RLG00000032163

Tyrosine dopa decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001466
Physical Location & Seq
Reverse (-)
11690043 .. 11692026
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032163

Sequence Viewer

Length: 1593 bp
ATGGGCCATCATAGATATGTTAGCACTTTAGGATATATTGACAGTTCACTCCCAATCCAAATGGGTAGCCTCGAGTTCCACCATGGTCCAAAAGAAAACAACTCTGATCCCCCCATGGCCAACCCTCTGGATCCTGAAGAATTCAGGAGGCAAGGCCACATAATGATAGATTTTATTGCAGACTATTACAAGAACATAGAGAAGTACCCTGTTCTAAGCCAAGTTCAACCAGGTTATCTTAAAAAGCACTTGCCGGAGTCTGCACCATACAACCCTGAGCCGATTGATACCATCCTCCAAGATGTGCGAGATCATATTGTTCCTGGTATAACACATTGGCAAAGCCCTAGCTACTTTGCCTACTTTCCTTCAAGTGGTAGCATCGCAGGGTTTCTCGGCGAAATGCTTAGCACTGGATTCAATGTGGTTGGATTCAACTGGATGTCATCGCCTGCTGCAACTGAGCTGGAAAGCATAGTCATGGATTGGCTTGGAGACATGCTTCAACTTCCCAAGTCTTTCCTTTTCTCTGGCAAAGGTGGTGGTGTGTTACAAGGGACTACTTGTGAGGCCATTGTTTGCACCATGGCTGCTGCTAGAGACCAGATGCTAAGCCGTATTTGTAAAGACAACATTGGGAGGCTAGTTGTATATGGGTCAGATCAAACACATAGTGCACTTAAAAAAGCCTCCCAAATTGTTGGAATCCATCCAGACAATTTCAGGGCCATCAACACTGCACAATCCACCGAATTTGCACTATCACCTGAGTTGCTGAGATTGACAATTTGTTCTGACATAGAAAAAGGGTTAGTTCCTTTGTTTCTATGTGCCACGATGGGAACAACTGCAACCACTTCTGTTGATCCATTAGGGGCACTATGTGATGTAGCAAAAGCTTATGGCATGTGGGTTCATGTCGATGCAGCATACGCAGGAAGTGTCTGCATTTGTCCAGAGTTTAGGCATTTCATTGAAGGCGTTGAGGGAGCAAATTCATTCAGTTTCAATGCACATAAATGGTTCTTCACAACTCTAGATTGTTGCTGCCTTTGGGTTAAGAACCCCACTGCATTGATCGATTCCTTGTCAACGAATCCAGAGTTTTTAAGGAACAAAGCCAGTGATTCAAAGCAAGTGGTTGACTACAAAGACTGGCAAATAGCACTCAGCCGAAGGTTCCGTGCATTGAAATTATGGTTCGTGCTAAGAAACTATGGAGTAGCTAATCTTAGAAACTTTCTCAGAAGCCATGTGAAAATGGCTGAGATCTTTGAAAAGCTTGTGCGAGAGAACAAATGGTTTGAGGTTGTTGTGCCTAGGAAATTCGCCATGGTCTGTTTCAGGATTTCGCCATCAGCAATTAGCAAATATCCAGGTGATGATGGAAATGCTTTGATAAACGAGGTCAATTGCAAGCTACTGGAGGCGATCAATGCATCAGGTAATGTATACATGACTCATGCTGTAGTTGGAGGCATGTATGTGTTGCGATGCGCAATTGGTGCAACTCTGACCGAGGAAAAGCACATACGCATGGCCTGGAAGGTAGTGCATGACCATGCCGATGCCGTCCTGAGCACGTACCAGTAG

Protein Analysis

531

Amino Acids

59.09

Weight (kDa)

6.41

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 77 - 450 1.3e-113 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1498
AccI GTMKAC 1 cut(s) 1452
AclWI GGATC 4 cut(s) 101, 125, 138, 860
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 4 cut(s) 140, 752, 994, 1325
AcuI CTGAAG 1 cut(s) 156
AdeI CACNNNGTG 2 cut(s) 674, 884
AfaI GTAC 2 cut(s) 206, 1586
AfiI CCNNNNNNNGG 1 cut(s) 374
AjnI CCWGG 4 cut(s) 229, 322, 1375, 1541
AluBI AGCT 6 cut(s) 351, 466, 899, 1226, 1282, 1420
AluI AGCT 6 cut(s) 351, 466, 899, 1226, 1282, 1420
Alw21I GWGCWC 2 cut(s) 679, 1583
Alw26I GTCTC 2 cut(s) 489, 594
Alw44I GTGCAC 1 cut(s) 675
AlwI GGATC 4 cut(s) 101, 125, 138, 860
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 6 cut(s) 4, 117, 154, 570, 726, 1539
ApaLI GTGCAC 1 cut(s) 675
ApeKI GCWGC 5 cut(s) 455, 590, 593, 926, 1047
ApoI RAATTY 4 cut(s) 140, 752, 994, 1325
AspA2I CCTAGG 1 cut(s) 1319
AspLEI GCGC 1 cut(s) 1499
AspS9I GGNCC 3 cut(s) 4, 86, 726
AsuHPI GGTGA 2 cut(s) 756, 1391
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 1 cut(s) 86
AvrII CCTAGG 1 cut(s) 1319
BaeGI GKGCMC 2 cut(s) 679, 880
BalI TGGCCA 1 cut(s) 119
BamHI GGATCC 1 cut(s) 130
Bbv12I GWGCWC 2 cut(s) 679, 1583
BbvI GCAGC 5 cut(s) 442, 577, 580, 938, 1034
BccI CCATC 7 cut(s) 15, 299, 717, 737, 832, 1363, 1379
BceAI ACGGC 2 cut(s) 600, 1556
BciT130I CCWGG 4 cut(s) 231, 324, 1377, 1543
BcoDI GTCTC 2 cut(s) 489, 594
BfaI CTAG 5 cut(s) 348, 597, 644, 1037, 1320
BfmI CTRYAG 1 cut(s) 1467
BglII AGATCT 1 cut(s) 1269
BisI GCNGC 5 cut(s) 456, 591, 594, 927, 1048
BlnI CCTAGG 1 cut(s) 1319
BlpI GCTNAGC 2 cut(s) 407, 611
BlsI GCNGC 5 cut(s) 457, 592, 595, 928, 1049
Bme1390I CCNGG 4 cut(s) 231, 324, 1377, 1543
Bme18I GGWCC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 4, 86, 726
BmiI GGNNCC 2 cut(s) 132, 1181
BmrFI CCNGG 4 cut(s) 231, 324, 1377, 1543
BmsI GCATC 6 cut(s) 390, 597, 913, 1448, 1484, 1558
BpmI CTGGAG 1 cut(s) 1445
Bpu10I CCTNAGC 2 cut(s) 276, 1577
Bpu1102I GCTNAGC 2 cut(s) 407, 611
Bsa29I ATCGAT 1 cut(s) 1080
BsaAI YACGTR 1 cut(s) 1584
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 6 cut(s) 82, 114, 585, 1319, 1332, 1518
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 6 cut(s) 418, 443, 1122, 1160, 1428, 1588
BseBI CCWGG 4 cut(s) 231, 324, 1377, 1543
BseCI ATCGAT 1 cut(s) 1080
BseDI CCNNGG 6 cut(s) 82, 114, 585, 1319, 1332, 1518
BseGI GGATG 3 cut(s) 291, 447, 709
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMII CTCAG 8 cut(s) 267, 453, 759, 767, 1183, 1257, 1258, 1568
BseNI ACTGG 6 cut(s) 418, 443, 1122, 1160, 1428, 1588
BseSI GKGCMC 2 cut(s) 679, 880
BseXI GCAGC 5 cut(s) 442, 577, 580, 938, 1034
BsgI GTGCAG 2 cut(s) 246, 723
BshFI GGCC 6 cut(s) 6, 119, 156, 572, 728, 1541
BshVI ATCGAT 1 cut(s) 1080
BsiHKAI GWGCWC 2 cut(s) 679, 1583
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 571
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 2 cut(s) 489, 594
BsmFI GGGAC 1 cut(s) 571
BsnI GGCC 6 cut(s) 6, 119, 156, 572, 728, 1541
Bso31I GGTCTC 1 cut(s) 594
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 3 cut(s) 679, 880, 1583
Bsp143I GATC 8 cut(s) 106, 130, 310, 661, 865, 1077, 1269, 1431
Bsp1720I GCTNAGC 2 cut(s) 407, 611
Bsp19I CCATGG 4 cut(s) 82, 114, 585, 1332
BspANI GGCC 6 cut(s) 6, 119, 156, 572, 728, 1541
BspCNI CTCAG 8 cut(s) 268, 454, 760, 768, 1182, 1257, 1258, 1569
BspDI ATCGAT 1 cut(s) 1080
BspLI GGNNCC 2 cut(s) 132, 1181
BspPI GGATC 4 cut(s) 101, 125, 138, 860
BspTNI GGTCTC 1 cut(s) 594
BsrI ACTGG 6 cut(s) 418, 443, 1122, 1160, 1428, 1588
BssECI CCNNGG 6 cut(s) 82, 114, 585, 1319, 1332, 1518
BssMI GATC 8 cut(s) 106, 130, 310, 661, 865, 1077, 1269, 1431
BssNAI GTATAC 1 cut(s) 1453
BssT1I CCWWGG 5 cut(s) 82, 114, 585, 1319, 1332
Bst1107I GTATAC 1 cut(s) 1453
Bst2UI CCWGG 4 cut(s) 231, 324, 1377, 1543
Bst4CI ACNGT 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 1505
BstBAI YACGTR 1 cut(s) 1584
BstC8I GCNNGC 2 cut(s) 453, 1418
BstDSI CCRYGG 4 cut(s) 82, 114, 585, 1332
BstF5I GGATG 3 cut(s) 291, 447, 709
BstHHI GCGC 1 cut(s) 1499
BstKTI GATC 8 cut(s) 109, 133, 313, 664, 868, 1080, 1272, 1434
BstMAI GTCTC 2 cut(s) 489, 594
BstMBI GATC 8 cut(s) 106, 130, 310, 661, 865, 1077, 1269, 1431
BstMWI GCNNNNNNNGC 3 cut(s) 932, 1436, 1505
BstNI CCWGG 4 cut(s) 231, 324, 1377, 1543
BstNSI RCATGY 3 cut(s) 502, 910, 1483
BstSCI CCNGG 4 cut(s) 229, 322, 1375, 1541
BstSFI CTRYAG 1 cut(s) 1467
BstSLI GKGCMC 2 cut(s) 679, 880
BstV1I GCAGC 5 cut(s) 442, 577, 580, 938, 1034
BstX2I RGATCY 2 cut(s) 130, 1269
BstXI CCANNNNNNTGG 2 cut(s) 127, 701
BstYI RGATCY 2 cut(s) 130, 1269
BstZ17I GTATAC 1 cut(s) 1453
Bsu15I ATCGAT 1 cut(s) 1080
BsuRI GGCC 6 cut(s) 6, 119, 156, 572, 728, 1541
BsuTUI ATCGAT 1 cut(s) 1080
BtgI CCRYGG 4 cut(s) 82, 114, 585, 1332
BtgZI GCGATG 3 cut(s) 367, 432, 1507
BtsCI GGATG 3 cut(s) 291, 447, 709
BtsI GCAGTG 2 cut(s) 735, 1068
BtsIMutI CAGTG 4 cut(s) 411, 735, 1068, 1129
Cac8I GCNNGC 2 cut(s) 453, 1418
CfoI GCGC 1 cut(s) 1499
Cfr13I GGNCC 3 cut(s) 4, 86, 726
ClaI ATCGAT 1 cut(s) 1080
CsiI ACCWGGT 1 cut(s) 229
Csp6I GTAC 2 cut(s) 205, 1585
CspCI CAANNNNNGTGG 8 cut(s) 523, 558, 736, 771, 844, 879, 1119, 1154
CviQI GTAC 2 cut(s) 205, 1585
DpnI GATC 8 cut(s) 108, 132, 312, 663, 867, 1079, 1271, 1433
DpnII GATC 8 cut(s) 106, 130, 310, 661, 865, 1077, 1269, 1431
DraIII CACNNNGTG 2 cut(s) 674, 884
EaeI YGGCCR 1 cut(s) 117
Eco130I CCWWGG 5 cut(s) 82, 114, 585, 1319, 1332
Eco31I GGTCTC 1 cut(s) 594
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 4 cut(s) 229, 322, 1375, 1541
EcoT14I CCWWGG 5 cut(s) 82, 114, 585, 1319, 1332
EcoT22I ATGCAT 1 cut(s) 1441
ErhI CCWWGG 5 cut(s) 82, 114, 585, 1319, 1332
FaqI GGGAC 1 cut(s) 571
FblI GTMKAC 1 cut(s) 1452
Fnu4HI GCNGC 5 cut(s) 456, 591, 594, 927, 1048
FokI GGATG 3 cut(s) 278, 454, 696
Fsp4HI GCNGC 5 cut(s) 456, 591, 594, 927, 1048
FspBI CTAG 5 cut(s) 348, 597, 644, 1037, 1320
FspI TGCGCA 1 cut(s) 1498
GlaI GCGC 1 cut(s) 1498
GluI GCNGC 5 cut(s) 456, 591, 594, 927, 1048
GsuI CTGGAG 1 cut(s) 1445
HaeIII GGCC 6 cut(s) 6, 119, 156, 572, 728, 1541
HapII CCGG 1 cut(s) 254
HhaI GCGC 1 cut(s) 1499
Hin6I GCGC 1 cut(s) 1497
HinP1I GCGC 1 cut(s) 1497
HincII GTYRAC 2 cut(s) 1092, 1144
HindII GTYRAC 2 cut(s) 1092, 1144
HindIII AAGCTT 2 cut(s) 897, 1280
HinfI GANTC 8 cut(s) 257, 417, 432, 705, 1082, 1096, 1127, 1459
HpaII CCGG 1 cut(s) 254
HphI GGTGA 2 cut(s) 756, 1391
Hpy166II GTNNAC 5 cut(s) 47, 677, 1092, 1144, 1453
Hpy188I TCNGA 5 cut(s) 106, 661, 796, 1247, 1515
Hpy188III TCNNGA 9 cut(s) 128, 134, 145, 713, 956, 1037, 1100, 1345, 1576
Hpy8I GTNNAC 5 cut(s) 47, 677, 1092, 1144, 1453
HpyAV CCTTC 4 cut(s) 378, 971, 1170, 1540
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 1583
HpyF10VI GCNNNNNNNGC 3 cut(s) 932, 1436, 1505
HpySE526I ACGT 1 cut(s) 1583
HspAI GCGC 1 cut(s) 1497
Kzo9I GATC 8 cut(s) 106, 130, 310, 661, 865, 1077, 1269, 1431
LmnI GCTCC 1 cut(s) 989
Lsp1109I GCAGC 5 cut(s) 442, 577, 580, 938, 1034
LweI GCATC 6 cut(s) 390, 597, 913, 1448, 1484, 1558
MabI ACCWGGT 1 cut(s) 229
MaeI CTAG 5 cut(s) 348, 597, 644, 1037, 1320
MaeII ACGT 1 cut(s) 1583
MaeIII GTNAC 1 cut(s) 549
MalI GATC 8 cut(s) 108, 132, 312, 663, 867, 1079, 1271, 1433
MboI GATC 8 cut(s) 106, 130, 310, 661, 865, 1077, 1269, 1431
MboII GAAGA 2 cut(s) 149, 1018
MfeI CAATTG 2 cut(s) 1411, 1500
MflI RGATCY 2 cut(s) 130, 1269
MhlI GDGCHC 3 cut(s) 679, 880, 1583
MlsI TGGCCA 1 cut(s) 119
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 2 cut(s) 266, 1453
MmeI TCCRAC 3 cut(s) 409, 682, 1453
Mox20I TGGCCA 1 cut(s) 119
Mph1103I ATGCAT 1 cut(s) 1441
MscI TGGCCA 1 cut(s) 119
MseI TTAA 4 cut(s) 240, 681, 1059, 1109
MslI CAYNNNNRTG 8 cut(s) 15, 479, 921, 1018, 1484, 1535, 1560, 1566
Msp20I TGGCCA 1 cut(s) 119
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 4 cut(s) 231, 324, 1377, 1543
MunI CAATTG 2 cut(s) 1411, 1500
MvaI CCWGG 4 cut(s) 231, 324, 1377, 1543
MwoI GCNNNNNNNGC 3 cut(s) 932, 1436, 1505
NcoI CCATGG 4 cut(s) 82, 114, 585, 1332
NdeII GATC 8 cut(s) 106, 130, 310, 661, 865, 1077, 1269, 1431
NlaIV GGNNCC 2 cut(s) 132, 1181
NmeAIII GCCGAG 1 cut(s) 375
NsbI TGCGCA 1 cut(s) 1498
NsiI ATGCAT 1 cut(s) 1441
NspI RCATGY 3 cut(s) 502, 910, 1483
PaeR7I CTCGAG 1 cut(s) 71
PfeI GAWTC 6 cut(s) 417, 432, 705, 1082, 1096, 1127
PkrI GCNGC 5 cut(s) 457, 592, 595, 928, 1049
PleI GAGTC 2 cut(s) 265, 1453
PpsI GAGTC 2 cut(s) 265, 1453
Ppu21I YACGTR 1 cut(s) 1584
Psp6I CCWGG 4 cut(s) 229, 322, 1375, 1541
PspGI CCWGG 4 cut(s) 229, 322, 1375, 1541
PspN4I GGNNCC 2 cut(s) 132, 1181
PspPI GGNCC 3 cut(s) 4, 86, 726
PspXI VCTCGAGB 1 cut(s) 71
PsuI RGATCY 2 cut(s) 130, 1269
RsaI GTAC 2 cut(s) 206, 1586
RsaNI GTAC 2 cut(s) 205, 1585
RseI CAYNNNNRTG 8 cut(s) 15, 479, 921, 1018, 1484, 1535, 1560, 1566
SaqAI TTAA 4 cut(s) 240, 681, 1059, 1109
SatI GCNGC 5 cut(s) 456, 591, 594, 927, 1048
Sau3AI GATC 8 cut(s) 106, 130, 310, 661, 865, 1077, 1269, 1431
Sau96I GGNCC 3 cut(s) 4, 86, 726
SchI GAGTC 2 cut(s) 266, 1453
ScrFI CCNGG 4 cut(s) 231, 324, 1377, 1543
SduI GDGCHC 3 cut(s) 679, 880, 1583
SexAI ACCWGGT 1 cut(s) 229
SfaNI GCATC 6 cut(s) 390, 597, 913, 1448, 1484, 1558
SfcI CTRYAG 1 cut(s) 1467
Sfr274I CTCGAG 1 cut(s) 71
SinI GGWCC 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 8 cut(s) 15, 479, 921, 1018, 1484, 1535, 1560, 1566
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SspMI CTAG 5 cut(s) 348, 597, 644, 1037, 1320
StyD4I CCNGG 4 cut(s) 229, 322, 1375, 1541
StyI CCWWGG 5 cut(s) 82, 114, 585, 1319, 1332
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 1586
TaqI TCGA 3 cut(s) 72, 921, 1080
TaqII GACCGA 1 cut(s) 1532
TfiI GAWTC 6 cut(s) 417, 432, 705, 1082, 1096, 1127
Tru1I TTAA 4 cut(s) 240, 681, 1059, 1109
Tru9I TTAA 4 cut(s) 240, 681, 1059, 1109
TscAI CASTG 4 cut(s) 418, 742, 1075, 1129
TseI GCWGC 5 cut(s) 455, 590, 593, 926, 1047
TspDTI ATGAA 3 cut(s) 905, 961, 987
TspGWI ACGGA 1 cut(s) 1172
TspRI CASTG 4 cut(s) 418, 742, 1075, 1129
VneI GTGCAC 1 cut(s) 675
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 4 cut(s) 140, 752, 994, 1325
XbaI TCTAGA 1 cut(s) 1036
XceI RCATGY 3 cut(s) 502, 910, 1483
XhoI CTCGAG 1 cut(s) 71
XmaJI CCTAGG 1 cut(s) 1319
XmiI GTMKAC 1 cut(s) 1452
XspI CTAG 5 cut(s) 348, 597, 644, 1037, 1320
Zsp2I ATGCAT 1 cut(s) 1441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.