Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041940.1

Orthogroup ID

OG0001466

Physical Location & Seq

Genomic Coordinates Forward (+)

138 .. 911

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041940.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgggcacaaccgcaaccactgctatcgatccattgggggcagtgtgcaatgtagccaaagattatggcatgtgggttcatgtggatgctgcatatgcaggaagtgcttgcatttgtccggagtttcgtcatttcattgatggcgttgagggtgcaaactcatttagtttcaacccgcataaatggttatttactgcaatggactgttgctgcctttgggttaagaacccaagtgcattaataaattcactgtcgacgaatccagagtatttgaggaacaaagccagtgatacaaagcaagttgtggactacaaaaactggcaaatagcactaagccggaggttccgggcattgaagctatggcttgtgctaagaagctacggcgtggctaaccttagaaaatttattcgaagccaagtcaaaatggccaagatttttgaagggcttgtgagaatggacaataggtttgaaattgtggttcctagaaacttctccttggtctgtttcaggatttcactatccgcaatagttagtgatgatcattatgatggtgaggagtacaatatggtaaacgagatcaattgcaagttgctggaggccatcaatgcatcaggctctgtgttcatgacacatgctgtggttggaggtgtctacgtgctacggtgcgcagttggtgcaactctaactgaggaaaagcacattcgagaggcctggaaggcggtgcaaggccaggcacatacaattctctcagcatgtattgttgactctgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 ko00380 ko00901 ko00950 ko00965 ko01100 ko01110 ko04726 ko04728 ko05030 ko05031 ko05034 map00350 map00360 map00380 map00901 map00950 map00965 map01100 map01110 map04726 map04728 map05030 map05031 map05034

Pfam Domains

Protein Families

Pyridoxal_deC

Protein Analysis

257

Amino Acids

28.67

Weight (kDa)

8.3

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09470 FvH4_3g09472 FvH4_3g09540
malus_domestica	MD01G1040200.v1.1 MD10G1256600.v1.1 MD10G1256900.v1.1
prunus_persica	Prupe.4G087100_v2.0.a1 Prupe.6G202600_v2.0.a1
pyrus_communis	pycom01g06780 pycom10g21240
rosa_chinensis	RchiOBHm_Chr1g0324861 RchiOBHm_Chr5g0015041 RchiOBHm_Chr5g0015051 RchiOBHm_Chr6g0247151
rosa_laevigata	RLG00000030170 RLG00000032163 RLG00000032164 RLG00000032165
rosa_multiflora	Rmu_sc0004577.1_g000016 Rmu_sc0004889.1_g000027 Rmu_sc0009777.1_g000012 Rmu_sc0011258.1_g000012 Rmu_sc0041940.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061480 Rroxscaffold_1G00061490 Rroxscaffold_4G00325150 Rroxscaffold_7G00214310
rosa_rugosa	Rorug01G0048400 Rorug05G0023300 Rorug05G0023600.1 Rorug05G0523300
rosa_samantha	Rh1AG064600 Rh1BG053500 Rh1CG066100 Rh1CG066300 Rh1DG070800 Rh1DG070900 Rh5AG118300 Rh5BG115600 Rh5BG115700 Rh5BG115900 Rh5BG116200 Rh5CG126900 Rh5CG127100 Rh5DG115000 Rh5DG115100 Rh6AG038000 Rh6BG032900
rosa_wichuraiana	Rw1G005430 Rw5G010200 Rw5G010220 Rw6G003240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	667
AccI	GTMKAC	2 cut(s)	254, 651
AccIII	TCCGGA	1 cut(s)	118
AciI	CCGC	4 cut(s)	12, 176, 522, 719
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	2 cut(s)	244, 401
AfaI	GTAC	1 cut(s)	560
AgsI	TTSAA	4 cut(s)	172, 355, 440, 470
AjnI	CCWGG	2 cut(s)	710, 729
AluBI	AGCT	2 cut(s)	358, 378
AluI	AGCT	2 cut(s)	358, 378
AlwI	GGATC	1 cut(s)	23
AlwNI	CAGNNNCTG	1 cut(s)	617
Aor13HI	TCCGGA	1 cut(s)	118
AoxI	GGCC	4 cut(s)	426, 597, 708, 727
ApeKI	GCWGC	2 cut(s)	89, 210
ApoI	RAATTY	2 cut(s)	244, 401
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AseI	ATTAAT	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	668
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	563
AsuII	TTCGAA	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	428
BbvI	GCAGC	2 cut(s)	76, 197
BccI	CCATC	3 cut(s)	134, 542, 608
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	2 cut(s)	712, 731
BclI	TGATCA	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	347
BfaI	CTAG	1 cut(s)	483
BglI	GCCNNNNNGGC	1 cut(s)	716
BisI	GCNGC	2 cut(s)	90, 211
BlsI	GCNGC	2 cut(s)	91, 212
Bme1390I	CCNGG	3 cut(s)	347, 712, 731
BmiI	GGNNCC	2 cut(s)	344, 480
BmrFI	CCNGG	3 cut(s)	347, 712, 731
BmsI	GCATC	2 cut(s)	76, 617
BpmI	CTGGAG	1 cut(s)	614
Bpu14I	TTCGAA	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	347
Bsa29I	ATCGAT	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	655
BsaJI	CCNNGG	1 cut(s)	495
BsaWI	WCCGGW	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	285, 323
Bse3DI	GCAATG	2 cut(s)	55, 204
BseAI	TCCGGA	1 cut(s)	118
BseBI	CCWGG	2 cut(s)	712, 731
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	1 cut(s)	91
BseMI	GCAATG	2 cut(s)	55, 204
BseMII	CTCAG	2 cut(s)	678, 762
BseNI	ACTGG	2 cut(s)	285, 323
BseRI	GAGGAG	1 cut(s)	569
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	76, 197
BshFI	GGCC	4 cut(s)	428, 599, 710, 729
BshVI	ATCGAT	1 cut(s)	27
BsiSI	CCGG	3 cut(s)	119, 337, 346
BsnI	GGCC	4 cut(s)	428, 599, 710, 729
Bsp119I	TTCGAA	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	118
Bsp143I	GATC	3 cut(s)	28, 538, 576
BspACI	CCGC	4 cut(s)	12, 176, 522, 719
BspANI	GGCC	4 cut(s)	428, 599, 710, 729
BspCNI	CTCAG	2 cut(s)	679, 761
BspDI	ATCGAT	1 cut(s)	27
BspEI	TCCGGA	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	624
BspLI	GGNNCC	2 cut(s)	344, 480
BspPI	GGATC	1 cut(s)	23
BspT104I	TTCGAA	1 cut(s)	409
BsrDI	GCAATG	2 cut(s)	55, 204
BsrI	ACTGG	2 cut(s)	285, 323
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	3 cut(s)	28, 538, 576
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	712, 731
Bst4CI	ACNGT	3 cut(s)	206, 252, 663
BstAPI	GCANNNNNTGC	3 cut(s)	20, 104, 674
BstBAI	YACGTR	1 cut(s)	655
BstBI	TTCGAA	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	5 cut(s)	332, 371, 395, 687, 748
BstF5I	GGATG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	3 cut(s)	31, 541, 579
BstMBI	GATC	3 cut(s)	28, 538, 576
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 95, 104, 605, 674, 716
BstNI	CCWGG	2 cut(s)	712, 731
BstNSI	RCATGY	3 cut(s)	73, 635, 756
BstSCI	CCNGG	3 cut(s)	345, 710, 729
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	76, 197
Bsu15I	ATCGAT	1 cut(s)	27
BsuRI	GGCC	4 cut(s)	428, 599, 710, 729
BsuTUI	ATCGAT	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	2 cut(s)	18, 48
BtsIMutI	CAGTG	4 cut(s)	18, 48, 248, 292
Cac8I	GCNNGC	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	617
CciI	TCATGA	1 cut(s)	624
CfoI	GCGC	1 cut(s)	668
ClaI	ATCGAT	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	5 cut(s)	70, 80, 625, 632, 753
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	5 cut(s)	332, 371, 395, 687, 748
DpnI	GATC	3 cut(s)	30, 540, 578
DpnII	GATC	3 cut(s)	28, 538, 576
EaeI	YGGCCR	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	710
EcoRII	CCWGG	2 cut(s)	710, 729
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	5 cut(s)	73, 83, 628, 635, 756
FatI	CATG	5 cut(s)	69, 79, 624, 631, 752
FauI	CCCGC	1 cut(s)	183
FauNDI	CATATG	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	538
FblI	GTMKAC	2 cut(s)	254, 651
Fnu4HI	GCNGC	2 cut(s)	90, 211
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	90, 211
FspBI	CTAG	1 cut(s)	483
FspI	TGCGCA	1 cut(s)	667
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	2 cut(s)	90, 211
GsuI	CTGGAG	1 cut(s)	614
HaeIII	GGCC	4 cut(s)	428, 599, 710, 729
HapII	CCGG	3 cut(s)	119, 337, 346
HhaI	GCGC	1 cut(s)	668
Hin1II	CATG	5 cut(s)	73, 83, 628, 635, 756
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HincII	GTYRAC	2 cut(s)	255, 763
HindII	GTYRAC	2 cut(s)	255, 763
HinfI	GANTC	2 cut(s)	259, 764
HpaII	CCGG	3 cut(s)	119, 337, 346
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	5 cut(s)	255, 307, 571, 652, 763
Hpy188III	TCNNGA	5 cut(s)	119, 263, 508, 625, 704
Hpy8I	GTNNAC	5 cut(s)	255, 307, 571, 652, 763
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	2 cut(s)	434, 709
HpyCH4III	ACNGT	3 cut(s)	206, 252, 663
HpyCH4IV	ACGT	1 cut(s)	654
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 95, 104, 605, 674, 716
HpyF3I	CTNAG	5 cut(s)	332, 371, 395, 687, 748
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	5 cut(s)	73, 83, 628, 635, 756
HspAI	GCGC	1 cut(s)	666
Kpn2I	TCCGGA	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	28, 538, 576
Lsp1109I	GCAGC	2 cut(s)	76, 197
LweI	GCATC	2 cut(s)	76, 617
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	1 cut(s)	654
MalI	GATC	3 cut(s)	30, 540, 578
MboI	GATC	3 cut(s)	28, 538, 576
MfeI	CAATTG	1 cut(s)	580
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	5 cut(s)	244, 401, 471, 580, 741
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	758
MmeI	TCCRAC	1 cut(s)	622
MnlI	CCTC	8 cut(s)	142, 267, 333, 547, 589, 638, 682, 700
Mox20I	TGGCCA	1 cut(s)	428
Mph1103I	ATGCAT	1 cut(s)	610
MroI	TCCGGA	1 cut(s)	118
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	2 cut(s)	222, 239
MslI	CAYNNNNRTG	2 cut(s)	84, 546
Msp20I	TGGCCA	1 cut(s)	428
MspI	CCGG	3 cut(s)	119, 337, 346
MspR9I	CCNGG	3 cut(s)	347, 712, 731
MunI	CAATTG	1 cut(s)	580
MvaI	CCWGG	2 cut(s)	712, 731
MwoI	GCNNNNNNNGC	6 cut(s)	20, 95, 104, 605, 674, 716
NciI	CCSGG	1 cut(s)	347
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	3 cut(s)	28, 538, 576
NlaIII	CATG	5 cut(s)	73, 83, 628, 635, 756
NlaIV	GGNNCC	2 cut(s)	344, 480
NsbI	TGCGCA	1 cut(s)	667
NsiI	ATGCAT	1 cut(s)	610
NspI	RCATGY	3 cut(s)	73, 635, 756
NspV	TTCGAA	1 cut(s)	409
PagI	TCATGA	1 cut(s)	624
PceI	AGGCCT	1 cut(s)	710
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	91, 212
PleI	GAGTC	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	758
Ppu21I	YACGTR	1 cut(s)	655
PshBI	ATTAAT	1 cut(s)	239
Psp6I	CCWGG	2 cut(s)	710, 729
PspGI	CCWGG	2 cut(s)	710, 729
PspN4I	GGNNCC	2 cut(s)	344, 480
PstNI	CAGNNNCTG	1 cut(s)	617
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
RseI	CAYNNNNRTG	2 cut(s)	84, 546
SalI	GTCGAC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	222, 239
SatI	GCNGC	2 cut(s)	90, 211
Sau3AI	GATC	3 cut(s)	28, 538, 576
SchI	GAGTC	1 cut(s)	758
ScrFI	CCNGG	3 cut(s)	347, 712, 731
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	344, 360, 380, 396, 467, 649, 657
SfaNI	GCATC	2 cut(s)	76, 617
SfuI	TTCGAA	1 cut(s)	409
SmiMI	CAYNNNNRTG	2 cut(s)	84, 546
Sse9I	AATT	5 cut(s)	244, 401, 471, 580, 741
SseBI	AGGCCT	1 cut(s)	710
SsiI	CCGC	4 cut(s)	12, 176, 522, 719
SspMI	CTAG	1 cut(s)	483
StuI	AGGCCT	1 cut(s)	710
StyD4I	CCNGG	3 cut(s)	345, 710, 729
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	3 cut(s)	206, 252, 663
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	4 cut(s)	27, 254, 409, 703
TasI	AATT	5 cut(s)	244, 401, 471, 580, 741
TatI	WGTACW	1 cut(s)	558
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	222, 239
Tru9I	TTAA	2 cut(s)	222, 239
TscAI	CASTG	4 cut(s)	25, 48, 255, 292
TseI	GCWGC	2 cut(s)	89, 210
TspDTI	ATGAA	3 cut(s)	68, 124, 613
TspRI	CASTG	4 cut(s)	25, 48, 255, 292
VspI	ATTAAT	1 cut(s)	239
XapI	RAATTY	2 cut(s)	244, 401
XceI	RCATGY	3 cut(s)	73, 635, 756
XmiI	GTMKAC	2 cut(s)	254, 651
XspI	CTAG	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.