Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003942

Physical Location & Seq

Genomic Coordinates Reverse (-)

50937448 .. 50942164

Gene Structure 4717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGAAGGTCGGAGGTGGGTGGAAGGGTGTGAACCGAAGCGGGGAGCTTTTGCTTCTTCTAGAGGCCGGTTCGCCTCTAGCTGCTGCGGATATCGATAGATGGATTTATCGTCTATCAAAATCCTCTTTGAAGAAGTGCACACTGGAGCTGTGGAGGGGTCCTCCTTACAATGTCTCTTCGAGTTTGTTTTTGTGTCAGGATTTGATTCATTTAGAGTTACATAATTGTCTGCTTAAACCCCCGTCGACCTTCAAAGGCTTCTGGAAATTGAAGACCTTAAATATTCAAATGGTTACCATTACGCAAGACATGTTCGAAAAGATGATTGCTTGCTCCCCTCTGCTTGAGAAACTGATTTTATGTGACTTTGCTGGTATCAAAACTATCAACATCGATGCACCAGAACTCCAATACCTTAAGGTCGAAGGTGCTTTTGAGGATGTTGACATTCGGGTGAATACCTTAAACCTTGTTCATGTGTCAATTGAACAACAAAAGGCAGCTTCTATCAGTTGTACCAATTTCTTCAAGTTCTTTTCTCAACTGACTCGTATCGAAAGTCTCTCCATTGATGGTTTTTTCCTAGAGTCTTCTCTTGGTGCCTTGCAAGAGGAGCTGCTGAAACCATATCTATGTCTCAAGTCTCTTTGCTTAGGCATACGCTTGAATAATTTAGATGAGACTTTAGCTGCTGTACGCCTTCTGAGAAGCTCTCCGGCCCTAAAAGAACTAGAAATTTCGGTTCGCCAAGAAGCCGAGGCTGCTGATGCTAATGCAGGAGACGCAACTTTTTGGTTAAATGATAACCAGAAGTTCAGCCAACTGCGACTTGTGAAAGTAACCGGCTTCTCTGGTGTCAAAGCTGAAGTGGACTTCATTAAATTTCTGCTTTTACGCTCCCCTTCTCTTCAACAACTAGAAATTCTGGCTTGGCAACAAGATGGGGCTATTAGGAGAAAAGTGAGCTCTTGGTTAGGCGACAGCCAGAATTATGCATTCAACCAACTACGAGTTGTGAAATTAATTGACATTTCTGGTGTCAAAGCTGAATTAGCACTCATCAGATTTCTGCTTTTCAAGTCACCTGTCCTTGAGAAGATGATTGTTCGGCCTCTTCACCTTACTGGCAATCGTGCTTTAATAAAGAAGCTGCTCCAGTTTAGGCGTGCGTCGGGGAAAGCAGAGATAAATCTGAAGATTAATAAGAACATAAAAGGAGCAGATTTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

410

Amino Acids

46.11

Weight (kDa)

9.19

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	28 - 313	9.2e-18	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	32 - 246	2.2e-11	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25150 FvH4_5g01320 FvH4_5g01330 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560
rosa_chinensis	RchiOBHm_Chr5g0049261 RchiOBHm_Chr7g0188631 RchiOBHm_Chr7g0199601
rosa_laevigata	RLG00000003784 RLG00000004676 RLG00000034607
rosa_multiflora	Rmu_co8228169.1_g000001 Rmu_sc0005358.1_g000008 Rmu_sc0009191.1_g000012 Rmu_sc0018006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032400 Rroxscaffold_3G00256570 Rroxscaffold_3G00256590 Rroxscaffold_3G00266180
rosa_rugosa	Rorug05G0246700 Rorug06G0491900 Rorug07G0055400
rosa_samantha	Rh5BG334700 Rh5DG346800 Rh7CG099700 Rh7CG189900 Rh7CG190000 Rh7DG098800
rosa_wichuraiana	Rw7G008360 Rw7G015840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	599
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	2 cut(s)	39, 86
AcsI	RAATTY	3 cut(s)	735, 881, 921
AcuI	CTGAAG	2 cut(s)	885, 1214
AfaI	GTAC	2 cut(s)	517, 696
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflII	CTTAAG	1 cut(s)	416
AflIII	ACRYGT	1 cut(s)	309
Alw21I	GWGCWC	2 cut(s)	140, 968
Alw26I	GTCTC	6 cut(s)	178, 566, 641, 648, 674, 774
Alw44I	GTGCAC	1 cut(s)	136
AoxI	GGCC	3 cut(s)	63, 717, 1109
ApaLI	GTGCAC	1 cut(s)	136
ApeKI	GCWGC	7 cut(s)	80, 83, 500, 616, 689, 761, 1150
ApoI	RAATTY	3 cut(s)	735, 881, 921
AseI	ATTAAT	2 cut(s)	1022, 1200
AspS9I	GGNCC	2 cut(s)	158, 718
AsuHPI	GGTGA	3 cut(s)	466, 1074, 1109
AsuII	TTCGAA	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	158
BaeGI	GKGCMC	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	968
BbsI	GAAGAC	2 cut(s)	278, 582
Bbv12I	GWGCWC	2 cut(s)	140, 968
BbvI	GCAGC	7 cut(s)	67, 70, 512, 603, 676, 748, 1137
BccI	CCATC	3 cut(s)	93, 566, 935
BcoDI	GTCTC	6 cut(s)	178, 566, 641, 648, 674, 774
BfaI	CTAG	6 cut(s)	59, 77, 584, 731, 917, 1231
BfrI	CTTAAG	1 cut(s)	416
BisI	GCNGC	7 cut(s)	81, 84, 501, 617, 690, 762, 1151
BlsI	GCNGC	7 cut(s)	82, 85, 502, 618, 691, 763, 1152
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	158, 718
BmiI	GGNNCC	2 cut(s)	159, 601
BmsI	GCATC	2 cut(s)	385, 757
BpiI	GAAGAC	2 cut(s)	278, 582
BplI	GAGNNNNNCTC	4 cut(s)	145, 177, 697, 729
BpmI	CTGGAG	2 cut(s)	164, 1139
Bpu10I	CCTNAGC	1 cut(s)	652
Bpu14I	TTCGAA	1 cut(s)	315
BpuEI	CTTGAG	3 cut(s)	365, 623, 1112
Bsa29I	ATCGAT	2 cut(s)	93, 393
BsaJI	CCNNGG	1 cut(s)	756
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	2 cut(s)	65, 842
Bse1I	ACTGG	3 cut(s)	147, 1129, 1156
BseCI	ATCGAT	2 cut(s)	93, 393
BseDI	CCNNGG	1 cut(s)	756
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	695
BseNI	ACTGG	3 cut(s)	147, 1129, 1156
BseRI	GAGGAG	1 cut(s)	626
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	7 cut(s)	67, 70, 512, 603, 676, 748, 1137
BshFI	GGCC	3 cut(s)	65, 719, 1111
BshNI	GGYRCC	1 cut(s)	599
BshVI	ATCGAT	2 cut(s)	93, 393
BsiHKAI	GWGCWC	2 cut(s)	140, 968
BsiSI	CCGG	3 cut(s)	66, 716, 843
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	6 cut(s)	178, 566, 641, 648, 674, 774
BsmBI	CGTCTC	1 cut(s)	774
BsmI	GAATGC	1 cut(s)	995
BsnI	GGCC	3 cut(s)	65, 719, 1111
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	140, 968
BspACI	CCGC	2 cut(s)	39, 86
BspANI	GGCC	3 cut(s)	65, 719, 1111
BspCNI	CTCAG	1 cut(s)	696
BspDI	ATCGAT	2 cut(s)	93, 393
BspLI	GGNNCC	2 cut(s)	159, 601
BspT104I	TTCGAA	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	599
BspTI	CTTAAG	1 cut(s)	416
BsrFI	RCCGGY	2 cut(s)	65, 842
BsrI	ACTGG	3 cut(s)	147, 1129, 1156
BssAI	RCCGGY	2 cut(s)	65, 842
BssECI	CCNNGG	1 cut(s)	756
Bst6I	CTCTTC	3 cut(s)	181, 912, 1119
BstAFI	CTTAAG	1 cut(s)	416
BstBI	TTCGAA	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	331, 1167
BstDEI	CTNAG	2 cut(s)	652, 704
BstEII	GGTNACC	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	445
BstMAI	GTCTC	6 cut(s)	178, 566, 641, 648, 674, 774
BstMWI	GCNNNNNNNGC	5 cut(s)	613, 761, 767, 782, 1052
BstNSI	RCATGY	1 cut(s)	313
BstPI	GGTNACC	1 cut(s)	292
BstSLI	GKGCMC	1 cut(s)	140
BstV1I	GCAGC	7 cut(s)	67, 70, 512, 603, 676, 748, 1137
BstV2I	GAAGAC	2 cut(s)	278, 582
Bsu15I	ATCGAT	2 cut(s)	93, 393
BsuRI	GGCC	3 cut(s)	65, 719, 1111
BsuTUI	ATCGAT	2 cut(s)	93, 393
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	331, 1167
Cfr10I	RCCGGY	2 cut(s)	65, 842
Cfr13I	GGNCC	2 cut(s)	158, 718
ClaI	ATCGAT	2 cut(s)	93, 393
CseI	GACGC	2 cut(s)	791, 1158
Csp6I	GTAC	2 cut(s)	516, 695
CviAII	CATG	2 cut(s)	310, 476
CviQI	GTAC	2 cut(s)	516, 695
DdeI	CTNAG	2 cut(s)	652, 704
Eam1104I	CTCTTC	3 cut(s)	181, 912, 1119
EarI	CTCTTC	3 cut(s)	181, 912, 1119
Ecl136II	GAGCTC	1 cut(s)	966
Eco24I	GRGCYC	1 cut(s)	968
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	966
Eco57I	CTGAAG	2 cut(s)	885, 1214
Eco91I	GGTNACC	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	966
EcoO109I	RGGNCCY	1 cut(s)	158
EcoO65I	GGTNACC	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	997
EcoT38I	GRGCYC	1 cut(s)	968
Esp3I	CGTCTC	1 cut(s)	774
FaeI	CATG	2 cut(s)	313, 479
FaiI	YATR	9 cut(s)	222, 311, 361, 477, 628, 634, 659, 993, 1211
FatI	CATG	2 cut(s)	309, 475
FauI	CCCGC	1 cut(s)	32
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	7 cut(s)	81, 84, 501, 617, 690, 762, 1151
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	968
Fsp4HI	GCNGC	7 cut(s)	81, 84, 501, 617, 690, 762, 1151
FspBI	CTAG	6 cut(s)	59, 77, 584, 731, 917, 1231
GluI	GCNGC	7 cut(s)	81, 84, 501, 617, 690, 762, 1151
GsuI	CTGGAG	2 cut(s)	164, 1139
HaeIII	GGCC	3 cut(s)	65, 719, 1111
HapII	CCGG	3 cut(s)	66, 716, 843
HgaI	GACGC	2 cut(s)	791, 1158
Hin1II	CATG	2 cut(s)	313, 479
HincII	GTYRAC	2 cut(s)	246, 445
HindII	GTYRAC	2 cut(s)	246, 445
HinfI	GANTC	3 cut(s)	205, 547, 587
HpaII	CCGG	3 cut(s)	66, 716, 843
HphI	GGTGA	3 cut(s)	466, 1074, 1109
Hpy166II	GTNNAC	5 cut(s)	31, 138, 246, 445, 871
Hpy188I	TCNGA	4 cut(s)	11, 705, 1064, 1194
Hpy188III	TCNNGA	3 cut(s)	59, 197, 262
Hpy8I	GTNNAC	5 cut(s)	31, 138, 246, 445, 871
Hpy99I	CGWCG	2 cut(s)	247, 1174
HpyAV	CCTTC	5 cut(s)	16, 259, 419, 710, 912
HpyCH4V	TGCA	5 cut(s)	138, 398, 607, 776, 995
HpyF10VI	GCNNNNNNNGC	5 cut(s)	613, 761, 767, 782, 1052
HpyF3I	CTNAG	2 cut(s)	652, 704
Hsp92II	CATG	2 cut(s)	313, 479
LmnI	GCTCC	7 cut(s)	43, 145, 338, 613, 902, 1158, 1217
Lsp1109I	GCAGC	7 cut(s)	67, 70, 512, 603, 676, 748, 1137
LweI	GCATC	2 cut(s)	385, 757
MaeI	CTAG	6 cut(s)	59, 77, 584, 731, 917, 1231
MaeIII	GTNAC	5 cut(s)	216, 292, 362, 838, 1080
MfeI	CAATTG	1 cut(s)	483
MhlI	GDGCHC	2 cut(s)	140, 968
MlyI	GAGTC	2 cut(s)	541, 596
Mph1103I	ATGCAT	1 cut(s)	997
MseI	TTAA	9 cut(s)	234, 278, 417, 464, 797, 879, 1022, 1139, 1200
MslI	CAYNNNNRTG	2 cut(s)	452, 631
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	3 cut(s)	66, 716, 843
MunI	CAATTG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	995
MwoI	GCNNNNNNNGC	5 cut(s)	613, 761, 767, 782, 1052
NlaIII	CATG	2 cut(s)	313, 479
NlaIV	GGNNCC	2 cut(s)	159, 601
NmeAIII	GCCGAG	1 cut(s)	781
NmuCI	GTSAC	2 cut(s)	362, 1080
NsiI	ATGCAT	1 cut(s)	997
NspI	RCATGY	1 cut(s)	313
NspV	TTCGAA	1 cut(s)	315
PciI	ACATGT	1 cut(s)	309
PctI	GAATGC	1 cut(s)	995
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	7 cut(s)	82, 85, 502, 618, 691, 763, 1152
PleI	GAGTC	2 cut(s)	541, 595
PpsI	GAGTC	2 cut(s)	541, 595
PpuMI	RGGWCCY	1 cut(s)	158
PscI	ACATGT	1 cut(s)	309
PshBI	ATTAAT	2 cut(s)	1022, 1200
Psp124BI	GAGCTC	1 cut(s)	968
Psp5II	RGGWCCY	1 cut(s)	158
PspEI	GGTNACC	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	159, 601
PspPI	GGNCC	2 cut(s)	158, 718
PspPPI	RGGWCCY	1 cut(s)	158
RsaI	GTAC	2 cut(s)	517, 696
RsaNI	GTAC	2 cut(s)	516, 695
RseI	CAYNNNNRTG	2 cut(s)	452, 631
SacI	GAGCTC	1 cut(s)	968
SalI	GTCGAC	1 cut(s)	244
SaqAI	TTAA	9 cut(s)	234, 278, 417, 464, 797, 879, 1022, 1139, 1200
SatI	GCNGC	7 cut(s)	81, 84, 501, 617, 690, 762, 1151
Sau96I	GGNCC	2 cut(s)	158, 718
SchI	GAGTC	2 cut(s)	541, 596
SduI	GDGCHC	2 cut(s)	140, 968
SfaNI	GCATC	2 cut(s)	385, 757
SfuI	TTCGAA	1 cut(s)	315
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	452, 631
SmlI	CTYRAG	4 cut(s)	344, 416, 638, 1091
SmoI	CTYRAG	4 cut(s)	344, 416, 638, 1091
SsiI	CCGC	2 cut(s)	39, 86
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	6 cut(s)	59, 77, 584, 731, 917, 1231
SstI	GAGCTC	1 cut(s)	968
TaqI	TCGA	7 cut(s)	93, 179, 245, 315, 393, 423, 555
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	9 cut(s)	234, 278, 417, 464, 797, 879, 1022, 1139, 1200
Tru9I	TTAA	9 cut(s)	234, 278, 417, 464, 797, 879, 1022, 1139, 1200
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	2 cut(s)	362, 1080
TseI	GCWGC	7 cut(s)	80, 83, 500, 616, 689, 761, 1150
Tsp45I	GTSAC	2 cut(s)	362, 1080
TspDTI	ATGAA	4 cut(s)	17, 197, 464, 865
TspRI	CASTG	1 cut(s)	147
Vha464I	CTTAAG	1 cut(s)	416
VneI	GTGCAC	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	158
VspI	ATTAAT	2 cut(s)	1022, 1200
XapI	RAATTY	3 cut(s)	735, 881, 921
XbaI	TCTAGA	1 cut(s)	58
XceI	RCATGY	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	6 cut(s)	59, 77, 584, 731, 917, 1231
Zsp2I	ATGCAT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.