RLG00000004676

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
61334111 .. 61336261
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004676

Sequence Viewer

Length: 1647 bp
ATGGAGTTGGACAGAATAAGCAACTTACCTGGTGGTGTTATACAAAAGATTTTGTCATATTTGCCGATCAGGGAGGCGGTGAGGACATGTGTTTTGTCGAGCAACTGGAGGTGCAAATGGGCTATGCTTCCCCGTCTCGTGTTTGATGATCATCAAATCGGAACAACCAGCAAGGCGAGGAGGAGGAAAACTTCATTTGTGAGCATTGTTGATCGTGTTCTGTTACTTCAAATCGGCCCTGTAGATGCTTTTGACCTTGTTTATCGGAAATTTATAGCCGCTAGTGACGTTGACAGATGGATTCTTCATTTAACTAGAAAATCTTTGAAAGAGTTCACACTCACAAAATCCAGGGGGTCTCAGTACAAGATATCGTCATGTTTGTTTTCTTGCCAAGAGTTGATTCATTTGGATTTAAACAACTGTTCGCTTTGCCCCCCTTCGAGATTCAAAGGCTTCCGGAGATTGAAGAGCCTTCGGCTTCAAAACATTACTGTTGTCCAAGATGTGTTTGAAAAATTGATTGGTTCCTGCCCCCTGCTTGAGAGGCTGACTCTAATTGACTTGAACGGTATCACCCATCTCAAGATCGATGCACCTAATCTCCAATTCCTTGAAGTCCAAGATACTTTTGAGGATGTTAAGGTGGAGAATACCTTAAATCTGGTTGATGTTTTAATTGATTTTGGTGAAGCTTCTAGCTACTGTAGCAATTTGCTTAAGTATTTTGTTCAGCTACCACTTATGGAAAGGCTTACAATCAAGGGTTTCCTTTCAAAGTGTGCTATTGGTACCTCGGCAGAGGAGCTGCCAATACCATGTCGATGTCTGAAGTTCCTTTCTATAGGCATACGCTTGAATAATTTGGAGGAGATATTAGCTGCTATATGCTTTCTGAGAAGCTCACCTGCTCTACAAGAACTCAAAATTTCAGTTCACCAAGAAGGTGAGGCTACTGCTGGAGAAGCGACCTATTGGTTAAATGAAAATCATAATTGGGCATTCACCCAACTGCGACTTATGAAAGTGACTGCCTTCTCTGGTGTTAAAGCTGAAGTAGACTTCATCAAATTTCTTCTTTTGAGCTCTCCTGCTCTTGAAGAACTAGAAATTGTGGCACCTTTTGAAGATCAGGCTGTTTCAGGAGAAGTGAATTCTTGGTTAGATGACAACCTGAACTGGGCATTCACCCAACTGCGACTTGTGAAAGTAACTTGCTTCTCTGGTGTGAAAGCTGAGGTAGACTTCATTAAGTTTCTGCTTTTGAGCTCTCCTGCTCTTCAAGAACTACAAATCTCGGCTCGCCATCATGTTGTTCTGGGAGAGGTGAACCCATGGTCAGATGACAACCAGAATTGTGTATTTACCCACCTACGAGTTGTGCAATTAACAGGCATTCATGGAGTCAAACCTGAAGTAGATTTCATCAGATTTCTGCTTTCAAGTTCACCTGTGCTTGAGAGGATGACTATTCAGCCTACTTCTGTAGATTGTTCTTTGGAGCTGTTAAAGAAATTGGTCCAGTTTAGGCGTGCGTCAGTGGATGCAGAGATAAGCTACTTGGATCCATTGAGTTCAGAATCTGATGAGGATTCTGACTTTGATGATGATTATACTGATCTTGAGTCTGATTCAGATTCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

549

Amino Acids

62.06

Weight (kDa)

5.29

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 90 - 371 6.6e-19 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 97 - 310 4.5e-17 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 453 - 491 2.5e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 916
Acc36I ACCTGC 1 cut(s) 916
Acc65I GGTACC 1 cut(s) 791
AccB1I GGYRCC 2 cut(s) 791, 1117
AccI GTMKAC 2 cut(s) 1059, 1242
AccIII TCCGGA 1 cut(s) 459
AciI CCGC 2 cut(s) 77, 279
AclWI GGATC 2 cut(s) 1559, 1572
AcsI RAATTY 4 cut(s) 269, 927, 1070, 1153
AcuI CTGAAG 3 cut(s) 851, 1074, 1434
AfaI GTAC 2 cut(s) 365, 793
AfiI CCNNNNNNNGG 1 cut(s) 1180
AflII CTTAAG 1 cut(s) 719
AflIII ACRYGT 1 cut(s) 86
AjnI CCWGG 2 cut(s) 28, 350
AjuI GAANNNNNNNTTGG 4 cut(s) 387, 419, 507, 539
Alw21I GWGCWC 2 cut(s) 1088, 1271
Alw26I GTCTC 2 cut(s) 140, 363
AlwI GGATC 2 cut(s) 1559, 1572
AlwNI CAGNNNCTG 2 cut(s) 1583, 1640
Aor13HI TCCGGA 1 cut(s) 459
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 808, 881
ApoI RAATTY 4 cut(s) 269, 927, 1070, 1153
ArsI GACNNNNNNTTYG 2 cut(s) 76, 108
Asp700I GAANNNNTTC 1 cut(s) 332
Asp718I GGTACC 1 cut(s) 791
AspS9I GGNCC 2 cut(s) 236, 1519
AvaII GGWCC 1 cut(s) 1519
BamHI GGATCC 1 cut(s) 1564
BanI GGYRCC 2 cut(s) 791, 1117
BanII GRGCYC 2 cut(s) 1088, 1271
BauI CACGAG 1 cut(s) 137
Bbv12I GWGCWC 2 cut(s) 1088, 1271
BbvCI CCTCAGC 1 cut(s) 1236
BbvI GCAGC 2 cut(s) 795, 868
BccI CCATC 3 cut(s) 291, 588, 1314
BciT130I CCWGG 2 cut(s) 30, 352
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 140, 363
BfaI CTAG 4 cut(s) 282, 315, 699, 1106
BfmI CTRYAG 4 cut(s) 240, 706, 843, 1485
BfrI CTTAAG 1 cut(s) 719
BfuAI ACCTGC 1 cut(s) 916
BisI GCNGC 3 cut(s) 279, 809, 882
BlsI GCNGC 3 cut(s) 280, 810, 883
Bme1390I CCNGG 2 cut(s) 30, 352
Bme18I GGWCC 1 cut(s) 1519
BmgT120I GGNCC 2 cut(s) 236, 1519
BmiI GGNNCC 4 cut(s) 529, 793, 1119, 1566
BmrFI CCNGG 2 cut(s) 30, 352
BmrI ACTGGG 1 cut(s) 1189
BmsI GCATC 3 cut(s) 235, 583, 1534
BmuI ACTGGG 1 cut(s) 1189
BplI GAGNNNNNCTC 2 cut(s) 538, 570
BpmI CTGGAG 2 cut(s) 127, 981
Bpu10I CCTNAGC 1 cut(s) 1236
BpuEI CTTGAG 4 cut(s) 563, 569, 1478, 1643
Bsa29I ATCGAT 1 cut(s) 591
BsaBI GATNNNNATC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 3 cut(s) 351, 795, 1334
BsaWI WCCGGW 1 cut(s) 459
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 1 cut(s) 1180
Bse1I ACTGG 3 cut(s) 110, 1184, 1522
Bse8I GATNNNNATC 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 459
BseBI CCWGG 2 cut(s) 30, 352
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 3 cut(s) 351, 795, 1334
BseGI GGATG 3 cut(s) 643, 1470, 1549
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 1180
BseMII CTCAG 3 cut(s) 374, 887, 1227
BseNI ACTGG 3 cut(s) 110, 1184, 1522
BseRI GAGGAG 4 cut(s) 193, 196, 818, 884
BseXI GCAGC 2 cut(s) 795, 868
BshFI GGCC 1 cut(s) 237
BshNI GGYRCC 2 cut(s) 791, 1117
BshVI ATCGAT 1 cut(s) 591
BsiHKAI GWGCWC 2 cut(s) 1088, 1271
BsiSI CCGG 1 cut(s) 460
BslI CCNNNNNNNGG 1 cut(s) 1180
BsmAI GTCTC 2 cut(s) 140, 363
BsmBI CGTCTC 1 cut(s) 140
BsmI GAATGC 3 cut(s) 1001, 1184, 1395
BsnI GGCC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 363
Bsp1286I GDGCHC 2 cut(s) 1088, 1271
Bsp13I TCCGGA 1 cut(s) 459
Bsp143I GATC 7 cut(s) 66, 148, 211, 588, 1129, 1564, 1618
Bsp19I CCATGG 1 cut(s) 1334
BspACI CCGC 2 cut(s) 77, 279
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 3 cut(s) 373, 888, 1228
BspDI ATCGAT 1 cut(s) 591
BspEI TCCGGA 1 cut(s) 459
BspLI GGNNCC 4 cut(s) 529, 793, 1119, 1566
BspMI ACCTGC 1 cut(s) 916
BspPI GGATC 2 cut(s) 1559, 1572
BspQI GCTCTTC 2 cut(s) 464, 1284
BspT107I GGYRCC 2 cut(s) 791, 1117
BspTI CTTAAG 1 cut(s) 719
BspTNI GGTCTC 1 cut(s) 363
BsrI ACTGG 3 cut(s) 110, 1184, 1522
BssECI CCNNGG 3 cut(s) 351, 795, 1334
BssMI GATC 7 cut(s) 66, 148, 211, 588, 1129, 1564, 1618
BssSI CACGAG 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 1334
Bst2BI CACGAG 1 cut(s) 137
Bst2UI CCWGG 2 cut(s) 30, 352
Bst4CI ACNGT 4 cut(s) 425, 496, 572, 707
Bst6I CTCTTC 2 cut(s) 464, 1284
BstAFI CTTAAG 1 cut(s) 719
BstC8I GCNNGC 2 cut(s) 1303, 1533
BstDEI CTNAG 3 cut(s) 360, 896, 1236
BstDSI CCRYGG 1 cut(s) 1334
BstF5I GGATG 3 cut(s) 643, 1470, 1549
BstKTI GATC 7 cut(s) 69, 151, 214, 591, 1132, 1567, 1621
BstMAI GTCTC 2 cut(s) 140, 363
BstMBI GATC 7 cut(s) 66, 148, 211, 588, 1129, 1564, 1618
BstMWI GCNNNNNNNGC 3 cut(s) 547, 708, 965
BstNI CCWGG 2 cut(s) 30, 352
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 2 cut(s) 28, 350
BstSFI CTRYAG 4 cut(s) 240, 706, 843, 1485
BstV1I GCAGC 2 cut(s) 795, 868
BstX2I RGATCY 1 cut(s) 1564
BstYI RGATCY 1 cut(s) 1564
Bsu15I ATCGAT 1 cut(s) 591
BsuRI GGCC 1 cut(s) 237
BsuTUI ATCGAT 1 cut(s) 591
BtgI CCRYGG 1 cut(s) 1334
BtsCI GGATG 3 cut(s) 643, 1470, 1549
BtsIMutI CAGTG 1 cut(s) 1545
BveI ACCTGC 1 cut(s) 916
Cac8I GCNNGC 2 cut(s) 1303, 1533
CaiI CAGNNNCTG 2 cut(s) 1583, 1640
Cfr13I GGNCC 2 cut(s) 236, 1519
ClaI ATCGAT 1 cut(s) 591
CseI GACGC 1 cut(s) 1524
CsiI ACCWGGT 1 cut(s) 28
Csp6I GTAC 2 cut(s) 364, 792
CviAII CATG 6 cut(s) 87, 378, 819, 1310, 1335, 1400
CviQI GTAC 2 cut(s) 364, 792
DdeI CTNAG 3 cut(s) 360, 896, 1236
DpnI GATC 7 cut(s) 68, 150, 213, 590, 1131, 1566, 1620
DpnII GATC 7 cut(s) 66, 148, 211, 588, 1129, 1564, 1618
DraI TTTAAA 1 cut(s) 417
Eam1104I CTCTTC 2 cut(s) 464, 1284
EarI CTCTTC 2 cut(s) 464, 1284
Ecl136II GAGCTC 2 cut(s) 1086, 1269
Eco130I CCWWGG 1 cut(s) 1334
Eco24I GRGCYC 2 cut(s) 1088, 1271
Eco31I GGTCTC 1 cut(s) 363
Eco32I GATATC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 1519
Eco53kI GAGCTC 2 cut(s) 1086, 1269
Eco57I CTGAAG 3 cut(s) 851, 1074, 1434
EcoICRI GAGCTC 2 cut(s) 1086, 1269
EcoRI GAATTC 1 cut(s) 1153
EcoRII CCWGG 2 cut(s) 28, 350
EcoRV GATATC 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 1334
EcoT38I GRGCYC 2 cut(s) 1088, 1271
ErhI CCWWGG 1 cut(s) 1334
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 6 cut(s) 90, 381, 822, 1313, 1338, 1403
FatI CATG 6 cut(s) 86, 377, 818, 1309, 1334, 1399
FbaI TGATCA 1 cut(s) 148
FblI GTMKAC 2 cut(s) 1059, 1242
Fnu4HI GCNGC 3 cut(s) 279, 809, 882
FokI GGATG 3 cut(s) 650, 1477, 1556
FriOI GRGCYC 2 cut(s) 1088, 1271
Fsp4HI GCNGC 3 cut(s) 279, 809, 882
FspBI CTAG 4 cut(s) 282, 315, 699, 1106
GluI GCNGC 3 cut(s) 279, 809, 882
GsuI CTGGAG 2 cut(s) 127, 981
HaeIII GGCC 1 cut(s) 237
HapII CCGG 1 cut(s) 460
HgaI GACGC 1 cut(s) 1524
Hin1II CATG 6 cut(s) 90, 381, 822, 1313, 1338, 1403
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 693
HpaII CCGG 1 cut(s) 460
Hpy166II GTNNAC 7 cut(s) 292, 336, 937, 1060, 1243, 1330, 1448
Hpy188III TCNNGA 7 cut(s) 444, 460, 586, 1097, 1143, 1283, 1622
Hpy8I GTNNAC 7 cut(s) 292, 336, 937, 1060, 1243, 1330, 1448
HpyAV CCTTC 4 cut(s) 450, 485, 938, 1045
HpyCH4III ACNGT 4 cut(s) 425, 496, 572, 707
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 4 cut(s) 114, 596, 1384, 1547
HpyF10VI GCNNNNNNNGC 3 cut(s) 547, 708, 965
HpyF3I CTNAG 3 cut(s) 360, 896, 1236
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 6 cut(s) 90, 381, 822, 1313, 1338, 1403
Kpn2I TCCGGA 1 cut(s) 459
KpnI GGTACC 1 cut(s) 795
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 7 cut(s) 66, 148, 211, 588, 1129, 1564, 1618
LguI GCTCTTC 2 cut(s) 464, 1284
LmnI GCTCC 2 cut(s) 805, 1501
Lsp1109I GCAGC 2 cut(s) 795, 868
LweI GCATC 3 cut(s) 235, 583, 1534
MabI ACCWGGT 1 cut(s) 28
MaeI CTAG 4 cut(s) 282, 315, 699, 1106
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 4 cut(s) 222, 284, 1027, 1210
MalI GATC 7 cut(s) 68, 150, 213, 590, 1131, 1566, 1620
MboI GATC 7 cut(s) 66, 148, 211, 588, 1129, 1564, 1618
MboII GAAGA 6 cut(s) 296, 481, 1067, 1112, 1139, 1271
MflI RGATCY 1 cut(s) 1564
MhlI GDGCHC 2 cut(s) 1088, 1271
MlyI GAGTC 3 cut(s) 547, 1413, 1634
MroI TCCGGA 1 cut(s) 459
MroXI GAANNNNTTC 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 823
MspCI CTTAAG 1 cut(s) 719
MspI CCGG 1 cut(s) 460
MspR9I CCNGG 2 cut(s) 30, 352
Mva1269I GAATGC 3 cut(s) 1001, 1184, 1395
MvaI CCWGG 2 cut(s) 30, 352
MwoI GCNNNNNNNGC 3 cut(s) 547, 708, 965
NcoI CCATGG 1 cut(s) 1334
NdeII GATC 7 cut(s) 66, 148, 211, 588, 1129, 1564, 1618
NlaIII CATG 6 cut(s) 90, 381, 822, 1313, 1338, 1403
NlaIV GGNNCC 4 cut(s) 529, 793, 1119, 1566
NmeAIII GCCGAG 2 cut(s) 776, 1277
NmuCI GTSAC 2 cut(s) 284, 1027
NspI RCATGY 1 cut(s) 90
PaqCI CACCTGC 1 cut(s) 916
PciI ACATGT 1 cut(s) 86
PciSI GCTCTTC 2 cut(s) 464, 1284
PctI GAATGC 3 cut(s) 1001, 1184, 1395
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 7 cut(s) 301, 403, 447, 1580, 1592, 1631, 1637
PkrI GCNGC 3 cut(s) 280, 810, 883
PleI GAGTC 3 cut(s) 547, 1412, 1633
PpsI GAGTC 3 cut(s) 547, 1412, 1633
PscI ACATGT 1 cut(s) 86
Psp124BI GAGCTC 2 cut(s) 1088, 1271
Psp6I CCWGG 2 cut(s) 28, 350
PspGI CCWGG 2 cut(s) 28, 350
PspN4I GGNNCC 4 cut(s) 529, 793, 1119, 1566
PspPI GGNCC 2 cut(s) 236, 1519
PstNI CAGNNNCTG 2 cut(s) 1583, 1640
PsuI RGATCY 1 cut(s) 1564
RsaI GTAC 2 cut(s) 365, 793
RsaNI GTAC 2 cut(s) 364, 792
RseI CAYNNNNRTG 1 cut(s) 823
SacI GAGCTC 2 cut(s) 1088, 1271
SapI GCTCTTC 2 cut(s) 464, 1284
SatI GCNGC 3 cut(s) 279, 809, 882
Sau3AI GATC 7 cut(s) 66, 148, 211, 588, 1129, 1564, 1618
Sau96I GGNCC 2 cut(s) 236, 1519
SchI GAGTC 3 cut(s) 547, 1413, 1634
ScrFI CCNGG 2 cut(s) 30, 352
SduI GDGCHC 2 cut(s) 1088, 1271
SexAI ACCWGGT 1 cut(s) 28
SfaNI GCATC 3 cut(s) 235, 583, 1534
SfcI CTRYAG 4 cut(s) 240, 706, 843, 1485
SinI GGWCC 1 cut(s) 1519
SmiMI CAYNNNNRTG 1 cut(s) 823
SmlI CTYRAG 5 cut(s) 542, 584, 719, 1457, 1622
SmoI CTYRAG 5 cut(s) 542, 584, 719, 1457, 1622
SsiI CCGC 2 cut(s) 77, 279
SspMI CTAG 4 cut(s) 282, 315, 699, 1106
SstI GAGCTC 2 cut(s) 1088, 1271
StyD4I CCNGG 2 cut(s) 28, 350
StyI CCWWGG 1 cut(s) 1334
TaaI ACNGT 4 cut(s) 425, 496, 572, 707
TaiI ACGT 1 cut(s) 291
TaqI TCGA 4 cut(s) 98, 443, 591, 823
TatI WGTACW 1 cut(s) 363
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 7 cut(s) 301, 403, 447, 1580, 1592, 1631, 1637
TscAI CASTG 1 cut(s) 1545
TseFI GTSAC 2 cut(s) 284, 1027
TseI GCWGC 2 cut(s) 808, 881
Tsp45I GTSAC 2 cut(s) 284, 1027
TspDTI ATGAA 9 cut(s) 183, 296, 395, 999, 1037, 1054, 1237, 1388, 1414
TspRI CASTG 1 cut(s) 1545
Vha464I CTTAAG 1 cut(s) 719
VpaK11BI GGWCC 1 cut(s) 1519
XapI RAATTY 4 cut(s) 269, 927, 1070, 1153
XceI RCATGY 1 cut(s) 90
XmiI GTMKAC 2 cut(s) 1059, 1242
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 4 cut(s) 282, 315, 699, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.