 430 8.5e-116 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1326
AarI CACCTGC 1 cut(s) 1066
AasI GACNNNNNNGTC 1 cut(s) 682
Acc16I TGCGCA 1 cut(s) 1447
Acc36I ACCTGC 1 cut(s) 1066
AccB1I GGYRCC 1 cut(s) 1255
AccI GTMKAC 2 cut(s) 591, 1431
AccIII TCCGGA 1 cut(s) 1039
AciI CCGC 2 cut(s) 1299, 1441
AclWI GGATC 5 cut(s) 41, 65, 78, 714, 800
AcoI YGGCCR 2 cut(s) 57, 1203
AcsI RAATTY 2 cut(s) 692, 934
AcuI CTGAAG 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 921
AdeI CACNNNGTG 1 cut(s) 614
AfaI GTAC 2 cut(s) 146, 1340
AfiI CCNNNNNNNGG 2 cut(s) 314, 815
AgsI TTSAA 8 cut(s) 312, 361, 376, 917, 949, 1071, 1132, 1217
AjnI CCWGG 3 cut(s) 147, 169, 262
AluBI AGCT 6 cut(s) 187, 291, 406, 583, 1155, 1179
AluI AGCT 6 cut(s) 187, 291, 406, 583, 1155, 1179
Alw26I GTCTC 3 cut(s) 82, 429, 534
AlwI GGATC 5 cut(s) 41, 65, 78, 714, 800
AlwNI CAGNNNCTG 1 cut(s) 1397
Ama87I CYCGRG 1 cut(s) 11
Aor13HI TCCGGA 1 cut(s) 1039
AoxI GGCC 6 cut(s) 57, 510, 627, 666, 1203, 1377
ApeKI GCWGC 7 cut(s) 318, 395, 442, 530, 533, 866, 987
ApoI RAATTY 2 cut(s) 692, 934
ArsI GACNNNNNNTTYG 2 cut(s) 1226, 1258
Asp700I GAANNNNTTC 1 cut(s) 938
AspLEI GCGC 3 cut(s) 205, 619, 1448
AspS9I GGNCC 1 cut(s) 666
AsuC2I CCSGG 2 cut(s) 328, 1124
AsuHPI GGTGA 4 cut(s) 696, 1237, 1284, 1343
AsuII TTCGAA 1 cut(s) 1186
AvaI CYCGRG 1 cut(s) 11
BalI TGGCCA 2 cut(s) 59, 1205
BamHI GGATCC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 1255
BbvI GCAGC 7 cut(s) 330, 382, 429, 517, 520, 878, 974
BccI CCATC 7 cut(s) 239, 657, 677, 772, 1195, 1303, 1388
BceAI ACGGC 1 cut(s) 1256
BciT130I CCWGG 3 cut(s) 149, 171, 264
BclI TGATCA 1 cut(s) 1017
BcnI CCSGG 2 cut(s) 328, 1124
BcoDI GTCTC 3 cut(s) 82, 429, 534
BfaI CTAG 7 cut(s) 288, 335, 407, 537, 584, 752, 1260
BfuAI ACCTGC 1 cut(s) 1066
BisI GCNGC 7 cut(s) 319, 396, 443, 531, 534, 867, 988
BlpI GCTNAGC 2 cut(s) 347, 551
BlsI GCNGC 7 cut(s) 320, 397, 444, 532, 535, 868, 989
Bme1390I CCNGG 5 cut(s) 149, 171, 264, 328, 1124
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 666
BmiI GGNNCC 4 cut(s) 72, 965, 1121, 1257
BmrFI CCNGG 5 cut(s) 149, 171, 264, 328, 1124
BmrI ACTGGG 1 cut(s) 363
BmsI GCATC 3 cut(s) 454, 853, 1397
BmuI ACTGGG 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 1394
Bpu10I CCTNAGC 1 cut(s) 216
Bpu1102I GCTNAGC 2 cut(s) 347, 551
Bpu14I TTCGAA 1 cut(s) 1186
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 2 cut(s) 328, 1124
BsaAI YACGTR 1 cut(s) 100
BsaHI GRCGYC 1 cut(s) 921
BsaI GGTCTC 1 cut(s) 534
BsaJI CCNNGG 2 cut(s) 525, 1272
BsaWI WCCGGW 2 cut(s) 193, 1039
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 815
Bse1I ACTGG 4 cut(s) 358, 383, 1062, 1100
Bse3DI GCAATG 2 cut(s) 114, 321
BseAI TCCGGA 1 cut(s) 1039
BseBI CCWGG 3 cut(s) 149, 171, 264
BseDI CCNNGG 2 cut(s) 525, 1272
BseGI GGATG 4 cut(s) 231, 387, 649, 1295
BseLI CCNNNNNNNGG 2 cut(s) 314, 815
BseMI GCAATG 2 cut(s) 114, 321
BseMII CTCAG 6 cut(s) 146, 207, 393, 699, 707, 1542
BseNI ACTGG 4 cut(s) 358, 383, 1062, 1100
BseRI GAGGAG 1 cut(s) 1349
BseXI GCAGC 7 cut(s) 330, 382, 429, 517, 520, 878, 974
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 6 cut(s) 59, 512, 629, 668, 1205, 1379
BshNI GGYRCC 1 cut(s) 1255
BsiEI CGRYCG 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 5 cut(s) 194, 327, 1040, 1114, 1123
BslFI GGGAC 2 cut(s) 511, 831
BslI CCNNNNNNNGG 2 cut(s) 314, 815
BsmAI GTCTC 3 cut(s) 82, 429, 534
BsmFI GGGAC 2 cut(s) 511, 831
BsnI GGCC 6 cut(s) 59, 512, 629, 668, 1205, 1379
Bso31I GGTCTC 1 cut(s) 534
BsoBI CYCGRG 1 cut(s) 11
Bsp119I TTCGAA 1 cut(s) 1186
Bsp13I TCCGGA 1 cut(s) 1039
Bsp1720I GCTNAGC 2 cut(s) 347, 551
Bsp19I CCATGG 1 cut(s) 525
BspACI CCGC 2 cut(s) 1299, 1441
BspANI GGCC 6 cut(s) 59, 512, 629, 668, 1205, 1379
BspCNI CTCAG 6 cut(s) 147, 208, 394, 700, 708, 1541
BspEI TCCGGA 1 cut(s) 1039
BspHI TCATGA 1 cut(s) 1404
BspLI GGNNCC 4 cut(s) 72, 965, 1121, 1257
BspMI ACCTGC 1 cut(s) 1066
BspPI GGATC 5 cut(s) 41, 65, 78, 714, 800
BspT104I TTCGAA 1 cut(s) 1186
BspT107I GGYRCC 1 cut(s) 1255
BspTNI GGTCTC 1 cut(s) 534
BsrDI GCAATG 2 cut(s) 114, 321
BsrI ACTGG 4 cut(s) 358, 383, 1062, 1100
BssECI CCNNGG 2 cut(s) 525, 1272
BssNAI GTATAC 1 cut(s) 592
BssNI GRCGYC 1 cut(s) 921
BssT1I CCWWGG 1 cut(s) 525
Bst1107I GTATAC 1 cut(s) 592
Bst2UI CCWGG 3 cut(s) 149, 171, 264
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 921
BstAPI GCANNNNNTGC 1 cut(s) 1454
BstBAI YACGTR 1 cut(s) 100
BstBI TTCGAA 1 cut(s) 1186
BstC8I GCNNGC 2 cut(s) 393, 1534
BstDSI CCRYGG 2 cut(s) 525, 1272
BstEII GGTNACC 1 cut(s) 173
BstF5I GGATG 4 cut(s) 231, 387, 649, 1295
BstHHI GCGC 3 cut(s) 205, 619, 1448
BstMAI GTCTC 3 cut(s) 82, 429, 534
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 3 cut(s) 872, 1385, 1454
BstNI CCWGG 3 cut(s) 149, 171, 264
BstNSI RCATGY 3 cut(s) 442, 1520, 1536
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 5 cut(s) 147, 169, 262, 326, 1122
BstV1I GCAGC 7 cut(s) 330, 382, 429, 517, 520, 878, 974
BstX2I RGATCY 2 cut(s) 70, 719
BstXI CCANNNNNNTGG 2 cut(s) 67, 641
BstYI RGATCY 2 cut(s) 70, 719
BstZ17I GTATAC 1 cut(s) 592
BsuRI GGCC 6 cut(s) 59, 512, 629, 668, 1205, 1379
BtgI CCRYGG 2 cut(s) 525, 1272
BtgZI GCGATG 1 cut(s) 372
BtsCI GGATG 4 cut(s) 231, 387, 649, 1295
BtsIMutI CAGTG 2 cut(s) 351, 1069
BveI ACCTGC 1 cut(s) 1066
Cac8I GCNNGC 2 cut(s) 393, 1534
CaiI CAGNNNCTG 1 cut(s) 1397
CciI TCATGA 1 cut(s) 1404
CfoI GCGC 3 cut(s) 205, 619, 1448
Cfr13I GGNCC 1 cut(s) 666
CseI GACGC 1 cut(s) 910
CsiI ACCWGGT 2 cut(s) 147, 169
Csp6I GTAC 2 cut(s) 145, 1339
CspCI CAANNNNNGTGG 6 cut(s) 676, 711, 784, 819, 1059, 1094
CviQI GTAC 2 cut(s) 145, 1339
DraIII CACNNNGTG 1 cut(s) 614
DrdI GACNNNNNNGTC 1 cut(s) 682
DseDI GACNNNNNNGTC 1 cut(s) 682
EaeI YGGCCR 2 cut(s) 57, 1203
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 525
Eco147I AGGCCT 1 cut(s) 629
Eco31I GGTCTC 1 cut(s) 534
Eco57I CTGAAG 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 11
Eco91I GGTNACC 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 934
EcoRII CCWGG 3 cut(s) 147, 169, 262
EcoT14I CCWWGG 1 cut(s) 525
EcoT22I ATGCAT 1 cut(s) 1390
ErhI CCWWGG 1 cut(s) 525
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FaqI GGGAC 2 cut(s) 511, 831
FbaI TGATCA 1 cut(s) 1017
FblI GTMKAC 2 cut(s) 591, 1431
Fnu4HI GCNGC 7 cut(s) 319, 396, 443, 531, 534, 867, 988
FokI GGATG 4 cut(s) 218, 394, 636, 1282
Fsp4HI GCNGC 7 cut(s) 319, 396, 443, 531, 534, 867, 988
FspBI CTAG 7 cut(s) 288, 335, 407, 537, 584, 752, 1260
FspI TGCGCA 1 cut(s) 1447
GlaI GCGC 3 cut(s) 204, 618, 1447
GluI GCNGC 7 cut(s) 319, 396, 443, 531, 534, 867, 988
GsuI CTGGAG 1 cut(s) 1394
HaeIII GGCC 6 cut(s) 59, 512, 629, 668, 1205, 1379
HapII CCGG 5 cut(s) 194, 327, 1040, 1114, 1123
HgaI GACGC 1 cut(s) 910
HhaI GCGC 3 cut(s) 205, 619, 1448
Hin1I GRCGYC 1 cut(s) 921
Hin6I GCGC 3 cut(s) 203, 617, 1446
HinP1I GCGC 3 cut(s) 203, 617, 1446
HincII GTYRAC 1 cut(s) 1032
HindII GTYRAC 1 cut(s) 1032
HindIII AAGCTT 1 cut(s) 1177
HinfI GANTC 6 cut(s) 197, 372, 645, 1036, 1067, 1408
HpaII CCGG 5 cut(s) 194, 327, 1040, 1114, 1123
HphI GGTGA 4 cut(s) 696, 1237, 1284, 1343
Hpy166II GTNNAC 6 cut(s) 592, 687, 1032, 1084, 1351, 1432
Hpy188I TCNGA 4 cut(s) 46, 156, 601, 606
Hpy8I GTNNAC 6 cut(s) 592, 687, 1032, 1084, 1351, 1432
Hpy99I CGWCG 1 cut(s) 926
HpyAV CCTTC 5 cut(s) 318, 469, 911, 1211, 1489
HpyCH4IV ACGT 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 3 cut(s) 872, 1385, 1454
HpySE526I ACGT 1 cut(s) 99
Hsp92I GRCGYC 1 cut(s) 921
HspAI GCGC 3 cut(s) 203, 617, 1446
Kpn2I TCCGGA 1 cut(s) 1039
Ksp22I TGATCA 1 cut(s) 1017
LmnI GCTCC 1 cut(s) 929
Lsp1109I GCAGC 7 cut(s) 330, 382, 429, 517, 520, 878, 974
LweI GCATC 3 cut(s) 454, 853, 1397
MabI ACCWGGT 2 cut(s) 147, 169
MaeI CTAG 7 cut(s) 288, 335, 407, 537, 584, 752, 1260
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 5 cut(s) 95, 173, 489, 702, 734
MboII GAAGA 2 cut(s) 89, 440
MflI RGATCY 2 cut(s) 70, 719
MlsI TGGCCA 2 cut(s) 59, 1205
MluNI TGGCCA 2 cut(s) 59, 1205
MlyI GAGTC 2 cut(s) 206, 1402
MmeI TCCRAC 4 cut(s) 190, 349, 622, 1402
Mox20I TGGCCA 2 cut(s) 59, 1205
Mph1103I ATGCAT 1 cut(s) 1390
MroI TCCGGA 1 cut(s) 1039
MroXI GAANNNNTTC 1 cut(s) 938
MscI TGGCCA 2 cut(s) 59, 1205
MseI TTAA 2 cut(s) 621, 999
MslI CAYNNNNRTG 2 cut(s) 861, 958
Msp20I TGGCCA 2 cut(s) 59, 1205
MspI CCGG 5 cut(s) 194, 327, 1040, 1114, 1123
MspR9I CCNGG 5 cut(s) 149, 171, 264, 328, 1124
MvaI CCWGG 3 cut(s) 149, 171, 264
MwoI GCNNNNNNNGC 3 cut(s) 872, 1385, 1454
NciI CCSGG 2 cut(s) 328, 1124
NcoI CCATGG 1 cut(s) 525
NlaIV GGNNCC 4 cut(s) 72, 965, 1121, 1257
NmuCI GTSAC 3 cut(s) 95, 702, 734
NsbI TGCGCA 1 cut(s) 1447
NsiI ATGCAT 1 cut(s) 1390
NspI RCATGY 3 cut(s) 442, 1520, 1536
NspV TTCGAA 1 cut(s) 1186
PaeI GCATGC 1 cut(s) 1536
PaeR7I CTCGAG 1 cut(s) 11
PagI TCATGA 1 cut(s) 1404
PaqCI CACCTGC 1 cut(s) 1066
PceI AGGCCT 1 cut(s) 629
PdmI GAANNNNTTC 1 cut(s) 938
PfeI GAWTC 4 cut(s) 372, 645, 1036, 1067
PflFI GACNNNGTC 1 cut(s) 93
PkrI GCNGC 7 cut(s) 320, 397, 444, 532, 535, 868, 989
Ple19I CGATCG 1 cut(s) 225
PleI GAGTC 2 cut(s) 205, 1402
PpsI GAGTC 2 cut(s) 205, 1402
Ppu21I YACGTR 1 cut(s) 100
PsiI TTATAA 1 cut(s) 1326
Psp6I CCWGG 3 cut(s) 147, 169, 262
PspEI GGTNACC 1 cut(s) 173
PspGI CCWGG 3 cut(s) 147, 169, 262
PspN4I GGNNCC 4 cut(s) 72, 965, 1121, 1257
PspPI GGNCC 1 cut(s) 666
PspXI VCTCGAGB 1 cut(s) 11
PstNI CAGNNNCTG 1 cut(s) 1397
PsuI RGATCY 2 cut(s) 70, 719
PsyI GACNNNGTC 1 cut(s) 93
PvuI CGATCG 1 cut(s) 225
RsaI GTAC 2 cut(s) 146, 1340
RsaNI GTAC 2 cut(s) 145, 1339
RseI CAYNNNNRTG 2 cut(s) 861, 958
SaqAI TTAA 2 cut(s) 621, 999
SatI GCNGC 7 cut(s) 319, 396, 443, 531, 534, 867, 988
Sau96I GGNCC 1 cut(s) 666
SchI GAGTC 2 cut(s) 206, 1402
ScrFI CCNGG 5 cut(s) 149, 171, 264, 328, 1124
SexAI ACCWGGT 2 cut(s) 147, 169
SfaNI GCATC 3 cut(s) 454, 853, 1397
Sfr274I CTCGAG 1 cut(s) 11
SfuI TTCGAA 1 cut(s) 1186
SlaI CTCGAG 1 cut(s) 11
SmiMI CAYNNNNRTG 2 cut(s) 861, 958
SmlI CTYRAG 2 cut(s) 11, 179
SmoI CTYRAG 2 cut(s) 11, 179
SphI GCATGC 1 cut(s) 1536
SseBI AGGCCT 1 cut(s) 629
SsiI CCGC 2 cut(s) 1299, 1441
SspMI CTAG 7 cut(s) 288, 335, 407, 537, 584, 752, 1260
StuI AGGCCT 1 cut(s) 629
StyD4I CCNGG 5 cut(s) 147, 169, 262, 326, 1122
StyI CCWWGG 1 cut(s) 525
TaiI ACGT 1 cut(s) 102
TaqI TCGA 8 cut(s) 12, 225, 861, 904, 924, 978, 1186, 1485
TatI WGTACW 1 cut(s) 1338
TfiI GAWTC 4 cut(s) 372, 645, 1036, 1067
Tru1I TTAA 2 cut(s) 621, 999
Tru9I TTAA 2 cut(s) 621, 999
TscAI CASTG 2 cut(s) 358, 1069
TseFI GTSAC 3 cut(s) 95, 702, 734
TseI GCWGC 7 cut(s) 318, 395, 442, 530, 533, 866, 987
Tsp45I GTSAC 3 cut(s) 95, 702, 734
TspDTI ATGAA 5 cut(s) 103, 845, 901, 927, 1393
TspRI CASTG 2 cut(s) 358, 1069
Tth111I GACNNNGTC 1 cut(s) 93
XapI RAATTY 2 cut(s) 692, 934
XceI RCATGY 3 cut(s) 442, 1520, 1536
XhoI CTCGAG 1 cut(s) 11
XmiI GTMKAC 2 cut(s) 591, 1431
XmnI GAANNNNTTC 1 cut(s) 938
XspI CTAG 7 cut(s) 288, 335, 407, 537, 584, 752, 1260
Zsp2I ATGCAT 1 cut(s) 1390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.