Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003942

Physical Location & Seq

Genomic Coordinates Reverse (-)

18152094 .. 18153650

Gene Structure 1557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGCCGAAAAGAACACGCGATTCCTCCTCTCCGGTAAGGAAGAAAACGAAGGTGGACAGAATAAGCAACTTACCGAGTGATGTTACGCACAAAATTTTGTCACATATGCCGATCAAGGAGGCAGGGAAGACAAGTGTTTTATCACGTTACTGGAGGTTCCAATGGTCTATGCTTCCCTCCCTTGAGTTTGATCTTGGCAATGACAGAGATGACCCCTACGATGTGGATCACGTTCTCTTACTTCACAATGCTCCCATACACTCTTGCAAGTTCAATGCAGAAAAGGTTTTTATTGAAAGATATGATTTTGACCGATGGATTCTTCATCTATCAAGAAACCCTATCAAACGGTTCATACTGAATTGTTATACGCGTGAAGATGGTAGGAAACCTTACGATGTGTCTTCCTCTTTGTTTTCTTGTCAAGATTTGACTCATTTAGAGTTGAGCGATTGTTGTCTAAGACTCCCGGGGACATTCAAAGGCTTCAGAATGTTGAAGAGCCTTGCTGTTAAGAGAGTTACCGTGCTCCAACCTGATTTGGAAAAACTGATTGCATCTAGTCCTTTGCTTGAGAGATTAACTCTCTGTTATTTGAAGGACATAACCGGTCTGAAAATTGACGCACCCAATCTCCAATTCCTCAAACTTCAAGGAAATTTGCAATATTATGTTGAACCAAAGAATACCTTAAACCTTGTTCATGTTTCACTTGAGCCAAAACGGGCTTATGGGAAGTGGCACAGATTGCTCACAAGCACATCTTCTATAAGAGAACTAGAAATTTCGCTTCGCTCTTTGGTTACCCAAGAAAATGAGGAGGCAACCTCTTGGGATTTCCCCAAACTGCAACGTGTGAAAGTAACCTGCTTCTCTTGTGCCAAGTCTGAAGTAGACTTCATTAAACTTCTGTTTTTAAGCTGCCCTGCTCTCCAAGAACTAGAAGTACTTCCAGTTCAGCCAAAAAAACAGGTACGATTAAGGAGAGAAGAAAACTATCATTTGTCATACAGTACCCAACTGCGACTATTGCAAGTGACCGGCTTATGTGGTGATAACTTAGAAATAGAACTCATCAAGTTTCTGCTATTAAGCTCCCCTGCACTTCAAGAATTACACATTTTGTTTAGGAATGAGAGAAGCAGCAGGAGGATCCGAAGATTAGATGATGATGATGATGCTTTGGGAGACCGAGATTGCACGTTCAATCAAATGCGATTTATGAACATTAGGGGCTTTTCTCATGCCGATGATGAAGTAGGTTTCATCAAATTTTTGCTTAGCCGTTCACCCATGCTTCAGCATTTAACTCTTCAACCTCAGTCTGCCAAAGTTTCTTGGGAAGTAAGCAAGTTGTTGAACGAGATCAAGTGCAACTTAGAGTTGTTGGACCCATTAAATCCGTCTGATGACTACTCCTCCCGAGCTGCTGCTAGATCTAGATCCCCAGATTATTCTGGCTACGATTCCTACGATCTATATCTATATAGAACTAGAAGAGAGAGAAGATATAGGTCCCCCACCCCATTTTCCGACTCAGACTCGGACTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

519

Amino Acids

60.45

Weight (kDa)

8.82

Isoelectric Point (pI)

62.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	21 - 60	1.1e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	100 - 239	2.5e-10	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	104 - 217	5.2e-10	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25150 FvH4_5g01320 FvH4_5g01330 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560
rosa_chinensis	RchiOBHm_Chr5g0049261 RchiOBHm_Chr7g0188631 RchiOBHm_Chr7g0199601
rosa_laevigata	RLG00000003784 RLG00000004676 RLG00000034607
rosa_multiflora	Rmu_co8228169.1_g000001 Rmu_sc0005358.1_g000008 Rmu_sc0009191.1_g000012 Rmu_sc0018006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032400 Rroxscaffold_3G00256570 Rroxscaffold_3G00256590 Rroxscaffold_3G00266180
rosa_rugosa	Rorug05G0246700 Rorug06G0491900 Rorug07G0055400
rosa_samantha	Rh5BG334700 Rh5DG346800 Rh7CG099700 Rh7CG189900 Rh7CG190000 Rh7DG098800
rosa_wichuraiana	Rw7G008360 Rw7G015840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	875
AccI	GTMKAC	1 cut(s)	894
AccII	CGCG	2 cut(s)	18, 373
AclWI	GGATC	4 cut(s)	234, 1147, 1160, 1437
AcsI	RAATTY	4 cut(s)	93, 658, 783, 1271
AcuI	CTGAAG	3 cut(s)	472, 909, 1283
AfaI	GTAC	3 cut(s)	948, 975, 1015
AflIII	ACRYGT	2 cut(s)	371, 853
AgeI	ACCGGT	1 cut(s)	608
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AluBI	AGCT	3 cut(s)	921, 1095, 1427
AluI	AGCT	3 cut(s)	921, 1095, 1427
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	1182
AlwI	GGATC	4 cut(s)	234, 1147, 1160, 1437
Ama87I	CYCGRG	2 cut(s)	469, 1422
ApeKI	GCWGC	4 cut(s)	921, 1143, 1427, 1430
ApoI	RAATTY	4 cut(s)	93, 658, 783, 1271
AsiGI	ACCGGT	1 cut(s)	608
Asp700I	GAANNNNTTC	1 cut(s)	948
AspS9I	GGNCC	2 cut(s)	1390, 1515
AsuC2I	CCSGG	2 cut(s)	470, 471
AsuHPI	GGTGA	2 cut(s)	1064, 1281
AvaI	CYCGRG	2 cut(s)	469, 1422
AvaII	GGWCC	2 cut(s)	1390, 1515
BamHI	GGATCC	1 cut(s)	1152
BbsI	GAAGAC	2 cut(s)	134, 396
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	4 cut(s)	908, 1155, 1414, 1417
BccI	CCATC	2 cut(s)	309, 374
BceAI	ACGGC	1 cut(s)	1269
BcnI	CCSGG	2 cut(s)	470, 471
BcoDI	GTCTC	1 cut(s)	1182
BfaI	CTAG	6 cut(s)	561, 779, 941, 1434, 1440, 1494
BfuAI	ACCTGC	1 cut(s)	875
BglII	AGATCT	1 cut(s)	1436
BisI	GCNGC	4 cut(s)	922, 1144, 1428, 1431
BlpI	GCTNAGC	1 cut(s)	1280
BlsI	GCNGC	4 cut(s)	923, 1145, 1429, 1432
BmcAI	AGTACT	1 cut(s)	948
Bme1390I	CCNGG	2 cut(s)	470, 471
Bme18I	GGWCC	2 cut(s)	1390, 1515
BmeT110I	CYCGRG	2 cut(s)	469, 1422
BmgT120I	GGNCC	2 cut(s)	1390, 1515
BmiI	GGNNCC	4 cut(s)	158, 1154, 1392, 1517
BmrFI	CCNGG	2 cut(s)	470, 471
BmsI	GCATC	2 cut(s)	566, 1168
BpiI	GAAGAC	2 cut(s)	134, 396
BplI	GAGNNNNNCTC	4 cut(s)	568, 600, 812, 844
BpmI	CTGGAG	1 cut(s)	172
Bpu1102I	GCTNAGC	1 cut(s)	1280
BpuEI	CTTGAG	3 cut(s)	203, 593, 734
BpuMI	CCSGG	2 cut(s)	470, 471
BsaBI	GATNNNNATC	3 cut(s)	225, 1441, 1479
BsaI	GGTCTC	1 cut(s)	1182
BsaJI	CCNNGG	2 cut(s)	469, 470
BsaWI	WCCGGW	2 cut(s)	31, 608
BsaXI	ACNNNNNCTCC	4 cut(s)	618, 648, 1403, 1433
Bse118I	RCCGGY	2 cut(s)	608, 1040
Bse1I	ACTGG	2 cut(s)	155, 953
Bse3DI	GCAATG	1 cut(s)	205
Bse8I	GATNNNNATC	3 cut(s)	225, 1441, 1479
BseDI	CCNNGG	2 cut(s)	469, 470
BseJI	GATNNNNATC	3 cut(s)	225, 1441, 1479
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	2 cut(s)	1334, 1551
BseNI	ACTGG	2 cut(s)	155, 953
BseRI	GAGGAG	3 cut(s)	16, 833, 1408
BseXI	GCAGC	4 cut(s)	908, 1155, 1414, 1417
BsgI	GTGCAG	1 cut(s)	1086
Bsh1236I	CGCG	2 cut(s)	18, 373
BshTI	ACCGGT	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	531
BsiHKCI	CYCGRG	2 cut(s)	469, 1422
BsiSI	CCGG	4 cut(s)	32, 470, 609, 1041
BslFI	GGGAC	2 cut(s)	487, 1501
BsmAI	GTCTC	1 cut(s)	1182
BsmFI	GGGAC	2 cut(s)	487, 1501
Bso31I	GGTCTC	1 cut(s)	1182
BsoBI	CYCGRG	2 cut(s)	469, 1422
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	8 cut(s)	111, 190, 226, 1152, 1365, 1436, 1442, 1474
Bsp1720I	GCTNAGC	1 cut(s)	1280
BspCNI	CTCAG	2 cut(s)	1333, 1550
BspFNI	CGCG	2 cut(s)	18, 373
BspLI	GGNNCC	4 cut(s)	158, 1154, 1392, 1517
BspMI	ACCTGC	1 cut(s)	875
BspPI	GGATC	4 cut(s)	234, 1147, 1160, 1437
BspQI	GCTCTTC	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	1182
BsrDI	GCAATG	1 cut(s)	205
BsrFI	RCCGGY	2 cut(s)	608, 1040
BsrI	ACTGG	2 cut(s)	155, 953
BssAI	RCCGGY	2 cut(s)	608, 1040
BssECI	CCNNGG	2 cut(s)	469, 470
BssMI	GATC	8 cut(s)	111, 190, 226, 1152, 1365, 1436, 1442, 1474
Bst4CI	ACNGT	3 cut(s)	351, 526, 1013
Bst6I	CTCTTC	3 cut(s)	494, 1317, 1492
BstAPI	GCANNNNNTGC	1 cut(s)	748
BstDEI	CTNAG	6 cut(s)	461, 1060, 1280, 1320, 1378, 1537
BstEII	GGTNACC	1 cut(s)	802
BstFNI	CGCG	2 cut(s)	18, 373
BstKTI	GATC	8 cut(s)	114, 193, 229, 1155, 1368, 1439, 1445, 1477
BstMAI	GTCTC	1 cut(s)	1182
BstMBI	GATC	8 cut(s)	111, 190, 226, 1152, 1365, 1436, 1442, 1474
BstMWI	GCNNNNNNNGC	2 cut(s)	748, 1030
BstPI	GGTNACC	1 cut(s)	802
BstSCI	CCNGG	2 cut(s)	468, 469
BstUI	CGCG	2 cut(s)	18, 373
BstV1I	GCAGC	4 cut(s)	908, 1155, 1414, 1417
BstV2I	GAAGAC	2 cut(s)	134, 396
BstX2I	RGATCY	3 cut(s)	1152, 1436, 1442
BstYI	RGATCY	3 cut(s)	1152, 1436, 1442
BveI	ACCTGC	1 cut(s)	875
Cfr10I	RCCGGY	2 cut(s)	608, 1040
Cfr13I	GGNCC	2 cut(s)	1390, 1515
Cfr9I	CCCGGG	1 cut(s)	469
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	3 cut(s)	947, 974, 1014
CspAI	ACCGGT	1 cut(s)	608
CviAII	CATG	3 cut(s)	704, 1244, 1294
CviQI	GTAC	3 cut(s)	947, 974, 1014
DdeI	CTNAG	6 cut(s)	461, 1060, 1280, 1320, 1378, 1537
DpnI	GATC	8 cut(s)	113, 192, 228, 1154, 1367, 1438, 1444, 1476
DpnII	GATC	8 cut(s)	111, 190, 226, 1152, 1365, 1436, 1442, 1474
Eam1104I	CTCTTC	3 cut(s)	494, 1317, 1492
EarI	CTCTTC	3 cut(s)	494, 1317, 1492
Eco31I	GGTCTC	1 cut(s)	1182
Eco47I	GGWCC	2 cut(s)	1390, 1515
Eco57I	CTGAAG	3 cut(s)	472, 909, 1283
Eco88I	CYCGRG	2 cut(s)	469, 1422
Eco91I	GGTNACC	1 cut(s)	802
EcoO109I	RGGNCCY	1 cut(s)	1515
EcoO65I	GGTNACC	1 cut(s)	802
FaeI	CATG	3 cut(s)	707, 1247, 1297
FalI	AAGNNNNNCTT	6 cut(s)	674, 706, 748, 780, 1361, 1393
FaqI	GGGAC	2 cut(s)	487, 1501
FatI	CATG	3 cut(s)	703, 1243, 1293
FauNDI	CATATG	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	894
Fnu4HI	GCNGC	4 cut(s)	922, 1144, 1428, 1431
Fsp4HI	GCNGC	4 cut(s)	922, 1144, 1428, 1431
FspBI	CTAG	6 cut(s)	561, 779, 941, 1434, 1440, 1494
GluI	GCNGC	4 cut(s)	922, 1144, 1428, 1431
GsuI	CTGGAG	1 cut(s)	172
HapII	CCGG	4 cut(s)	32, 470, 609, 1041
HgaI	GACGC	1 cut(s)	632
Hin1II	CATG	3 cut(s)	707, 1247, 1297
HinfI	GANTC	7 cut(s)	20, 319, 433, 465, 1466, 1535, 1541
HpaII	CCGG	4 cut(s)	32, 470, 609, 1041
HphI	GGTGA	2 cut(s)	1064, 1281
Hpy166II	GTNNAC	3 cut(s)	55, 895, 1289
Hpy188I	TCNGA	8 cut(s)	491, 615, 889, 1157, 1408, 1534, 1540, 1546
Hpy188III	TCNNGA	5 cut(s)	333, 425, 1109, 1422, 1440
Hpy8I	GTNNAC	3 cut(s)	55, 895, 1289
HpyAV	CCTTC	2 cut(s)	43, 592
HpyCH4III	ACNGT	3 cut(s)	351, 526, 1013
HpyCH4IV	ACGT	4 cut(s)	145, 231, 853, 1202
HpyCH4V	TGCA	9 cut(s)	267, 278, 557, 664, 850, 1033, 1103, 1200, 1374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	748, 1030
HpyF3I	CTNAG	6 cut(s)	461, 1060, 1280, 1320, 1378, 1537
HpySE526I	ACGT	4 cut(s)	145, 231, 853, 1202
Hsp92II	CATG	3 cut(s)	707, 1247, 1297
Kzo9I	GATC	8 cut(s)	111, 190, 226, 1152, 1365, 1436, 1442, 1474
LguI	GCTCTTC	1 cut(s)	494
LmnI	GCTCC	3 cut(s)	256, 534, 1100
Lsp1109I	GCAGC	4 cut(s)	908, 1155, 1414, 1417
LweI	GCATC	2 cut(s)	566, 1168
MaeI	CTAG	6 cut(s)	561, 779, 941, 1434, 1440, 1494
MaeII	ACGT	4 cut(s)	145, 231, 853, 1202
MaeIII	GTNAC	7 cut(s)	82, 99, 146, 520, 802, 862, 1036
MalI	GATC	8 cut(s)	113, 192, 228, 1154, 1367, 1438, 1444, 1476
MboI	GATC	8 cut(s)	111, 190, 226, 1152, 1365, 1436, 1442, 1474
MflI	RGATCY	3 cut(s)	1152, 1436, 1442
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	8 cut(s)	93, 361, 618, 638, 658, 783, 1112, 1271
MluI	ACGCGT	1 cut(s)	371
MlyI	GAGTC	4 cut(s)	427, 459, 1529, 1535
MmeI	TCCRAC	3 cut(s)	556, 1368, 1557
MroXI	GAANNNNTTC	1 cut(s)	948
MseI	TTAA	9 cut(s)	513, 581, 692, 903, 917, 980, 1091, 1307, 1397
MslI	CAYNNNNRTG	1 cut(s)	1248
MspI	CCGG	4 cut(s)	32, 470, 609, 1041
MspR9I	CCNGG	2 cut(s)	470, 471
MvnI	CGCG	2 cut(s)	18, 373
MwoI	GCNNNNNNNGC	2 cut(s)	748, 1030
NciI	CCSGG	2 cut(s)	470, 471
NdeI	CATATG	1 cut(s)	105
NdeII	GATC	8 cut(s)	111, 190, 226, 1152, 1365, 1436, 1442, 1474
NlaIII	CATG	3 cut(s)	707, 1247, 1297
NlaIV	GGNNCC	4 cut(s)	158, 1154, 1392, 1517
NmuCI	GTSAC	2 cut(s)	99, 1036
PciSI	GCTCTTC	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	1 cut(s)	1470
PdmI	GAANNNNTTC	1 cut(s)	948
PfeI	GAWTC	3 cut(s)	20, 319, 1466
PinAI	ACCGGT	1 cut(s)	608
PkrI	GCNGC	4 cut(s)	923, 1145, 1429, 1432
PleI	GAGTC	4 cut(s)	427, 459, 1529, 1535
PpsI	GAGTC	4 cut(s)	427, 459, 1529, 1535
PpuMI	RGGWCCY	1 cut(s)	1515
Psp5II	RGGWCCY	1 cut(s)	1515
PspEI	GGTNACC	1 cut(s)	802
PspN4I	GGNNCC	4 cut(s)	158, 1154, 1392, 1517
PspPI	GGNCC	2 cut(s)	1390, 1515
PspPPI	RGGWCCY	1 cut(s)	1515
PsrI	GAACNNNNNNTAC	4 cut(s)	930, 939, 962, 971
PsuI	RGATCY	3 cut(s)	1152, 1436, 1442
RsaI	GTAC	3 cut(s)	948, 975, 1015
RsaNI	GTAC	3 cut(s)	947, 974, 1014
RseI	CAYNNNNRTG	1 cut(s)	1248
SapI	GCTCTTC	1 cut(s)	494
SaqAI	TTAA	9 cut(s)	513, 581, 692, 903, 917, 980, 1091, 1307, 1397
SatI	GCNGC	4 cut(s)	922, 1144, 1428, 1431
Sau3AI	GATC	8 cut(s)	111, 190, 226, 1152, 1365, 1436, 1442, 1474
Sau96I	GGNCC	2 cut(s)	1390, 1515
ScaI	AGTACT	1 cut(s)	948
SchI	GAGTC	4 cut(s)	427, 459, 1529, 1535
ScrFI	CCNGG	2 cut(s)	470, 471
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	2 cut(s)	566, 1168
SinI	GGWCC	2 cut(s)	1390, 1515
SmaI	CCCGGG	1 cut(s)	471
SmiMI	CAYNNNNRTG	1 cut(s)	1248
SmlI	CTYRAG	3 cut(s)	182, 572, 713
SmoI	CTYRAG	3 cut(s)	182, 572, 713
Sse9I	AATT	8 cut(s)	93, 361, 618, 638, 658, 783, 1112, 1271
SspI	AATATT	1 cut(s)	668
SspMI	CTAG	6 cut(s)	561, 779, 941, 1434, 1440, 1494
StyD4I	CCNGG	2 cut(s)	468, 469
TaaI	ACNGT	3 cut(s)	351, 526, 1013
TaiI	ACGT	4 cut(s)	148, 234, 856, 1205
TaqII	GACCGA	2 cut(s)	327, 1206
TasI	AATT	8 cut(s)	93, 361, 618, 638, 658, 783, 1112, 1271
TatI	WGTACW	1 cut(s)	946
TfiI	GAWTC	3 cut(s)	20, 319, 1466
Tru1I	TTAA	9 cut(s)	513, 581, 692, 903, 917, 980, 1091, 1307, 1397
Tru9I	TTAA	9 cut(s)	513, 581, 692, 903, 917, 980, 1091, 1307, 1397
TseFI	GTSAC	2 cut(s)	99, 1036
TseI	GCWGC	4 cut(s)	921, 1143, 1427, 1430
Tsp45I	GTSAC	2 cut(s)	99, 1036
TspDTI	ATGAA	7 cut(s)	314, 343, 692, 889, 1238, 1255, 1269
TspGWI	ACGGA	1 cut(s)	1392
TspMI	CCCGGG	1 cut(s)	469
VpaK11BI	GGWCC	2 cut(s)	1390, 1515
XapI	RAATTY	4 cut(s)	93, 658, 783, 1271
XbaI	TCTAGA	1 cut(s)	1439
XmaI	CCCGGG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	894
XmnI	GAANNNNTTC	1 cut(s)	948
XspI	CTAG	6 cut(s)	561, 779, 941, 1434, 1440, 1494
ZrmI	AGTACT	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.