Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003942

Physical Location & Seq

Genomic Coordinates Reverse (-)

60989724 .. 60991704

Gene Structure 1981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0491900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGGGAAACAATTGAGTTGGGGTGGCCTGATCAGATTGAGGGGGATGGTAATTATTCTGGGAGTTGCTCTAATTGGATATTTTGGGGTACTTGGGGAGGGTAACATGTTCTCTAAACAGAAGGTTTTGGAAGTTGAAAGAAAATTAAGCCAACTTAGAAAACCTGCAGTTAAAAGCATTCAGAGTGAAGATGGTGATATCATTGATTGCATTGACATTTACAAGCAGCCAGCTCTTGATCATCCTGCTCTCAAAAACCACACCATCCAGATGGCACCTAGTTATGATCCAACAAAGGAGACAGAGTCGACAATGACCAAATTAGAAAGATTAGAGAGGAAGAGGAACCAACAAGCTTCCATGATGGTGACACAACCATGGAAGAAAAATGGAAGCTGTCCACAAGGAACAATCCCGGTGCGAAGAATCAGAAAAGAGGACCTGCTCCGAGCTAGCTCGGTTGAGGCCTATGGAAGGAAGAAACATAGCTCTTCTCGTCCTCATGTTTCGCATGAGTCTAGTACTAGTGACAGCAACAGAACTGTGAACGTTCTACAAGCAAATCACTCGAAGGCAATATTGCTCACCGAAGGATACAGGTACAATGGAGCCAAAGGAGATATCAAAGTTTGGACTCCTAATGTTGATTTTGACGATGATTACACTACTTCTAAAGTTTGCCTCATCAATGGTCCTTATTGGGCATTTGAGAGTGTTGAATCTGGATGGGCGGTGAATCCGAGTGTGTACGGAGACAGGCAAACTCGATTTATGGTGTATTGGACGGTCGATGGTTCAAAGAAAACAGGTTGCTTTGATCTCACTTGTCCTGGATTTGTTCAAACTAGCCATGAGATTGCTCTCGGTGCTGCAATTTACCCAATCTCTGTTCCTTATGGCCTTCCGTACGAAATCATCGTCTATGTCTTCAAGGACCCCGTAACAAGCAATTGGTGGGTGCAATACGGGGAGAAAATCAACATCGGATACTGGCCACCGGAGCTGTTTATGGCGTTGCGTGTCCACGCAGAAGCAGTTGAGTGGGGAGGTGAAGTGTATAGTGCAAGAGTGGGTACTAATCCACACACAAAAACAGGAATGGGTAATGGAAACTTTCCTGATGGCATTTTTGGGGATTCAGGGGTCATTAAAAGAATCAGAATTCATGACAATTCAGCTGAACTCAAATTCCCGGAATGGGTTGAGACTTATGCGGACGAGTTCAACTGTTATGATGTTGATTATGTTTCCGATTACCTTGAAGATCCTGAGTTCTATTATGGAGGGCCTGGCCATAATCCCAAGTGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

437

Amino Acids

49.24

Weight (kDa)

6.43

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	59 - 173	8e-40	Neprosin activation peptide
Neprosin	PF03080	219 - 430	2.5e-66	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25150 FvH4_5g01320 FvH4_5g01330 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560
rosa_chinensis	RchiOBHm_Chr5g0049261 RchiOBHm_Chr7g0188631 RchiOBHm_Chr7g0199601
rosa_laevigata	RLG00000003784 RLG00000004676 RLG00000034607
rosa_multiflora	Rmu_co8228169.1_g000001 Rmu_sc0005358.1_g000008 Rmu_sc0009191.1_g000012 Rmu_sc0018006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032400 Rroxscaffold_3G00256570 Rroxscaffold_3G00256590 Rroxscaffold_3G00266180
rosa_rugosa	Rorug05G0246700 Rorug06G0491900 Rorug07G0055400
rosa_samantha	Rh5BG334700 Rh5DG346800 Rh7CG099700 Rh7CG189900 Rh7CG190000 Rh7DG098800
rosa_wichuraiana	Rw7G008360 Rw7G015840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	172, 450
AccB1I	GGYRCC	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	308
AciI	CCGC	2 cut(s)	731, 1214
AclI	AACGTT	1 cut(s)	549
AclWI	GGATC	2 cut(s)	281, 1259
AcoI	YGGCCR	2 cut(s)	992, 1291
AcsI	RAATTY	2 cut(s)	1161, 1187
AfaI	GTAC	6 cut(s)	90, 523, 602, 749, 908, 1075
AfiI	CCNNNNNNNGG	2 cut(s)	474, 1198
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	7 cut(s)	137, 719, 798, 842, 931, 1225, 1262
AhlI	ACTAGT	1 cut(s)	524
AjnI	CCWGG	2 cut(s)	829, 1288
AloI	GAACNNNNNNTCC	2 cut(s)	1173, 1205
AluBI	AGCT	8 cut(s)	233, 356, 396, 452, 456, 489, 1003, 1178
AluI	AGCT	8 cut(s)	233, 356, 396, 452, 456, 489, 1003, 1178
Alw26I	GTCTC	3 cut(s)	293, 747, 1199
AlwI	GGATC	2 cut(s)	281, 1259
AoxI	GGCC	6 cut(s)	25, 465, 898, 992, 1286, 1291
ApeKI	GCWGC	2 cut(s)	226, 869
ApoI	RAATTY	2 cut(s)	1161, 1187
ArsI	GACNNNNNNTTYG	2 cut(s)	903, 935
AspS9I	GGNCC	4 cut(s)	439, 692, 934, 1286
AsuC2I	CCSGG	2 cut(s)	416, 1193
AsuHPI	GGTGA	5 cut(s)	206, 379, 577, 745, 1061
AsuNHI	GCTAGC	1 cut(s)	452
AvaII	GGWCC	3 cut(s)	439, 692, 934
BaeGI	GKGCMC	1 cut(s)	1310
BalI	TGGCCA	2 cut(s)	994, 1293
BanI	GGYRCC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	919
BbvI	GCAGC	2 cut(s)	238, 856
BccI	CCATC	8 cut(s)	40, 185, 265, 272, 358, 720, 785, 1115
BcgI	CGANNNNNNTGC	2 cut(s)	549, 583
BciT130I	CCWGG	2 cut(s)	831, 1290
BciVI	GTATCC	2 cut(s)	587, 980
BclI	TGATCA	2 cut(s)	30, 238
BcnI	CCSGG	2 cut(s)	416, 1193
BcoDI	GTCTC	3 cut(s)	293, 747, 1199
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	5 cut(s)	279, 453, 519, 525, 846
BfmI	CTRYAG	1 cut(s)	165
BfuAI	ACCTGC	2 cut(s)	172, 450
BfuI	GTATCC	2 cut(s)	587, 980
BisI	GCNGC	2 cut(s)	227, 870
BlsI	GCNGC	2 cut(s)	228, 871
BmcAI	AGTACT	1 cut(s)	523
Bme1390I	CCNGG	4 cut(s)	416, 831, 1193, 1290
Bme18I	GGWCC	3 cut(s)	439, 692, 934
BmgT120I	GGNCC	4 cut(s)	439, 692, 934, 1286
BmiI	GGNNCC	4 cut(s)	276, 347, 610, 936
BmrFI	CCNGG	4 cut(s)	416, 831, 1193, 1290
BmtI	GCTAGC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	919
BpuMI	CCSGG	2 cut(s)	416, 1193
BsaJI	CCNNGG	1 cut(s)	377
BsaWI	WCCGGW	1 cut(s)	997
BsaXI	ACNNNNNCTCC	4 cut(s)	290, 320, 1038, 1068
Bsc4I	CCNNNNNNNGG	2 cut(s)	474, 1198
Bse1I	ACTGG	1 cut(s)	995
BseBI	CCWGG	2 cut(s)	831, 1290
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	4 cut(s)	51, 241, 264, 731
BseLI	CCNNNNNNNGG	2 cut(s)	474, 1198
BseMII	CTCAG	1 cut(s)	1260
BseNI	ACTGG	1 cut(s)	995
BseSI	GKGCMC	1 cut(s)	1310
BseXI	GCAGC	2 cut(s)	238, 856
Bsh1285I	CGRYCG	1 cut(s)	789
BshFI	GGCC	6 cut(s)	27, 467, 900, 994, 1288, 1293
BshNI	GGYRCC	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	789
BsiSI	CCGG	3 cut(s)	416, 998, 1193
BsiWI	CGTACG	1 cut(s)	906
BslI	CCNNNNNNNGG	2 cut(s)	474, 1198
BsmAI	GTCTC	3 cut(s)	293, 747, 1199
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	6 cut(s)	27, 467, 900, 994, 1288, 1293
Bsp1286I	GDGCHC	1 cut(s)	1310
Bsp143I	GATC	5 cut(s)	30, 238, 286, 817, 1264
Bsp19I	CCATGG	1 cut(s)	377
BspACI	CCGC	2 cut(s)	731, 1214
BspANI	GGCC	6 cut(s)	27, 467, 900, 994, 1288, 1293
BspCNI	CTCAG	1 cut(s)	1261
BspHI	TCATGA	1 cut(s)	1165
BspLI	GGNNCC	4 cut(s)	276, 347, 610, 936
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	2 cut(s)	172, 450
BspOI	GCTAGC	1 cut(s)	456
BspPI	GGATC	2 cut(s)	281, 1259
BspQI	GCTCTTC	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	995
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	5 cut(s)	30, 238, 286, 817, 1264
BssT1I	CCWWGG	1 cut(s)	377
Bst2UI	CCWGG	2 cut(s)	831, 1290
Bst4CI	ACNGT	3 cut(s)	544, 787, 1229
Bst6I	CTCTTC	2 cut(s)	335, 496
BstC8I	GCNNGC	2 cut(s)	231, 454
BstDEI	CTNAG	2 cut(s)	155, 1269
BstDSI	CCRYGG	1 cut(s)	377
BstENI	CCTNNNNNAGG	1 cut(s)	472
BstF5I	GGATG	4 cut(s)	51, 241, 264, 731
BstKTI	GATC	5 cut(s)	33, 241, 289, 820, 1267
BstMAI	GTCTC	3 cut(s)	293, 747, 1199
BstMBI	GATC	5 cut(s)	30, 238, 286, 817, 1264
BstMCI	CGRYCG	1 cut(s)	789
BstMWI	GCNNNNNNNGC	2 cut(s)	866, 1000
BstNI	CCWGG	2 cut(s)	831, 1290
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	4 cut(s)	414, 829, 1191, 1288
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	1310
BstV1I	GCAGC	2 cut(s)	238, 856
BstV2I	GAAGAC	1 cut(s)	919
BstX2I	RGATCY	1 cut(s)	1264
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	1264
BsuI	GTATCC	2 cut(s)	587, 980
BsuRI	GGCC	6 cut(s)	27, 467, 900, 994, 1288, 1293
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	4 cut(s)	51, 241, 264, 731
BveI	ACCTGC	2 cut(s)	172, 450
Cac8I	GCNNGC	2 cut(s)	231, 454
CciI	TCATGA	1 cut(s)	1165
Cfr13I	GGNCC	4 cut(s)	439, 692, 934, 1286
Csp6I	GTAC	6 cut(s)	89, 522, 601, 748, 907, 1074
CviAII	CATG	7 cut(s)	106, 361, 378, 503, 512, 851, 1166
CviQI	GTAC	6 cut(s)	89, 522, 601, 748, 907, 1074
DdeI	CTNAG	2 cut(s)	155, 1269
DpnI	GATC	5 cut(s)	32, 240, 288, 819, 1266
DpnII	GATC	5 cut(s)	30, 238, 286, 817, 1264
EaeI	YGGCCR	2 cut(s)	992, 1291
Eam1104I	CTCTTC	2 cut(s)	335, 496
EarI	CTCTTC	2 cut(s)	335, 496
Eco130I	CCWWGG	1 cut(s)	377
Eco147I	AGGCCT	1 cut(s)	467
Eco32I	GATATC	2 cut(s)	199, 622
Eco47I	GGWCC	3 cut(s)	439, 692, 934
EcoNI	CCTNNNNNAGG	1 cut(s)	472
EcoO109I	RGGNCCY	3 cut(s)	439, 934, 1286
EcoRI	GAATTC	1 cut(s)	1161
EcoRII	CCWGG	2 cut(s)	829, 1288
EcoRV	GATATC	2 cut(s)	199, 622
EcoT14I	CCWWGG	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	7 cut(s)	109, 364, 381, 506, 515, 854, 1169
FatI	CATG	7 cut(s)	105, 360, 377, 502, 511, 850, 1165
FbaI	TGATCA	2 cut(s)	30, 238
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	227, 870
FokI	GGATG	4 cut(s)	58, 228, 251, 738
Fsp4HI	GCNGC	2 cut(s)	227, 870
FspBI	CTAG	5 cut(s)	279, 453, 519, 525, 846
GluI	GCNGC	2 cut(s)	227, 870
HaeIII	GGCC	6 cut(s)	27, 467, 900, 994, 1288, 1293
HapII	CCGG	3 cut(s)	416, 998, 1193
Hin1II	CATG	7 cut(s)	109, 364, 381, 506, 515, 854, 1169
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	8 cut(s)	305, 426, 515, 634, 719, 736, 1136, 1155
HpaII	CCGG	3 cut(s)	416, 998, 1193
HphI	GGTGA	5 cut(s)	206, 379, 577, 745, 1061
Hpy166II	GTNNAC	5 cut(s)	309, 401, 547, 748, 1024
Hpy188I	TCNGA	8 cut(s)	35, 183, 431, 449, 741, 986, 1160, 1252
Hpy188III	TCNNGA	6 cut(s)	236, 268, 723, 1118, 1166, 1268
Hpy8I	GTNNAC	5 cut(s)	309, 401, 547, 748, 1024
HpyAV	CCTTC	5 cut(s)	115, 468, 565, 584, 911
HpyCH4III	ACNGT	3 cut(s)	544, 787, 1229
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	5 cut(s)	167, 210, 872, 961, 1064
HpyF10VI	GCNNNNNNNGC	2 cut(s)	866, 1000
HpyF3I	CTNAG	2 cut(s)	155, 1269
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	7 cut(s)	109, 364, 381, 506, 515, 854, 1169
Ksp22I	TGATCA	2 cut(s)	30, 238
Kzo9I	GATC	5 cut(s)	30, 238, 286, 817, 1264
LguI	GCTCTTC	1 cut(s)	496
LmnI	GCTCC	3 cut(s)	450, 608, 1000
Lsp1109I	GCAGC	2 cut(s)	238, 856
MaeI	CTAG	5 cut(s)	279, 453, 519, 525, 846
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	4 cut(s)	101, 367, 527, 940
MalI	GATC	5 cut(s)	32, 240, 288, 819, 1266
MboI	GATC	5 cut(s)	30, 238, 286, 817, 1264
MboII	GAAGA	8 cut(s)	200, 352, 394, 435, 483, 490, 919, 1274
MfeI	CAATTG	2 cut(s)	11, 949
MflI	RGATCY	1 cut(s)	1264
MhlI	GDGCHC	1 cut(s)	1310
MlsI	TGGCCA	2 cut(s)	994, 1293
MluNI	TGGCCA	2 cut(s)	994, 1293
MlyI	GAGTC	3 cut(s)	314, 524, 628
MmeI	TCCRAC	1 cut(s)	314
Mox20I	TGGCCA	2 cut(s)	994, 1293
MscI	TGGCCA	2 cut(s)	994, 1293
MseI	TTAA	4 cut(s)	146, 171, 1149, 1312
MslI	CAYNNNNRTG	3 cut(s)	269, 365, 376
Msp20I	TGGCCA	2 cut(s)	994, 1293
MspA1I	CMGCKG	1 cut(s)	1178
MspI	CCGG	3 cut(s)	416, 998, 1193
MspR9I	CCNGG	4 cut(s)	416, 831, 1193, 1290
MunI	CAATTG	2 cut(s)	11, 949
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	2 cut(s)	831, 1290
MwoI	GCNNNNNNNGC	2 cut(s)	866, 1000
NciI	CCSGG	2 cut(s)	416, 1193
NcoI	CCATGG	1 cut(s)	377
NdeII	GATC	5 cut(s)	30, 238, 286, 817, 1264
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	7 cut(s)	109, 364, 381, 506, 515, 854, 1169
NlaIV	GGNNCC	4 cut(s)	276, 347, 610, 936
NmuCI	GTSAC	2 cut(s)	367, 527
NspI	RCATGY	1 cut(s)	109
PagI	TCATGA	1 cut(s)	1165
PceI	AGGCCT	1 cut(s)	467
PciI	ACATGT	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	915
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	5 cut(s)	426, 719, 736, 1136, 1155
Pfl23II	CGTACG	1 cut(s)	906
PflFI	GACNNNGTC	1 cut(s)	304
PfoI	TCCNGGA	2 cut(s)	829, 1191
PkrI	GCNGC	2 cut(s)	228, 871
PleI	GAGTC	3 cut(s)	313, 523, 628
PpsI	GAGTC	3 cut(s)	313, 523, 628
PpuMI	RGGWCCY	2 cut(s)	439, 934
PscI	ACATGT	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	549
Psp5II	RGGWCCY	2 cut(s)	439, 934
Psp6I	CCWGG	2 cut(s)	829, 1288
PspGI	CCWGG	2 cut(s)	829, 1288
PspLI	CGTACG	1 cut(s)	906
PspN4I	GGNNCC	4 cut(s)	276, 347, 610, 936
PspPI	GGNCC	4 cut(s)	439, 692, 934, 1286
PspPPI	RGGWCCY	2 cut(s)	439, 934
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	1264
PsyI	GACNNNGTC	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	1178
RsaI	GTAC	6 cut(s)	90, 523, 602, 749, 908, 1075
RsaNI	GTAC	6 cut(s)	89, 522, 601, 748, 907, 1074
RseI	CAYNNNNRTG	3 cut(s)	269, 365, 376
SalI	GTCGAC	1 cut(s)	307
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	4 cut(s)	146, 171, 1149, 1312
SatI	GCNGC	2 cut(s)	227, 870
Sau3AI	GATC	5 cut(s)	30, 238, 286, 817, 1264
Sau96I	GGNCC	4 cut(s)	439, 692, 934, 1286
ScaI	AGTACT	1 cut(s)	523
SchI	GAGTC	3 cut(s)	314, 524, 628
ScrFI	CCNGG	4 cut(s)	416, 831, 1193, 1290
SduI	GDGCHC	1 cut(s)	1310
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	3 cut(s)	439, 692, 934
SmiMI	CAYNNNNRTG	3 cut(s)	269, 365, 376
SpeI	ACTAGT	1 cut(s)	524
SseBI	AGGCCT	1 cut(s)	467
SsiI	CCGC	2 cut(s)	731, 1214
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	5 cut(s)	279, 453, 519, 525, 846
StuI	AGGCCT	1 cut(s)	467
StyD4I	CCNGG	4 cut(s)	414, 829, 1191, 1288
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	3 cut(s)	544, 787, 1229
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	4 cut(s)	308, 569, 766, 789
TatI	WGTACW	1 cut(s)	521
TfiI	GAWTC	5 cut(s)	426, 719, 736, 1136, 1155
Tru1I	TTAA	4 cut(s)	146, 171, 1149, 1312
Tru9I	TTAA	4 cut(s)	146, 171, 1149, 1312
TseFI	GTSAC	2 cut(s)	367, 527
TseI	GCWGC	2 cut(s)	226, 869
Tsp45I	GTSAC	2 cut(s)	367, 527
TspDTI	ATGAA	1 cut(s)	1154
TspGWI	ACGGA	2 cut(s)	765, 894
Tth111I	GACNNNGTC	1 cut(s)	304
VpaK11BI	GGWCC	3 cut(s)	439, 692, 934
XagI	CCTNNNNNAGG	1 cut(s)	472
XapI	RAATTY	2 cut(s)	1161, 1187
XceI	RCATGY	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	308
XspI	CTAG	5 cut(s)	279, 453, 519, 525, 846
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.