Rw7G008360

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
7630194 .. 7632916
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G008360.1

Sequence Viewer

Length: 1653 bp
ATGACGATGGAGTTGGACAGAATAAGCAACTTACCTGGTGGTGTTATACAAAAGATTTTGTCATATTTGCCGATCAGGGAGGCGGTGAGGACATGTGTTTTGTCGAGCAACTGGAGGTGCAAATGGGCTATGCTTCCCCGTCTCGTGTTTGATGATCATCAAATCGGAACAACCAGCAAGGCGAGGAGGAGGAAAACTTCATTTGTGGGCATTGTTGATCGTGTTCTGCTACTTCAAATCGGCCCTGTAGATGCTTTTGAGCTTGTTTATCGGAAATATATAGCCGCTAGTGACGTTGACAGATGGATTCTCCATTTGACAAGAAAATCTTTGAAGGAGTTCACACTCACAAAATCCAGGGGGTCTCAGTACAAGATATCGTCACGTTTGTTTTCTTGCCAAGAGTTGATTCATTTGGATTTAAACAATTGTTCGCTTTGCCCCCCTTCGAGATTCAAAGGCTTCCGGAGATTGAAGAGCCTTCGGCTTCAAAACATTACCGTTGTCCAAGATGTGTTTGAAAAATTGATTGGTTCCTGCCCCTTGCTTGAGAGGCTGACTCTAATTGACCTGAATGGTATTACCCATCTCAAGATTGATGCACCTAATCTCCAATTCCTTGAAGTCCAAGATACCTTTGAGGATGTTAAGGTGGAGAATACCTTAAATCTGGTTGATGTTTTAATTGATTTTGGTGAAGCTTCTAGCTACTGTAGCAATTTGCTCAAGTATTTTGTTCAGCTACCACTTATGGAAAGGCTTACAATCAAGGGTTTCCTTTCAAAGTGTGCTATTGGTTCCTCGGCAGAGGAGCTGCCTAAACCATGTCGATGTCTGAAGTTCCTTTCTATAGGCATACGCTTGAATAATTTGGAGGAGATATTAGCTGCTATATGCTTTCTGAGAAGCTCACCTGCTCTACAAGAACTCAAAATTTCAGTTCACCAAGAAGGTGAGGCTACAGCTGGAGAAGCAACCTATTGGTTAAATGAAAACCATAATTGGGCATTCACCCAACTGCGACTTATGAAAGTGACTGCCTTCTCTGGTGTTAAAGCTGAAGTAGACTTCATCAAATTTCTTCTTTTGAGCTCTCCTGCTCTTGAAGAGCTAGAAATTGTGGCACCTTTTGAAGATCAGGTTGTTTCAGGAGAAGTGAATTCTTGGTTAGATGACAACCTGAACTGGGCATTCACCCAACTGCGACTTGTGAAAGTAACGTGCTTCTCTGGTGTGAAAGCTGAGGTAGACTTCATTAAGTTTCTGCTTTTGAGCTCTCCTGCTCTTCAAGAACTACAAATCTCGGCCCGCCATCATGTTGTTCTGGGAGAGGTGAACCCTTGGTCAGATGACAACCAGAATTGTGTATTTACCCACCTACGAGTTGTGCAATTAACAGGCATTCATGGAGTCAAACCTGAAGTAGATTTCATCAGATTTCTGCTTTCAAGTTCACCTGTGCTTGAGAGGATGACTATTCAGCCTACTTCTGTAGATTGTTCTTTGGAGCTGTTAAAGAAATTGGTCCAGTTTAGGCGAGCGTCAGTGGATGCAGAGATAAGCTACTTGGATCCATTAAGTTCAGAATCTGATGAGGATTCTGACTTTGATGATGATTATACTGATCTTGAGTCTGATTCAGATTCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

550

Amino Acids

62.38

Weight (kDa)

5.42

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 91 - 372 8.7e-20 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 99 - 312 1.3e-17 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 455 - 493 2.5e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 922
Acc36I ACCTGC 1 cut(s) 922
AccB1I GGYRCC 1 cut(s) 1123
AccI GTMKAC 2 cut(s) 1065, 1248
AccIII TCCGGA 1 cut(s) 465
AciI CCGC 3 cut(s) 83, 285, 1309
AclWI GGATC 2 cut(s) 1565, 1578
AcsI RAATTY 3 cut(s) 933, 1076, 1159
AcuI CTGAAG 3 cut(s) 857, 1080, 1440
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 2 cut(s) 1003, 1186
AflIII ACRYGT 1 cut(s) 92
AjnI CCWGG 2 cut(s) 34, 356
AjuI GAANNNNNNNTTGG 4 cut(s) 393, 425, 513, 545
Alw21I GWGCWC 2 cut(s) 1094, 1277
Alw26I GTCTC 2 cut(s) 146, 369
AlwI GGATC 2 cut(s) 1565, 1578
AlwNI CAGNNNCTG 2 cut(s) 1589, 1646
Aor13HI TCCGGA 1 cut(s) 465
AoxI GGCC 2 cut(s) 241, 1305
ApeKI GCWGC 2 cut(s) 814, 887
ApoI RAATTY 3 cut(s) 933, 1076, 1159
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
Asp700I GAANNNNTTC 1 cut(s) 338
AspS9I GGNCC 3 cut(s) 242, 1306, 1525
AsuHPI GGTGA 9 cut(s) 97, 707, 903, 935, 965, 1003, 1186, 1345, 1446
AvaII GGWCC 1 cut(s) 1525
BamHI GGATCC 1 cut(s) 1570
BanI GGYRCC 1 cut(s) 1123
BanII GRGCYC 2 cut(s) 1094, 1277
BauI CACGAG 1 cut(s) 143
Bbv12I GWGCWC 2 cut(s) 1094, 1277
BbvCI CCTCAGC 1 cut(s) 1242
BbvI GCAGC 2 cut(s) 801, 874
BccI CCATC 3 cut(s) 297, 594, 1320
BciT130I CCWGG 2 cut(s) 36, 358
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 2 cut(s) 146, 369
BfaI CTAG 3 cut(s) 288, 705, 1112
BfmI CTRYAG 5 cut(s) 246, 712, 849, 960, 1491
BfuAI ACCTGC 1 cut(s) 922
BisI GCNGC 3 cut(s) 285, 815, 888
BlsI GCNGC 3 cut(s) 286, 816, 889
Bme1390I CCNGG 2 cut(s) 36, 358
Bme18I GGWCC 1 cut(s) 1525
BmgT120I GGNCC 3 cut(s) 242, 1306, 1525
BmiI GGNNCC 4 cut(s) 535, 799, 1125, 1572
BmrFI CCNGG 2 cut(s) 36, 358
BmrI ACTGGG 1 cut(s) 1195
BmsI GCATC 3 cut(s) 241, 589, 1540
BmuI ACTGGG 1 cut(s) 1195
BplI GAGNNNNNCTC 2 cut(s) 544, 576
BpmI CTGGAG 2 cut(s) 133, 987
Bpu10I CCTNAGC 1 cut(s) 1242
BpuEI CTTGAG 5 cut(s) 569, 575, 710, 1484, 1649
BsaBI GATNNNNATC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 3 cut(s) 357, 801, 1340
BsaWI WCCGGW 1 cut(s) 465
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bsc4I CCNNNNNNNGG 2 cut(s) 1003, 1186
Bse1I ACTGG 3 cut(s) 116, 1190, 1528
Bse8I GATNNNNATC 1 cut(s) 156
BseAI TCCGGA 1 cut(s) 465
BseBI CCWGG 2 cut(s) 36, 358
BseDI CCNNGG 3 cut(s) 357, 801, 1340
BseGI GGATG 3 cut(s) 649, 1476, 1555
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 2 cut(s) 1003, 1186
BseMII CTCAG 3 cut(s) 380, 893, 1233
BseNI ACTGG 3 cut(s) 116, 1190, 1528
BseRI GAGGAG 4 cut(s) 199, 202, 824, 890
BseXI GCAGC 2 cut(s) 801, 874
BshFI GGCC 2 cut(s) 243, 1307
BshNI GGYRCC 1 cut(s) 1123
BsiHKAI GWGCWC 2 cut(s) 1094, 1277
BsiSI CCGG 1 cut(s) 466
BslI CCNNNNNNNGG 2 cut(s) 1003, 1186
BsmAI GTCTC 2 cut(s) 146, 369
BsmBI CGTCTC 1 cut(s) 146
BsmI GAATGC 3 cut(s) 1007, 1190, 1401
BsnI GGCC 2 cut(s) 243, 1307
Bso31I GGTCTC 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 1094, 1277
Bsp13I TCCGGA 1 cut(s) 465
Bsp143I GATC 6 cut(s) 72, 154, 217, 1135, 1570, 1624
BspACI CCGC 3 cut(s) 83, 285, 1309
BspANI GGCC 2 cut(s) 243, 1307
BspCNI CTCAG 3 cut(s) 379, 894, 1234
BspEI TCCGGA 1 cut(s) 465
BspLI GGNNCC 4 cut(s) 535, 799, 1125, 1572
BspMI ACCTGC 1 cut(s) 922
BspPI GGATC 2 cut(s) 1565, 1578
BspQI GCTCTTC 3 cut(s) 470, 1101, 1290
BspT107I GGYRCC 1 cut(s) 1123
BspTNI GGTCTC 1 cut(s) 369
BsrI ACTGG 3 cut(s) 116, 1190, 1528
BssECI CCNNGG 3 cut(s) 357, 801, 1340
BssMI GATC 6 cut(s) 72, 154, 217, 1135, 1570, 1624
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 1340
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 2 cut(s) 36, 358
Bst4CI ACNGT 2 cut(s) 502, 713
Bst6I CTCTTC 3 cut(s) 470, 1101, 1290
BstC8I GCNNGC 2 cut(s) 1309, 1539
BstDEI CTNAG 3 cut(s) 366, 902, 1242
BstF5I GGATG 3 cut(s) 649, 1476, 1555
BstKTI GATC 6 cut(s) 75, 157, 220, 1138, 1573, 1627
BstMAI GTCTC 2 cut(s) 146, 369
BstMBI GATC 6 cut(s) 72, 154, 217, 1135, 1570, 1624
BstMWI GCNNNNNNNGC 3 cut(s) 553, 714, 971
BstNI CCWGG 2 cut(s) 36, 358
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 2 cut(s) 34, 356
BstSFI CTRYAG 5 cut(s) 246, 712, 849, 960, 1491
BstV1I GCAGC 2 cut(s) 801, 874
BstX2I RGATCY 1 cut(s) 1570
BstYI RGATCY 1 cut(s) 1570
BsuRI GGCC 2 cut(s) 243, 1307
BtsCI GGATG 3 cut(s) 649, 1476, 1555
BtsIMutI CAGTG 1 cut(s) 1551
BveI ACCTGC 1 cut(s) 922
Cac8I GCNNGC 2 cut(s) 1309, 1539
CaiI CAGNNNCTG 2 cut(s) 1589, 1646
Cfr13I GGNCC 3 cut(s) 242, 1306, 1525
CseI GACGC 1 cut(s) 1530
CsiI ACCWGGT 1 cut(s) 34
Csp6I GTAC 1 cut(s) 370
CviAII CATG 4 cut(s) 93, 825, 1316, 1406
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 3 cut(s) 366, 902, 1242
DpnI GATC 6 cut(s) 74, 156, 219, 1137, 1572, 1626
DpnII GATC 6 cut(s) 72, 154, 217, 1135, 1570, 1624
DraI TTTAAA 1 cut(s) 423
Eam1104I CTCTTC 3 cut(s) 470, 1101, 1290
EarI CTCTTC 3 cut(s) 470, 1101, 1290
Ecl136II GAGCTC 2 cut(s) 1092, 1275
Eco130I CCWWGG 1 cut(s) 1340
Eco24I GRGCYC 2 cut(s) 1094, 1277
Eco31I GGTCTC 1 cut(s) 369
Eco32I GATATC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 1525
Eco53kI GAGCTC 2 cut(s) 1092, 1275
Eco57I CTGAAG 3 cut(s) 857, 1080, 1440
EcoICRI GAGCTC 2 cut(s) 1092, 1275
EcoRI GAATTC 1 cut(s) 1159
EcoRII CCWGG 2 cut(s) 34, 356
EcoRV GATATC 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 1340
EcoT38I GRGCYC 2 cut(s) 1094, 1277
ErhI CCWWGG 1 cut(s) 1340
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 4 cut(s) 96, 828, 1319, 1409
FalI AAGNNNNNCTT 2 cut(s) 313, 345
FatI CATG 4 cut(s) 92, 824, 1315, 1405
FauI CCCGC 1 cut(s) 1316
FbaI TGATCA 1 cut(s) 154
FblI GTMKAC 2 cut(s) 1065, 1248
Fnu4HI GCNGC 3 cut(s) 285, 815, 888
FokI GGATG 3 cut(s) 656, 1483, 1562
FriOI GRGCYC 2 cut(s) 1094, 1277
Fsp4HI GCNGC 3 cut(s) 285, 815, 888
FspBI CTAG 3 cut(s) 288, 705, 1112
GluI GCNGC 3 cut(s) 285, 815, 888
GsuI CTGGAG 2 cut(s) 133, 987
HaeIII GGCC 2 cut(s) 243, 1307
HapII CCGG 1 cut(s) 466
HgaI GACGC 1 cut(s) 1530
Hin1II CATG 4 cut(s) 96, 828, 1319, 1409
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HindIII AAGCTT 1 cut(s) 699
HpaII CCGG 1 cut(s) 466
HphI GGTGA 9 cut(s) 97, 707, 903, 935, 965, 1003, 1186, 1345, 1446
Hpy166II GTNNAC 7 cut(s) 298, 342, 943, 1066, 1249, 1336, 1454
Hpy188III TCNNGA 7 cut(s) 450, 466, 592, 1103, 1149, 1289, 1628
Hpy8I GTNNAC 7 cut(s) 298, 342, 943, 1066, 1249, 1336, 1454
HpyAV CCTTC 5 cut(s) 328, 456, 491, 944, 1051
HpyCH4III ACNGT 2 cut(s) 502, 713
HpyCH4IV ACGT 3 cut(s) 294, 385, 1220
HpyCH4V TGCA 4 cut(s) 120, 602, 1390, 1553
HpyF10VI GCNNNNNNNGC 3 cut(s) 553, 714, 971
HpyF3I CTNAG 3 cut(s) 366, 902, 1242
HpySE526I ACGT 3 cut(s) 294, 385, 1220
Hsp92II CATG 4 cut(s) 96, 828, 1319, 1409
Kpn2I TCCGGA 1 cut(s) 465
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 6 cut(s) 72, 154, 217, 1135, 1570, 1624
LguI GCTCTTC 3 cut(s) 470, 1101, 1290
LmnI GCTCC 2 cut(s) 811, 1507
Lsp1109I GCAGC 2 cut(s) 801, 874
LweI GCATC 3 cut(s) 241, 589, 1540
MabI ACCWGGT 1 cut(s) 34
MaeI CTAG 3 cut(s) 288, 705, 1112
MaeII ACGT 3 cut(s) 294, 385, 1220
MaeIII GTNAC 4 cut(s) 290, 381, 1033, 1216
MalI GATC 6 cut(s) 74, 156, 219, 1137, 1572, 1626
MboI GATC 6 cut(s) 72, 154, 217, 1135, 1570, 1624
MboII GAAGA 5 cut(s) 487, 1073, 1118, 1145, 1277
MfeI CAATTG 1 cut(s) 427
MflI RGATCY 1 cut(s) 1570
MhlI GDGCHC 2 cut(s) 1094, 1277
MlyI GAGTC 3 cut(s) 553, 1419, 1640
MroI TCCGGA 1 cut(s) 465
MroXI GAANNNNTTC 1 cut(s) 338
MslI CAYNNNNRTG 1 cut(s) 829
MspA1I CMGCKG 1 cut(s) 965
MspI CCGG 1 cut(s) 466
MspR9I CCNGG 2 cut(s) 36, 358
MunI CAATTG 1 cut(s) 427
Mva1269I GAATGC 3 cut(s) 1007, 1190, 1401
MvaI CCWGG 2 cut(s) 36, 358
MwoI GCNNNNNNNGC 3 cut(s) 553, 714, 971
NdeII GATC 6 cut(s) 72, 154, 217, 1135, 1570, 1624
NlaIII CATG 4 cut(s) 96, 828, 1319, 1409
NlaIV GGNNCC 4 cut(s) 535, 799, 1125, 1572
NmeAIII GCCGAG 2 cut(s) 782, 1283
NmuCI GTSAC 3 cut(s) 290, 381, 1033
NspI RCATGY 1 cut(s) 96
PaqCI CACCTGC 1 cut(s) 922
PciI ACATGT 1 cut(s) 92
PciSI GCTCTTC 3 cut(s) 470, 1101, 1290
PctI GAATGC 3 cut(s) 1007, 1190, 1401
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 7 cut(s) 307, 409, 453, 1586, 1598, 1637, 1643
PkrI GCNGC 3 cut(s) 286, 816, 889
PleI GAGTC 3 cut(s) 553, 1418, 1639
PpsI GAGTC 3 cut(s) 553, 1418, 1639
PscI ACATGT 1 cut(s) 92
Psp124BI GAGCTC 2 cut(s) 1094, 1277
Psp6I CCWGG 2 cut(s) 34, 356
PspGI CCWGG 2 cut(s) 34, 356
PspN4I GGNNCC 4 cut(s) 535, 799, 1125, 1572
PspPI GGNCC 3 cut(s) 242, 1306, 1525
PstNI CAGNNNCTG 2 cut(s) 1589, 1646
PsuI RGATCY 1 cut(s) 1570
PvuII CAGCTG 1 cut(s) 965
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 1 cut(s) 829
SacI GAGCTC 2 cut(s) 1094, 1277
SapI GCTCTTC 3 cut(s) 470, 1101, 1290
SatI GCNGC 3 cut(s) 285, 815, 888
Sau3AI GATC 6 cut(s) 72, 154, 217, 1135, 1570, 1624
Sau96I GGNCC 3 cut(s) 242, 1306, 1525
SchI GAGTC 3 cut(s) 553, 1419, 1640
ScrFI CCNGG 2 cut(s) 36, 358
SduI GDGCHC 2 cut(s) 1094, 1277
SexAI ACCWGGT 1 cut(s) 34
SfaNI GCATC 3 cut(s) 241, 589, 1540
SfcI CTRYAG 5 cut(s) 246, 712, 849, 960, 1491
SinI GGWCC 1 cut(s) 1525
SmiMI CAYNNNNRTG 1 cut(s) 829
SmlI CTYRAG 5 cut(s) 548, 590, 725, 1463, 1628
SmoI CTYRAG 5 cut(s) 548, 590, 725, 1463, 1628
SsiI CCGC 3 cut(s) 83, 285, 1309
SspMI CTAG 3 cut(s) 288, 705, 1112
SstI GAGCTC 2 cut(s) 1094, 1277
StyD4I CCNGG 2 cut(s) 34, 356
StyI CCWWGG 1 cut(s) 1340
TaaI ACNGT 2 cut(s) 502, 713
TaiI ACGT 3 cut(s) 297, 388, 1223
TaqI TCGA 3 cut(s) 104, 449, 829
TatI WGTACW 1 cut(s) 369
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 7 cut(s) 307, 409, 453, 1586, 1598, 1637, 1643
TscAI CASTG 1 cut(s) 1551
TseFI GTSAC 3 cut(s) 290, 381, 1033
TseI GCWGC 2 cut(s) 814, 887
Tsp45I GTSAC 3 cut(s) 290, 381, 1033
TspDTI ATGAA 8 cut(s) 189, 401, 1005, 1043, 1060, 1243, 1394, 1420
TspRI CASTG 1 cut(s) 1551
VpaK11BI GGWCC 1 cut(s) 1525
XapI RAATTY 3 cut(s) 933, 1076, 1159
XceI RCATGY 1 cut(s) 96
XmiI GTMKAC 2 cut(s) 1065, 1248
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 3 cut(s) 288, 705, 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.