RLG00000003784

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
52668865 .. 52670804
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003784

Sequence Viewer

Length: 1593 bp
ATGCAGACAGAGCCGCCACCAATCTTTTTAAAGAAGAAACAGAGGACGAAGCTGGACAGAATAAGCAACTTAGAAGACGATGTTATACAACAAATCTTGTCATGTTTGCCGATCAGGGACGCAGTGAGGACAAGAATTTTATCGCGTACCTGGAAGTCCAACTGTGCTAATCTTCCATGTCTTGTATTTGATGATCGGTGTTGTCTCTCGGATCAAACCGGCACCAAGAGGAAGAGGGAAACCACATTTGAGAACATTGTTGATTATGTTCTAGTATCTCAAATTGGCTCCATACACACCTTCAAGATTTCTTGTCGAAATAAGCCTCTAGCTGCTGCGGATATCGATAGATGGATTTATCGTCTATCAAAATCCTCTTTGAAGAAGTGCACACTGGAGCTGTGGAGGGGTCCTCCTTACAATGTCTCTTCGAGTTTGTTTTTGTGTCAGGATTTGATTCATTTAGAGTTACATAATTGTCTGCTTAAACCCCCGTCGACCTTCAAAGGCTTCTGGAAATTGAAGACCTTAAATATCCAAATGGTTACCATTACGCAAGACATGTTCGAAAAGATGATTGCTTGCTCCCCTCTGCTTGAGAAACTGATTTTATGTGACTTTGCTGGTATCAAAACTCTCAACATCGATGCACCAAAACTCCAATACCTTAAGGTCGAAGGTGCTTTTGAGGATGTTGACATTGGGGTGAATACCTTAAACCAGCTTGTTCATGTGTCAATTGAACAACAAAAGGCAGCTTCTATCAGTTGTACCAATTTCTTCAAGTTCTTTTCTCAACTGACTCGTATCGAAAGTCTCTCAATTGATGGTTTTTTCCTAGAGTCTTCTGTTGGTGCCTTGCAAGAGGAGCTGCTGAAACCGTATCTATGTCTCAAGTCTCTTTGCTTAGGCATACGATTGAATAATTTAGATGAGACTTTAGCTGCTGTACGCCTTCTGAGAAGCTCTCCGGCCCTAAAAGAACTAGAAATTTCGGTTCGCCAAGAAGCCGAGGCTGCTGATGCTAATGCAGGAGACACAACTTTTTTGTTAAATGATAACCAGAAGTTCAGCCAACTGCGACTAGTAAAAGTAACCGGCTTCTCTGGTGTCAAAGCTGAAGTGGACTTCATTAAATTTCTGCTTTTACGCTCCCCTTCTCTTCAACAATTAGAAATTGTGGCTTGGCAACAAGATGGGGCTATTAGGAGAAAAGTGAGCTCTTGGTTAGGCAACAGCCAGAATTGCGCATTCAACCAACTACGAGTTGTGAAATTAATTGACATTTCTGGTGTCAAAGCTGAATTAGCACTCATCAGATTTCTGCTTTTCAAATCACCTGTTCTTGAGAAGATGATTGTTCGGCCTCTTCACCTTACTGGCAATCGTGCTTTAATAAAGAAGCTGCTCCGGTTTAGGCGTGAGTCGGGGAAAGCAGAGATAAAATACTTGGATCCATTAAAGCATGTGCATGCTAATGCTGGTTCAAATCAATGGCAAGCTAATGCTCATGCCGATTCTGAGTCTGACTCCAGCTCGTCGTCTGACTCTAGCTCGTCATCTGACTCTAGCTCTTCATCTGACTCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

531

Amino Acids

59.64

Weight (kDa)

8.9

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 21 - 59 2.5e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 100 - 403 2.1e-17 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 116 - 331 6.7e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1249
AccB1I GGYRCC 2 cut(s) 221, 854
AccI GTMKAC 1 cut(s) 497
AccII CGCG 1 cut(s) 145
AciI CCGC 2 cut(s) 14, 338
AclWI GGATC 3 cut(s) 219, 1448, 1461
AcsI RAATTY 3 cut(s) 135, 990, 1136
AcuI CTGAAG 1 cut(s) 1140
AfaI GTAC 3 cut(s) 148, 772, 951
AflII CTTAAG 1 cut(s) 668
AflIII ACRYGT 1 cut(s) 561
AhlI ACTAGT 1 cut(s) 1084
AjnI CCWGG 1 cut(s) 149
Alw21I GWGCWC 2 cut(s) 392, 1223
Alw26I GTCTC 7 cut(s) 209, 430, 821, 896, 903, 929, 1029
Alw44I GTGCAC 1 cut(s) 388
AlwI GGATC 3 cut(s) 219, 1448, 1461
AoxI GGCC 2 cut(s) 972, 1364
ApaLI GTGCAC 1 cut(s) 388
ApeKI GCWGC 7 cut(s) 332, 335, 755, 871, 944, 1016, 1405
ApoI RAATTY 3 cut(s) 135, 990, 1136
AseI ATTAAT 1 cut(s) 1277
AspLEI GCGC 1 cut(s) 1250
AspS9I GGNCC 2 cut(s) 410, 973
AsuHPI GGTGA 3 cut(s) 718, 1329, 1364
AsuII TTCGAA 1 cut(s) 567
AvaII GGWCC 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 392
BamHI GGATCC 1 cut(s) 1453
BanI GGYRCC 2 cut(s) 221, 854
BanII GRGCYC 1 cut(s) 1223
BbsI GAAGAC 3 cut(s) 81, 530, 837
Bbv12I GWGCWC 2 cut(s) 392, 1223
BbvI GCAGC 7 cut(s) 319, 322, 767, 858, 931, 1003, 1392
BccI CCATC 3 cut(s) 345, 821, 1190
BciT130I CCWGG 1 cut(s) 151
BcoDI GTCTC 7 cut(s) 209, 430, 821, 896, 903, 929, 1029
BcuI ACTAGT 1 cut(s) 1084
BfaI CTAG 7 cut(s) 272, 329, 839, 986, 1085, 1551, 1569
BfrI CTTAAG 1 cut(s) 668
BisI GCNGC 8 cut(s) 14, 333, 336, 756, 872, 945, 1017, 1406
BlsI GCNGC 8 cut(s) 15, 334, 337, 757, 873, 946, 1018, 1407
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 410, 973
BmiI GGNNCC 5 cut(s) 223, 289, 411, 856, 1455
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 2 cut(s) 637, 1012
BpiI GAAGAC 3 cut(s) 81, 530, 837
BplI GAGNNNNNCTC 6 cut(s) 397, 429, 952, 984, 1514, 1546
BpmI CTGGAG 2 cut(s) 416, 1516
Bpu10I CCTNAGC 1 cut(s) 907
Bpu14I TTCGAA 1 cut(s) 567
BpuEI CTTGAG 3 cut(s) 617, 878, 1367
Bsa29I ATCGAT 2 cut(s) 345, 645
BsaJI CCNNGG 1 cut(s) 1011
BsaWI WCCGGW 1 cut(s) 1410
BsaXI ACNNNNNCTCC 2 cut(s) 642, 672
Bse118I RCCGGY 2 cut(s) 218, 1097
Bse1I ACTGG 2 cut(s) 399, 1384
BseBI CCWGG 1 cut(s) 151
BseCI ATCGAT 2 cut(s) 345, 645
BseDI CCNNGG 1 cut(s) 1011
BseGI GGATG 1 cut(s) 697
BseMII CTCAG 2 cut(s) 950, 1512
BseNI ACTGG 2 cut(s) 399, 1384
BseRI GAGGAG 1 cut(s) 881
BseSI GKGCMC 1 cut(s) 392
BseXI GCAGC 7 cut(s) 319, 322, 767, 858, 931, 1003, 1392
Bsh1236I CGCG 1 cut(s) 145
BshFI GGCC 2 cut(s) 974, 1366
BshNI GGYRCC 2 cut(s) 221, 854
BshVI ATCGAT 2 cut(s) 345, 645
BsiHKAI GWGCWC 2 cut(s) 392, 1223
BsiSI CCGG 4 cut(s) 219, 971, 1098, 1411
BslFI GGGAC 1 cut(s) 131
BsmAI GTCTC 7 cut(s) 209, 430, 821, 896, 903, 929, 1029
BsmFI GGGAC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 1250
BsnI GGCC 2 cut(s) 974, 1366
Bsp119I TTCGAA 1 cut(s) 567
Bsp1286I GDGCHC 2 cut(s) 392, 1223
Bsp143I GATC 4 cut(s) 111, 193, 211, 1453
BspACI CCGC 2 cut(s) 14, 338
BspANI GGCC 2 cut(s) 974, 1366
BspCNI CTCAG 2 cut(s) 951, 1513
BspDI ATCGAT 2 cut(s) 345, 645
BspFNI CGCG 1 cut(s) 145
BspLI GGNNCC 5 cut(s) 223, 289, 411, 856, 1455
BspPI GGATC 3 cut(s) 219, 1448, 1461
BspQI GCTCTTC 1 cut(s) 1579
BspT104I TTCGAA 1 cut(s) 567
BspT107I GGYRCC 2 cut(s) 221, 854
BspTI CTTAAG 1 cut(s) 668
BsrFI RCCGGY 2 cut(s) 218, 1097
BsrI ACTGG 2 cut(s) 399, 1384
BssAI RCCGGY 2 cut(s) 218, 1097
BssECI CCNNGG 1 cut(s) 1011
BssMI GATC 4 cut(s) 111, 193, 211, 1453
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 164, 882
Bst6I CTCTTC 5 cut(s) 227, 433, 1167, 1374, 1579
BstAFI CTTAAG 1 cut(s) 668
BstBI TTCGAA 1 cut(s) 567
BstC8I GCNNGC 3 cut(s) 583, 1473, 1500
BstDEI CTNAG 4 cut(s) 70, 907, 959, 1521
BstEII GGTNACC 1 cut(s) 544
BstF5I GGATG 1 cut(s) 697
BstFNI CGCG 1 cut(s) 145
BstHHI GCGC 1 cut(s) 1250
BstKTI GATC 4 cut(s) 114, 196, 214, 1456
BstMAI GTCTC 7 cut(s) 209, 430, 821, 896, 903, 929, 1029
BstMBI GATC 4 cut(s) 111, 193, 211, 1453
BstMWI GCNNNNNNNGC 6 cut(s) 10, 868, 1016, 1022, 1245, 1307
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 3 cut(s) 565, 1469, 1475
BstPI GGTNACC 1 cut(s) 544
BstSCI CCNGG 1 cut(s) 149
BstSLI GKGCMC 1 cut(s) 392
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 7 cut(s) 319, 322, 767, 858, 931, 1003, 1392
BstV2I GAAGAC 3 cut(s) 81, 530, 837
BstX2I RGATCY 1 cut(s) 1453
BstYI RGATCY 1 cut(s) 1453
Bsu15I ATCGAT 2 cut(s) 345, 645
BsuRI GGCC 2 cut(s) 974, 1366
BsuTUI ATCGAT 2 cut(s) 345, 645
BtsCI GGATG 1 cut(s) 697
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 129, 392
Cac8I GCNNGC 3 cut(s) 583, 1473, 1500
CfoI GCGC 1 cut(s) 1250
Cfr10I RCCGGY 2 cut(s) 218, 1097
Cfr13I GGNCC 2 cut(s) 410, 973
ClaI ATCGAT 2 cut(s) 345, 645
CseI GACGC 1 cut(s) 128
Csp6I GTAC 3 cut(s) 147, 771, 950
CviAII CATG 7 cut(s) 102, 177, 562, 731, 1466, 1472, 1511
CviQI GTAC 3 cut(s) 147, 771, 950
DdeI CTNAG 4 cut(s) 70, 907, 959, 1521
DpnI GATC 4 cut(s) 113, 195, 213, 1455
DpnII GATC 4 cut(s) 111, 193, 211, 1453
DraI TTTAAA 1 cut(s) 30
Eam1104I CTCTTC 5 cut(s) 227, 433, 1167, 1374, 1579
EarI CTCTTC 5 cut(s) 227, 433, 1167, 1374, 1579
Ecl136II GAGCTC 1 cut(s) 1221
Eco24I GRGCYC 1 cut(s) 1223
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 410
Eco53kI GAGCTC 1 cut(s) 1221
Eco57I CTGAAG 1 cut(s) 1140
Eco91I GGTNACC 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 1221
EcoO109I RGGNCCY 1 cut(s) 410
EcoO65I GGTNACC 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 149
EcoRV GATATC 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 1223
FaeI CATG 7 cut(s) 105, 180, 565, 734, 1469, 1475, 1514
FaqI GGGAC 1 cut(s) 131
FatI CATG 7 cut(s) 101, 176, 561, 730, 1465, 1471, 1510
FblI GTMKAC 1 cut(s) 497
Fnu4HI GCNGC 8 cut(s) 14, 333, 336, 756, 872, 945, 1017, 1406
FokI GGATG 1 cut(s) 704
FriOI GRGCYC 1 cut(s) 1223
Fsp4HI GCNGC 8 cut(s) 14, 333, 336, 756, 872, 945, 1017, 1406
FspBI CTAG 7 cut(s) 272, 329, 839, 986, 1085, 1551, 1569
FspI TGCGCA 1 cut(s) 1249
GlaI GCGC 1 cut(s) 1249
GluI GCNGC 8 cut(s) 14, 333, 336, 756, 872, 945, 1017, 1406
GsuI CTGGAG 2 cut(s) 416, 1516
HaeIII GGCC 2 cut(s) 974, 1366
HapII CCGG 4 cut(s) 219, 971, 1098, 1411
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 1250
Hin1II CATG 7 cut(s) 105, 180, 565, 734, 1469, 1475, 1514
Hin6I GCGC 1 cut(s) 1248
HinP1I GCGC 1 cut(s) 1248
HincII GTYRAC 2 cut(s) 498, 697
HindII GTYRAC 2 cut(s) 498, 697
HpaII CCGG 4 cut(s) 219, 971, 1098, 1411
HphI GGTGA 3 cut(s) 718, 1329, 1364
Hpy166II GTNNAC 4 cut(s) 390, 498, 697, 1126
Hpy188I TCNGA 9 cut(s) 211, 960, 1319, 1522, 1528, 1546, 1564, 1582, 1588
Hpy188III TCNNGA 4 cut(s) 304, 449, 514, 1346
Hpy8I GTNNAC 4 cut(s) 390, 498, 697, 1126
Hpy99I CGWCG 2 cut(s) 499, 1543
HpyAV CCTTC 5 cut(s) 310, 511, 671, 965, 1167
HpyCH4III ACNGT 2 cut(s) 164, 882
HpyCH4V TGCA 6 cut(s) 4, 390, 650, 862, 1031, 1471
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 868, 1016, 1022, 1245, 1307
HpyF3I CTNAG 4 cut(s) 70, 907, 959, 1521
Hsp92II CATG 7 cut(s) 105, 180, 565, 734, 1469, 1475, 1514
HspAI GCGC 1 cut(s) 1248
Kzo9I GATC 4 cut(s) 111, 193, 211, 1453
LguI GCTCTTC 1 cut(s) 1579
LmnI GCTCC 6 cut(s) 293, 397, 590, 868, 1157, 1413
Lsp1109I GCAGC 7 cut(s) 319, 322, 767, 858, 931, 1003, 1392
LweI GCATC 2 cut(s) 637, 1012
MaeI CTAG 7 cut(s) 272, 329, 839, 986, 1085, 1551, 1569
MaeIII GTNAC 4 cut(s) 468, 544, 614, 1093
MalI GATC 4 cut(s) 113, 195, 213, 1455
MboI GATC 4 cut(s) 111, 193, 211, 1453
MfeI CAATTG 2 cut(s) 738, 822
MflI RGATCY 1 cut(s) 1453
MhlI GDGCHC 2 cut(s) 392, 1223
MlyI GAGTC 8 cut(s) 796, 851, 1433, 1523, 1532, 1541, 1559, 1577
MmeI TCCRAC 1 cut(s) 183
MslI CAYNNNNRTG 3 cut(s) 704, 1470, 1476
MspCI CTTAAG 1 cut(s) 668
MspI CCGG 4 cut(s) 219, 971, 1098, 1411
MspR9I CCNGG 1 cut(s) 151
MunI CAATTG 2 cut(s) 738, 822
Mva1269I GAATGC 1 cut(s) 1250
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 6 cut(s) 10, 868, 1016, 1022, 1245, 1307
NdeII GATC 4 cut(s) 111, 193, 211, 1453
NlaIII CATG 7 cut(s) 105, 180, 565, 734, 1469, 1475, 1514
NlaIV GGNNCC 5 cut(s) 223, 289, 411, 856, 1455
NmeAIII GCCGAG 1 cut(s) 1036
NmuCI GTSAC 1 cut(s) 614
NsbI TGCGCA 1 cut(s) 1249
NspI RCATGY 3 cut(s) 565, 1469, 1475
NspV TTCGAA 1 cut(s) 567
PaeI GCATGC 1 cut(s) 1475
PciI ACATGT 1 cut(s) 561
PciSI GCTCTTC 1 cut(s) 1579
PctI GAATGC 1 cut(s) 1250
PfeI GAWTC 2 cut(s) 457, 1517
PkrI GCNGC 8 cut(s) 15, 334, 337, 757, 873, 946, 1018, 1407
PleI GAGTC 8 cut(s) 796, 850, 1432, 1523, 1531, 1541, 1559, 1577
PpsI GAGTC 8 cut(s) 796, 850, 1432, 1523, 1531, 1541, 1559, 1577
PpuMI RGGWCCY 1 cut(s) 410
PscI ACATGT 1 cut(s) 561
PshBI ATTAAT 1 cut(s) 1277
Psp124BI GAGCTC 1 cut(s) 1223
Psp5II RGGWCCY 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 149
PspEI GGTNACC 1 cut(s) 544
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 5 cut(s) 223, 289, 411, 856, 1455
PspPI GGNCC 2 cut(s) 410, 973
PspPPI RGGWCCY 1 cut(s) 410
PsuI RGATCY 1 cut(s) 1453
RsaI GTAC 3 cut(s) 148, 772, 951
RsaNI GTAC 3 cut(s) 147, 771, 950
RseI CAYNNNNRTG 3 cut(s) 704, 1470, 1476
SacI GAGCTC 1 cut(s) 1223
SalI GTCGAC 1 cut(s) 496
SapI GCTCTTC 1 cut(s) 1579
SatI GCNGC 8 cut(s) 14, 333, 336, 756, 872, 945, 1017, 1406
Sau3AI GATC 4 cut(s) 111, 193, 211, 1453
Sau96I GGNCC 2 cut(s) 410, 973
SchI GAGTC 8 cut(s) 796, 851, 1433, 1523, 1532, 1541, 1559, 1577
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 2 cut(s) 392, 1223
SfaNI GCATC 2 cut(s) 637, 1012
SfuI TTCGAA 1 cut(s) 567
SinI GGWCC 1 cut(s) 410
SmiMI CAYNNNNRTG 3 cut(s) 704, 1470, 1476
SmlI CTYRAG 4 cut(s) 596, 668, 893, 1346
SmoI CTYRAG 4 cut(s) 596, 668, 893, 1346
SpeI ACTAGT 1 cut(s) 1084
SphI GCATGC 1 cut(s) 1475
SsiI CCGC 2 cut(s) 14, 338
SspMI CTAG 7 cut(s) 272, 329, 839, 986, 1085, 1551, 1569
SstI GAGCTC 1 cut(s) 1223
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 164, 882
TaqI TCGA 8 cut(s) 316, 345, 431, 497, 567, 645, 675, 810
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 2 cut(s) 457, 1517
TscAI CASTG 2 cut(s) 129, 399
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 7 cut(s) 332, 335, 755, 871, 944, 1016, 1405
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 4 cut(s) 449, 719, 1120, 1566
TspRI CASTG 2 cut(s) 129, 399
Vha464I CTTAAG 1 cut(s) 668
VneI GTGCAC 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 410
VspI ATTAAT 1 cut(s) 1277
XapI RAATTY 3 cut(s) 135, 990, 1136
XceI RCATGY 3 cut(s) 565, 1469, 1475
XmiI GTMKAC 1 cut(s) 497
XspI CTAG 7 cut(s) 272, 329, 839, 986, 1085, 1551, 1569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.