Rh7CG189900

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003942
Physical Location & Seq
Reverse (-)
16744574 .. 16745950
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG189900.1

Sequence Viewer

Length: 1029 bp
ATGGTTACCATTACGCAAGACATGTTCGAAAAGATGATTGCTTGCTCCCCTCTGCTTGAGAAACTGATTTTATGTGACTTTGCTGGTATCAAAACTCTCAACATCGATGCACCAAAACTCCAATACCTTAAGGTCGAAGGTGCTTTTGAGGATGTTGACATTGGGGTGAATACCTTAAACCTTGTTCATGTGTCAATTGAACAACAAAAGGCAGCTTCTATCAGTTGTACCAATTTCTTCAAGTTCTTTTCTCAACTGACTCGTATTGAAAGTCTCTCAATTGATGGTTTTTTCCTACAGTCTTCTGTTGGTGCCTTGCAAGAGGAGCTGCTGAAACCATATCTATGTCTCAAGTCTATTTACTTAGGCATACGCTTGAATAATTTAGATGAGACTTTAGCTGCCGTACGCCTTCTGAGAAGCTCTCCGGTAAAAGAACTAGAAATTTCGGTTCGCCAAGAAGCCGAGGCTGCTGATGCTAATGTAGGAGACACAACTTTTTGGTTAAATGATAACCAGAAGTTCAGCCAACTGCGACTTGTGAAAGTAACCGGCTTCTCTGGTGTCAAAGCTGAAGTGGACTTCATTAAATTTCTGCTTTTACGTTCCCCTTCTCTTCAACAATTAGAAATTCTGGCTTGGCAACAAGATGGGGCTATTAGGAGAAAAGTGAGCTCTTGGTTAGGCGACAGCCAGAATTGGGCTTTCAACCAACTACGAGTTGTGAAATTAATTGACATTTCTGGTGTCAAAGCTGAATTAGCACTCATCAGATTTCTGCTTCTCAAATCACCTGTCCTTGAGAAGATGATTGTTCGGCCTCTTCACCTTACTGGCAATCGTGCTTTAATAAAGAAGCTGCTCCAGTTTAGGCGTGCGTCGGGGAAAGCAGAGATAAAGTACTTGGATCCATTAAAGCATGTGCATGCTAATGCTGGTTCAAATCAAAGGCAAGCTAATGCTCATGCCGATTCTGAGTCTGACTTTAGCTCGTCGTCTGACTCTAGCTCTTCATCCGACTCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

342

Amino Acids

38.18

Weight (kDa)

7.66

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 19 - 216 1.3e-08 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AclWI GGATC 2 cut(s) 902, 915
AcsI RAATTY 3 cut(s) 444, 590, 630
AcuI CTGAAG 1 cut(s) 594
AfaI GTAC 3 cut(s) 229, 408, 902
AfiI CCNNNNNNNGG 1 cut(s) 700
AflII CTTAAG 1 cut(s) 128
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 7 cut(s) 200, 241, 269, 379, 620, 709, 942
Alw21I GWGCWC 1 cut(s) 677
Alw26I GTCTC 4 cut(s) 278, 353, 386, 483
AlwI GGATC 2 cut(s) 902, 915
AoxI GGCC 1 cut(s) 818
ApeKI GCWGC 5 cut(s) 212, 328, 401, 470, 859
ApoI RAATTY 3 cut(s) 444, 590, 630
ArsI GACNNNNNNTTYG 2 cut(s) 780, 812
AseI ATTAAT 1 cut(s) 731
AsuHPI GGTGA 3 cut(s) 178, 783, 818
AsuII TTCGAA 1 cut(s) 27
BamHI GGATCC 1 cut(s) 907
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 677
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 677
BbvI GCAGC 5 cut(s) 224, 315, 388, 457, 846
BccI CCATC 2 cut(s) 278, 644
BceAI ACGGC 1 cut(s) 389
BcoDI GTCTC 4 cut(s) 278, 353, 386, 483
BfaI CTAG 2 cut(s) 440, 1005
BfmI CTRYAG 1 cut(s) 296
BfrI CTTAAG 1 cut(s) 128
BisI GCNGC 5 cut(s) 213, 329, 402, 471, 860
BlsI GCNGC 5 cut(s) 214, 330, 403, 472, 861
BmcAI AGTACT 1 cut(s) 902
BmiI GGNNCC 2 cut(s) 313, 909
BmsI GCATC 2 cut(s) 97, 466
BpiI GAAGAC 1 cut(s) 294
BplI GAGNNNNNCTC 2 cut(s) 409, 441
BpmI CTGGAG 1 cut(s) 848
Bpu14I TTCGAA 1 cut(s) 27
BpuEI CTTGAG 3 cut(s) 77, 335, 821
Bsa29I ATCGAT 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 465
BsaWI WCCGGW 1 cut(s) 427
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 700
Bse118I RCCGGY 1 cut(s) 551
Bse1I ACTGG 2 cut(s) 838, 865
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 157, 1013
BseLI CCNNNNNNNGG 1 cut(s) 700
BseMII CTCAG 2 cut(s) 407, 966
BseNI ACTGG 2 cut(s) 838, 865
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 5 cut(s) 224, 315, 388, 457, 846
BshFI GGCC 1 cut(s) 820
BshNI GGYRCC 1 cut(s) 311
BshVI ATCGAT 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 677
BsiSI CCGG 2 cut(s) 428, 552
BsiWI CGTACG 1 cut(s) 406
BslI CCNNNNNNNGG 1 cut(s) 700
BsmAI GTCTC 4 cut(s) 278, 353, 386, 483
BsnI GGCC 1 cut(s) 820
Bsp119I TTCGAA 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 677
Bsp143I GATC 1 cut(s) 907
BspANI GGCC 1 cut(s) 820
BspCNI CTCAG 2 cut(s) 408, 967
BspDI ATCGAT 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 313, 909
BspPI GGATC 2 cut(s) 902, 915
BspQI GCTCTTC 1 cut(s) 1015
BspT104I TTCGAA 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 311
BspTI CTTAAG 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 551
BsrI ACTGG 2 cut(s) 838, 865
BssAI RCCGGY 1 cut(s) 551
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 1 cut(s) 907
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 3 cut(s) 621, 828, 1015
BstAFI CTTAAG 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 4 cut(s) 43, 876, 927, 954
BstDEI CTNAG 3 cut(s) 364, 416, 975
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 2 cut(s) 157, 1013
BstKTI GATC 1 cut(s) 910
BstMAI GTCTC 4 cut(s) 278, 353, 386, 483
BstMBI GATC 1 cut(s) 907
BstMWI GCNNNNNNNGC 4 cut(s) 325, 470, 476, 761
BstNSI RCATGY 3 cut(s) 25, 923, 929
BstPI GGTNACC 1 cut(s) 4
BstSFI CTRYAG 1 cut(s) 296
BstV1I GCAGC 5 cut(s) 224, 315, 388, 457, 846
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 907
BstYI RGATCY 1 cut(s) 907
Bsu15I ATCGAT 1 cut(s) 105
BsuRI GGCC 1 cut(s) 820
BsuTUI ATCGAT 1 cut(s) 105
BtsCI GGATG 2 cut(s) 157, 1013
Cac8I GCNNGC 4 cut(s) 43, 876, 927, 954
Cfr10I RCCGGY 1 cut(s) 551
ClaI ATCGAT 1 cut(s) 105
CseI GACGC 1 cut(s) 867
Csp6I GTAC 3 cut(s) 228, 407, 901
CviAII CATG 5 cut(s) 22, 188, 920, 926, 965
CviQI GTAC 3 cut(s) 228, 407, 901
DdeI CTNAG 3 cut(s) 364, 416, 975
DpnI GATC 1 cut(s) 909
DpnII GATC 1 cut(s) 907
Eam1104I CTCTTC 3 cut(s) 621, 828, 1015
EarI CTCTTC 3 cut(s) 621, 828, 1015
Ecl136II GAGCTC 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 677
Eco53kI GAGCTC 1 cut(s) 675
Eco57I CTGAAG 1 cut(s) 594
Eco91I GGTNACC 1 cut(s) 4
EcoICRI GAGCTC 1 cut(s) 675
EcoO65I GGTNACC 1 cut(s) 4
EcoT38I GRGCYC 1 cut(s) 677
FaeI CATG 5 cut(s) 25, 191, 923, 929, 968
FaiI YATR 9 cut(s) 23, 73, 189, 340, 346, 371, 921, 927, 966
FatI CATG 5 cut(s) 21, 187, 919, 925, 964
Fnu4HI GCNGC 5 cut(s) 213, 329, 402, 471, 860
FokI GGATG 2 cut(s) 164, 1000
FriOI GRGCYC 1 cut(s) 677
Fsp4HI GCNGC 5 cut(s) 213, 329, 402, 471, 860
FspBI CTAG 2 cut(s) 440, 1005
GluI GCNGC 5 cut(s) 213, 329, 402, 471, 860
GsuI CTGGAG 1 cut(s) 848
HaeIII GGCC 1 cut(s) 820
HapII CCGG 2 cut(s) 428, 552
HgaI GACGC 1 cut(s) 867
Hin1II CATG 5 cut(s) 25, 191, 923, 929, 968
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 5 cut(s) 259, 971, 977, 1001, 1019
HpaII CCGG 2 cut(s) 428, 552
HphI GGTGA 3 cut(s) 178, 783, 818
Hpy166II GTNNAC 2 cut(s) 157, 580
Hpy188I TCNGA 7 cut(s) 417, 773, 976, 982, 1000, 1018, 1024
Hpy8I GTNNAC 2 cut(s) 157, 580
Hpy99I CGWCG 2 cut(s) 883, 997
HpyAV CCTTC 3 cut(s) 131, 422, 621
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 3 cut(s) 110, 319, 925
HpyF10VI GCNNNNNNNGC 4 cut(s) 325, 470, 476, 761
HpyF3I CTNAG 3 cut(s) 364, 416, 975
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 5 cut(s) 25, 191, 923, 929, 968
Kzo9I GATC 1 cut(s) 907
LguI GCTCTTC 1 cut(s) 1015
LmnI GCTCC 3 cut(s) 50, 325, 867
Lsp1109I GCAGC 5 cut(s) 224, 315, 388, 457, 846
LweI GCATC 2 cut(s) 97, 466
MaeI CTAG 2 cut(s) 440, 1005
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 3 cut(s) 4, 74, 547
MalI GATC 1 cut(s) 909
MboI GATC 1 cut(s) 907
MboII GAAGA 6 cut(s) 229, 294, 608, 815, 817, 1002
MfeI CAATTG 2 cut(s) 195, 279
MflI RGATCY 1 cut(s) 907
MhlI GDGCHC 1 cut(s) 677
MlyI GAGTC 4 cut(s) 253, 986, 995, 1013
MnlI CCTC 5 cut(s) 60, 142, 316, 460, 831
MseI TTAA 7 cut(s) 129, 176, 506, 588, 731, 848, 914
MslI CAYNNNNRTG 4 cut(s) 164, 343, 924, 930
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 2 cut(s) 428, 552
MunI CAATTG 2 cut(s) 195, 279
MwoI GCNNNNNNNGC 4 cut(s) 325, 470, 476, 761
NdeII GATC 1 cut(s) 907
NlaIII CATG 5 cut(s) 25, 191, 923, 929, 968
NlaIV GGNNCC 2 cut(s) 313, 909
NmeAIII GCCGAG 1 cut(s) 490
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 3 cut(s) 25, 923, 929
NspV TTCGAA 1 cut(s) 27
PaeI GCATGC 1 cut(s) 929
PciI ACATGT 1 cut(s) 21
PciSI GCTCTTC 1 cut(s) 1015
PfeI GAWTC 1 cut(s) 971
Pfl23II CGTACG 1 cut(s) 406
PkrI GCNGC 5 cut(s) 214, 330, 403, 472, 861
PleI GAGTC 4 cut(s) 253, 985, 995, 1013
PpsI GAGTC 4 cut(s) 253, 985, 995, 1013
PscI ACATGT 1 cut(s) 21
PshBI ATTAAT 1 cut(s) 731
Psp124BI GAGCTC 1 cut(s) 677
PspEI GGTNACC 1 cut(s) 4
PspLI CGTACG 1 cut(s) 406
PspN4I GGNNCC 2 cut(s) 313, 909
PsuI RGATCY 1 cut(s) 907
RsaI GTAC 3 cut(s) 229, 408, 902
RsaNI GTAC 3 cut(s) 228, 407, 901
RseI CAYNNNNRTG 4 cut(s) 164, 343, 924, 930
SacI GAGCTC 1 cut(s) 677
SapI GCTCTTC 1 cut(s) 1015
SaqAI TTAA 7 cut(s) 129, 176, 506, 588, 731, 848, 914
SatI GCNGC 5 cut(s) 213, 329, 402, 471, 860
Sau3AI GATC 1 cut(s) 907
ScaI AGTACT 1 cut(s) 902
SchI GAGTC 4 cut(s) 253, 986, 995, 1013
SduI GDGCHC 1 cut(s) 677
SfaNI GCATC 2 cut(s) 97, 466
SfcI CTRYAG 1 cut(s) 296
SfuI TTCGAA 1 cut(s) 27
SmiMI CAYNNNNRTG 4 cut(s) 164, 343, 924, 930
SmlI CTYRAG 4 cut(s) 56, 128, 350, 800
SmoI CTYRAG 4 cut(s) 56, 128, 350, 800
SphI GCATGC 1 cut(s) 929
SspMI CTAG 2 cut(s) 440, 1005
SstI GAGCTC 1 cut(s) 677
TaaI ACNGT 1 cut(s) 300
TaiI ACGT 1 cut(s) 607
TaqI TCGA 3 cut(s) 27, 105, 135
TatI WGTACW 1 cut(s) 900
TfiI GAWTC 1 cut(s) 971
Tru1I TTAA 7 cut(s) 129, 176, 506, 588, 731, 848, 914
Tru9I TTAA 7 cut(s) 129, 176, 506, 588, 731, 848, 914
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 5 cut(s) 212, 328, 401, 470, 859
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 3 cut(s) 176, 574, 1002
Vha464I CTTAAG 1 cut(s) 128
VspI ATTAAT 1 cut(s) 731
XapI RAATTY 3 cut(s) 444, 590, 630
XceI RCATGY 3 cut(s) 25, 923, 929
XspI CTAG 2 cut(s) 440, 1005
ZrmI AGTACT 1 cut(s) 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.