Rh7DG098800

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003942
Physical Location & Seq
Forward (+)
8231499 .. 8237334
5836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG098800.1

Sequence Viewer

Length: 768 bp
ATGGAACTACCCTTTTTGAACATGGACATGTTTGATAATGACGAAGATGTTAAGGTTCACCAAGAAGGTGAGGCTACAGCTGGAGAAGCAACCTATTGGTTAAATGAAAACCATAATTGGGCATTCACCCAACTGCGACTTATGAAAGTGACTGCCTTCTCTGGTGTTAAAGCTGAAGTAGACTTCATCAAATTTCTTCTTTTGAGCTCTCCTGCTCTTGAAGAGCTAGAAATTGTGGCACCTTTTGAAGATCAGGCTGTTTCAGGAGAAGTGAATTCTTGGTTAGATGACAACCTGAACTGGGCATTCACCCAACTGCGACTTGTGAAAGTAACGTGCTTCTCTGGTGTGAAAGCTGAGGTAGACTTCATTAAGTTTCTGCTTTTGAGCTCTCCTGCTCTTCAAGAACTACAAATCTCGGCTCGCCATCATGTTGTTCTGGGAGAGGTGAACCCTTGGTCAGATGACAACCAGAATTGTGTATTTACCCACCTACGAGTTGTGCAATTAACAGGCATTCATGGAGTCAAACCTGAAGTAGATTTCATCAGATTTCTGCTTTCAAGTTCACCTGTGCTTGAGAGGATGACTATTCAGCCTACTTCTGTAGATTGTTCTTTGGAGCTGTTAAAGAAATTGGTCCAGTTTAGGCGAGCGTCAGTGGATGCAGAGATAAGCTACTTGGATCCATTAAGTTCAGAATCTGATGAGGATTCTGACTTTGATGATGATTATACTGATCTTGAGTCTGATTCAGATTCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

255

Amino Acids

28.87

Weight (kDa)

4.28

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 160 - 198 8.6e-08 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 238
AccI GTMKAC 2 cut(s) 180, 363
AclWI GGATC 2 cut(s) 680, 693
AcsI RAATTY 2 cut(s) 191, 274
AcuI CTGAAG 2 cut(s) 195, 555
AfiI CCNNNNNNNGG 2 cut(s) 118, 301
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 5 cut(s) 19, 221, 248, 404, 564
AluBI AGCT 8 cut(s) 80, 173, 207, 226, 356, 390, 625, 678
AluI AGCT 8 cut(s) 80, 173, 207, 226, 356, 390, 625, 678
Alw21I GWGCWC 2 cut(s) 209, 392
AlwI GGATC 2 cut(s) 680, 693
AlwNI CAGNNNCTG 2 cut(s) 704, 761
ApoI RAATTY 2 cut(s) 191, 274
AspS9I GGNCC 1 cut(s) 640
AsuHPI GGTGA 6 cut(s) 50, 80, 118, 301, 460, 561
AvaII GGWCC 1 cut(s) 640
BamHI GGATCC 1 cut(s) 685
BanI GGYRCC 1 cut(s) 238
BanII GRGCYC 2 cut(s) 209, 392
Bbv12I GWGCWC 2 cut(s) 209, 392
BbvCI CCTCAGC 1 cut(s) 357
BccI CCATC 1 cut(s) 435
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 2 cut(s) 75, 606
Bme18I GGWCC 1 cut(s) 640
BmgT120I GGNCC 1 cut(s) 640
BmiI GGNNCC 2 cut(s) 240, 687
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 1 cut(s) 655
BmuI ACTGGG 1 cut(s) 310
BpmI CTGGAG 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 2 cut(s) 599, 764
BsaJI CCNNGG 1 cut(s) 455
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 301
Bse1I ACTGG 2 cut(s) 305, 643
BseDI CCNNGG 1 cut(s) 455
BseGI GGATG 2 cut(s) 591, 670
BseLI CCNNNNNNNGG 2 cut(s) 118, 301
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 305, 643
BshNI GGYRCC 1 cut(s) 238
BsiHKAI GWGCWC 2 cut(s) 209, 392
BslI CCNNNNNNNGG 2 cut(s) 118, 301
BsmI GAATGC 3 cut(s) 122, 305, 516
Bsp1286I GDGCHC 2 cut(s) 209, 392
Bsp143I GATC 3 cut(s) 250, 685, 739
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 2 cut(s) 240, 687
BspPI GGATC 2 cut(s) 680, 693
BspQI GCTCTTC 2 cut(s) 216, 405
BspT107I GGYRCC 1 cut(s) 238
BsrI ACTGG 2 cut(s) 305, 643
BssECI CCNNGG 1 cut(s) 455
BssMI GATC 3 cut(s) 250, 685, 739
BssT1I CCWWGG 1 cut(s) 455
Bst6I CTCTTC 2 cut(s) 216, 405
BstC8I GCNNGC 2 cut(s) 424, 654
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 591, 670
BstKTI GATC 3 cut(s) 253, 688, 742
BstMBI GATC 3 cut(s) 250, 685, 739
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 31
BstSFI CTRYAG 2 cut(s) 75, 606
BstX2I RGATCY 1 cut(s) 685
BstYI RGATCY 1 cut(s) 685
BtsCI GGATG 2 cut(s) 591, 670
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 2 cut(s) 424, 654
CaiI CAGNNNCTG 2 cut(s) 704, 761
Cfr13I GGNCC 1 cut(s) 640
CseI GACGC 1 cut(s) 645
CviAII CATG 4 cut(s) 22, 28, 431, 521
DdeI CTNAG 1 cut(s) 357
DpnI GATC 3 cut(s) 252, 687, 741
DpnII GATC 3 cut(s) 250, 685, 739
Eam1104I CTCTTC 2 cut(s) 216, 405
EarI CTCTTC 2 cut(s) 216, 405
Ecl136II GAGCTC 2 cut(s) 207, 390
Eco130I CCWWGG 1 cut(s) 455
Eco24I GRGCYC 2 cut(s) 209, 392
Eco47I GGWCC 1 cut(s) 640
Eco53kI GAGCTC 2 cut(s) 207, 390
Eco57I CTGAAG 2 cut(s) 195, 555
EcoICRI GAGCTC 2 cut(s) 207, 390
EcoRI GAATTC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 455
EcoT38I GRGCYC 2 cut(s) 209, 392
ErhI CCWWGG 1 cut(s) 455
FaeI CATG 4 cut(s) 25, 31, 434, 524
FaiI YATR 7 cut(s) 23, 29, 114, 143, 432, 522, 735
FatI CATG 4 cut(s) 21, 27, 430, 520
FblI GTMKAC 2 cut(s) 180, 363
FokI GGATG 2 cut(s) 598, 677
FriOI GRGCYC 2 cut(s) 209, 392
FspBI CTAG 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 102
HgaI GACGC 1 cut(s) 645
Hin1II CATG 4 cut(s) 25, 31, 434, 524
HinfI GANTC 6 cut(s) 525, 701, 713, 746, 752, 758
HphI GGTGA 6 cut(s) 50, 80, 118, 301, 460, 561
Hpy166II GTNNAC 5 cut(s) 58, 181, 364, 451, 569
Hpy188I TCNGA 8 cut(s) 463, 551, 700, 706, 718, 751, 757, 763
Hpy188III TCNNGA 4 cut(s) 218, 264, 404, 743
Hpy8I GTNNAC 5 cut(s) 58, 181, 364, 451, 569
HpyAV CCTTC 2 cut(s) 59, 166
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 2 cut(s) 505, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 1 cut(s) 335
Hsp92II CATG 4 cut(s) 25, 31, 434, 524
Kzo9I GATC 3 cut(s) 250, 685, 739
LguI GCTCTTC 2 cut(s) 216, 405
LmnI GCTCC 1 cut(s) 622
LweI GCATC 1 cut(s) 655
MaeI CTAG 1 cut(s) 227
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 2 cut(s) 148, 331
MalI GATC 3 cut(s) 252, 687, 741
MboI GATC 3 cut(s) 250, 685, 739
MboII GAAGA 5 cut(s) 56, 188, 233, 260, 392
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 2 cut(s) 209, 392
MluCI AATT 7 cut(s) 115, 191, 231, 274, 475, 506, 635
MlyI GAGTC 2 cut(s) 534, 755
MnlI CCTC 5 cut(s) 64, 352, 439, 576, 703
MseI TTAA 7 cut(s) 51, 101, 168, 372, 509, 629, 692
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 80
Mva1269I GAATGC 3 cut(s) 122, 305, 516
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 3 cut(s) 250, 685, 739
NlaIII CATG 4 cut(s) 25, 31, 434, 524
NlaIV GGNNCC 2 cut(s) 240, 687
NmeAIII GCCGAG 1 cut(s) 398
NmuCI GTSAC 1 cut(s) 148
NspI RCATGY 1 cut(s) 31
PciI ACATGT 1 cut(s) 27
PciSI GCTCTTC 2 cut(s) 216, 405
PctI GAATGC 3 cut(s) 122, 305, 516
PfeI GAWTC 4 cut(s) 701, 713, 752, 758
PleI GAGTC 2 cut(s) 533, 754
PpsI GAGTC 2 cut(s) 533, 754
PscI ACATGT 1 cut(s) 27
Psp124BI GAGCTC 2 cut(s) 209, 392
PspN4I GGNNCC 2 cut(s) 240, 687
PspPI GGNCC 1 cut(s) 640
PstNI CAGNNNCTG 2 cut(s) 704, 761
PsuI RGATCY 1 cut(s) 685
PvuII CAGCTG 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 26
SacI GAGCTC 2 cut(s) 209, 392
SapI GCTCTTC 2 cut(s) 216, 405
SaqAI TTAA 7 cut(s) 51, 101, 168, 372, 509, 629, 692
Sau3AI GATC 3 cut(s) 250, 685, 739
Sau96I GGNCC 1 cut(s) 640
SchI GAGTC 2 cut(s) 534, 755
SduI GDGCHC 2 cut(s) 209, 392
SfaNI GCATC 1 cut(s) 655
SfcI CTRYAG 2 cut(s) 75, 606
SinI GGWCC 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 2 cut(s) 578, 743
SmoI CTYRAG 2 cut(s) 578, 743
Sse9I AATT 7 cut(s) 115, 191, 231, 274, 475, 506, 635
SspMI CTAG 1 cut(s) 227
SstI GAGCTC 2 cut(s) 209, 392
StyI CCWWGG 1 cut(s) 455
TaiI ACGT 1 cut(s) 338
TasI AATT 7 cut(s) 115, 191, 231, 274, 475, 506, 635
TfiI GAWTC 4 cut(s) 701, 713, 752, 758
Tru1I TTAA 7 cut(s) 51, 101, 168, 372, 509, 629, 692
Tru9I TTAA 7 cut(s) 51, 101, 168, 372, 509, 629, 692
TscAI CASTG 1 cut(s) 666
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 6 cut(s) 120, 158, 175, 358, 509, 535
TspRI CASTG 1 cut(s) 666
VpaK11BI GGWCC 1 cut(s) 640
XapI RAATTY 2 cut(s) 191, 274
XceI RCATGY 1 cut(s) 31
XmiI GTMKAC 2 cut(s) 180, 363
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.