F-box FBD LRR-repeat protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g25150 FvH4_5g01320 FvH4_5g01330 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 |
| rosa_chinensis | RchiOBHm_Chr5g0049261 RchiOBHm_Chr7g0188631 RchiOBHm_Chr7g0199601 |
| rosa_laevigata | RLG00000003784 RLG00000004676 RLG00000034607 |
| rosa_multiflora | Rmu_co8228169.1_g000001 Rmu_sc0005358.1_g000008 Rmu_sc0009191.1_g000012 Rmu_sc0018006.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00032400 Rroxscaffold_3G00256570 Rroxscaffold_3G00256590 Rroxscaffold_3G00266180 |
| rosa_rugosa | Rorug05G0246700 Rorug06G0491900 Rorug07G0055400 |
| rosa_samantha | Rh5BG334700 Rh5DG346800 Rh7CG099700 Rh7CG189900 Rh7CG190000 Rh7DG098800 |
| rosa_wichuraiana | Rw7G008360 Rw7G015840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 916 |
| Acc36I | ACCTGC | 1 cut(s) | 916 |
| Acc65I | GGTACC | 1 cut(s) | 791 |
| AccB1I | GGYRCC | 2 cut(s) | 791, 1117 |
| AccI | GTMKAC | 2 cut(s) | 1059, 1242 |
| AccIII | TCCGGA | 1 cut(s) | 459 |
| AciI | CCGC | 2 cut(s) | 77, 279 |
| AclWI | GGATC | 2 cut(s) | 1559, 1572 |
| AcsI | RAATTY | 4 cut(s) | 269, 927, 1070, 1153 |
| AcuI | CTGAAG | 3 cut(s) | 851, 1074, 1434 |
| AfaI | GTAC | 2 cut(s) | 365, 793 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1180 |
| AflII | CTTAAG | 1 cut(s) | 719 |
| AflIII | ACRYGT | 1 cut(s) | 86 |
| AjnI | CCWGG | 2 cut(s) | 28, 350 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 387, 419, 507, 539 |
| Alw21I | GWGCWC | 2 cut(s) | 1088, 1271 |
| Alw26I | GTCTC | 2 cut(s) | 140, 363 |
| AlwI | GGATC | 2 cut(s) | 1559, 1572 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1583, 1640 |
| Aor13HI | TCCGGA | 1 cut(s) | 459 |
| AoxI | GGCC | 1 cut(s) | 235 |
| ApeKI | GCWGC | 2 cut(s) | 808, 881 |
| ApoI | RAATTY | 4 cut(s) | 269, 927, 1070, 1153 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 76, 108 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 332 |
| Asp718I | GGTACC | 1 cut(s) | 791 |
| AspS9I | GGNCC | 2 cut(s) | 236, 1519 |
| AvaII | GGWCC | 1 cut(s) | 1519 |
| BamHI | GGATCC | 1 cut(s) | 1564 |
| BanI | GGYRCC | 2 cut(s) | 791, 1117 |
| BanII | GRGCYC | 2 cut(s) | 1088, 1271 |
| BauI | CACGAG | 1 cut(s) | 137 |
| Bbv12I | GWGCWC | 2 cut(s) | 1088, 1271 |
| BbvCI | CCTCAGC | 1 cut(s) | 1236 |
| BbvI | GCAGC | 2 cut(s) | 795, 868 |
| BccI | CCATC | 3 cut(s) | 291, 588, 1314 |
| BciT130I | CCWGG | 2 cut(s) | 30, 352 |
| BclI | TGATCA | 1 cut(s) | 148 |
| BcoDI | GTCTC | 2 cut(s) | 140, 363 |
| BfaI | CTAG | 4 cut(s) | 282, 315, 699, 1106 |
| BfmI | CTRYAG | 4 cut(s) | 240, 706, 843, 1485 |
| BfrI | CTTAAG | 1 cut(s) | 719 |
| BfuAI | ACCTGC | 1 cut(s) | 916 |
| BisI | GCNGC | 3 cut(s) | 279, 809, 882 |
| BlsI | GCNGC | 3 cut(s) | 280, 810, 883 |
| Bme1390I | CCNGG | 2 cut(s) | 30, 352 |
| Bme18I | GGWCC | 1 cut(s) | 1519 |
| BmgT120I | GGNCC | 2 cut(s) | 236, 1519 |
| BmiI | GGNNCC | 4 cut(s) | 529, 793, 1119, 1566 |
| BmrFI | CCNGG | 2 cut(s) | 30, 352 |
| BmrI | ACTGGG | 1 cut(s) | 1189 |
| BmsI | GCATC | 3 cut(s) | 235, 583, 1534 |
| BmuI | ACTGGG | 1 cut(s) | 1189 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 538, 570 |
| BpmI | CTGGAG | 2 cut(s) | 127, 981 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1236 |
| BpuEI | CTTGAG | 4 cut(s) | 563, 569, 1478, 1643 |
| Bsa29I | ATCGAT | 1 cut(s) | 591 |
| BsaBI | GATNNNNATC | 1 cut(s) | 150 |
| BsaI | GGTCTC | 1 cut(s) | 363 |
| BsaJI | CCNNGG | 3 cut(s) | 351, 795, 1334 |
| BsaWI | WCCGGW | 1 cut(s) | 459 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 588, 618 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1180 |
| Bse1I | ACTGG | 3 cut(s) | 110, 1184, 1522 |
| Bse8I | GATNNNNATC | 1 cut(s) | 150 |
| BseAI | TCCGGA | 1 cut(s) | 459 |
| BseBI | CCWGG | 2 cut(s) | 30, 352 |
| BseCI | ATCGAT | 1 cut(s) | 591 |
| BseDI | CCNNGG | 3 cut(s) | 351, 795, 1334 |
| BseGI | GGATG | 3 cut(s) | 643, 1470, 1549 |
| BseJI | GATNNNNATC | 1 cut(s) | 150 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1180 |
| BseMII | CTCAG | 3 cut(s) | 374, 887, 1227 |
| BseNI | ACTGG | 3 cut(s) | 110, 1184, 1522 |
| BseRI | GAGGAG | 4 cut(s) | 193, 196, 818, 884 |
| BseXI | GCAGC | 2 cut(s) | 795, 868 |
| BshFI | GGCC | 1 cut(s) | 237 |
| BshNI | GGYRCC | 2 cut(s) | 791, 1117 |
| BshVI | ATCGAT | 1 cut(s) | 591 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1088, 1271 |
| BsiSI | CCGG | 1 cut(s) | 460 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1180 |
| BsmAI | GTCTC | 2 cut(s) | 140, 363 |
| BsmBI | CGTCTC | 1 cut(s) | 140 |
| BsmI | GAATGC | 3 cut(s) | 1001, 1184, 1395 |
| BsnI | GGCC | 1 cut(s) | 237 |
| Bso31I | GGTCTC | 1 cut(s) | 363 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1088, 1271 |
| Bsp13I | TCCGGA | 1 cut(s) | 459 |
| Bsp143I | GATC | 7 cut(s) | 66, 148, 211, 588, 1129, 1564, 1618 |
| Bsp19I | CCATGG | 1 cut(s) | 1334 |
| BspACI | CCGC | 2 cut(s) | 77, 279 |
| BspANI | GGCC | 1 cut(s) | 237 |
| BspCNI | CTCAG | 3 cut(s) | 373, 888, 1228 |
| BspDI | ATCGAT | 1 cut(s) | 591 |
| BspEI | TCCGGA | 1 cut(s) | 459 |
| BspLI | GGNNCC | 4 cut(s) | 529, 793, 1119, 1566 |
| BspMI | ACCTGC | 1 cut(s) | 916 |
| BspPI | GGATC | 2 cut(s) | 1559, 1572 |
| BspQI | GCTCTTC | 2 cut(s) | 464, 1284 |
| BspT107I | GGYRCC | 2 cut(s) | 791, 1117 |
| BspTI | CTTAAG | 1 cut(s) | 719 |
| BspTNI | GGTCTC | 1 cut(s) | 363 |
| BsrI | ACTGG | 3 cut(s) | 110, 1184, 1522 |
| BssECI | CCNNGG | 3 cut(s) | 351, 795, 1334 |
| BssMI | GATC | 7 cut(s) | 66, 148, 211, 588, 1129, 1564, 1618 |
| BssSI | CACGAG | 1 cut(s) | 137 |
| BssT1I | CCWWGG | 1 cut(s) | 1334 |
| Bst2BI | CACGAG | 1 cut(s) | 137 |
| Bst2UI | CCWGG | 2 cut(s) | 30, 352 |
| Bst4CI | ACNGT | 4 cut(s) | 425, 496, 572, 707 |
| Bst6I | CTCTTC | 2 cut(s) | 464, 1284 |
| BstAFI | CTTAAG | 1 cut(s) | 719 |
| BstC8I | GCNNGC | 2 cut(s) | 1303, 1533 |
| BstDEI | CTNAG | 3 cut(s) | 360, 896, 1236 |
| BstDSI | CCRYGG | 1 cut(s) | 1334 |
| BstF5I | GGATG | 3 cut(s) | 643, 1470, 1549 |
| BstKTI | GATC | 7 cut(s) | 69, 151, 214, 591, 1132, 1567, 1621 |
| BstMAI | GTCTC | 2 cut(s) | 140, 363 |
| BstMBI | GATC | 7 cut(s) | 66, 148, 211, 588, 1129, 1564, 1618 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 547, 708, 965 |
| BstNI | CCWGG | 2 cut(s) | 30, 352 |
| BstNSI | RCATGY | 1 cut(s) | 90 |
| BstSCI | CCNGG | 2 cut(s) | 28, 350 |
| BstSFI | CTRYAG | 4 cut(s) | 240, 706, 843, 1485 |
| BstV1I | GCAGC | 2 cut(s) | 795, 868 |
| BstX2I | RGATCY | 1 cut(s) | 1564 |
| BstYI | RGATCY | 1 cut(s) | 1564 |
| Bsu15I | ATCGAT | 1 cut(s) | 591 |
| BsuRI | GGCC | 1 cut(s) | 237 |
| BsuTUI | ATCGAT | 1 cut(s) | 591 |
| BtgI | CCRYGG | 1 cut(s) | 1334 |
| BtsCI | GGATG | 3 cut(s) | 643, 1470, 1549 |
| BtsIMutI | CAGTG | 1 cut(s) | 1545 |
| BveI | ACCTGC | 1 cut(s) | 916 |
| Cac8I | GCNNGC | 2 cut(s) | 1303, 1533 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1583, 1640 |
| Cfr13I | GGNCC | 2 cut(s) | 236, 1519 |
| ClaI | ATCGAT | 1 cut(s) | 591 |
| CseI | GACGC | 1 cut(s) | 1524 |
| CsiI | ACCWGGT | 1 cut(s) | 28 |
| Csp6I | GTAC | 2 cut(s) | 364, 792 |
| CviAII | CATG | 6 cut(s) | 87, 378, 819, 1310, 1335, 1400 |
| CviQI | GTAC | 2 cut(s) | 364, 792 |
| DdeI | CTNAG | 3 cut(s) | 360, 896, 1236 |
| DpnI | GATC | 7 cut(s) | 68, 150, 213, 590, 1131, 1566, 1620 |
| DpnII | GATC | 7 cut(s) | 66, 148, 211, 588, 1129, 1564, 1618 |
| DraI | TTTAAA | 1 cut(s) | 417 |
| Eam1104I | CTCTTC | 2 cut(s) | 464, 1284 |
| EarI | CTCTTC | 2 cut(s) | 464, 1284 |
| Ecl136II | GAGCTC | 2 cut(s) | 1086, 1269 |
| Eco130I | CCWWGG | 1 cut(s) | 1334 |
| Eco24I | GRGCYC | 2 cut(s) | 1088, 1271 |
| Eco31I | GGTCTC | 1 cut(s) | 363 |
| Eco32I | GATATC | 1 cut(s) | 372 |
| Eco47I | GGWCC | 1 cut(s) | 1519 |
| Eco53kI | GAGCTC | 2 cut(s) | 1086, 1269 |
| Eco57I | CTGAAG | 3 cut(s) | 851, 1074, 1434 |
| EcoICRI | GAGCTC | 2 cut(s) | 1086, 1269 |
| EcoRI | GAATTC | 1 cut(s) | 1153 |
| EcoRII | CCWGG | 2 cut(s) | 28, 350 |
| EcoRV | GATATC | 1 cut(s) | 372 |
| EcoT14I | CCWWGG | 1 cut(s) | 1334 |
| EcoT38I | GRGCYC | 2 cut(s) | 1088, 1271 |
| ErhI | CCWWGG | 1 cut(s) | 1334 |
| Esp3I | CGTCTC | 1 cut(s) | 140 |
| FaeI | CATG | 6 cut(s) | 90, 381, 822, 1313, 1338, 1403 |
| FatI | CATG | 6 cut(s) | 86, 377, 818, 1309, 1334, 1399 |
| FbaI | TGATCA | 1 cut(s) | 148 |
| FblI | GTMKAC | 2 cut(s) | 1059, 1242 |
| Fnu4HI | GCNGC | 3 cut(s) | 279, 809, 882 |
| FokI | GGATG | 3 cut(s) | 650, 1477, 1556 |
| FriOI | GRGCYC | 2 cut(s) | 1088, 1271 |
| Fsp4HI | GCNGC | 3 cut(s) | 279, 809, 882 |
| FspBI | CTAG | 4 cut(s) | 282, 315, 699, 1106 |
| GluI | GCNGC | 3 cut(s) | 279, 809, 882 |
| GsuI | CTGGAG | 2 cut(s) | 127, 981 |
| HaeIII | GGCC | 1 cut(s) | 237 |
| HapII | CCGG | 1 cut(s) | 460 |
| HgaI | GACGC | 1 cut(s) | 1524 |
| Hin1II | CATG | 6 cut(s) | 90, 381, 822, 1313, 1338, 1403 |
| HincII | GTYRAC | 1 cut(s) | 292 |
| HindII | GTYRAC | 1 cut(s) | 292 |
| HindIII | AAGCTT | 1 cut(s) | 693 |
| HpaII | CCGG | 1 cut(s) | 460 |
| Hpy166II | GTNNAC | 7 cut(s) | 292, 336, 937, 1060, 1243, 1330, 1448 |
| Hpy188III | TCNNGA | 7 cut(s) | 444, 460, 586, 1097, 1143, 1283, 1622 |
| Hpy8I | GTNNAC | 7 cut(s) | 292, 336, 937, 1060, 1243, 1330, 1448 |
| HpyAV | CCTTC | 4 cut(s) | 450, 485, 938, 1045 |
| HpyCH4III | ACNGT | 4 cut(s) | 425, 496, 572, 707 |
| HpyCH4IV | ACGT | 1 cut(s) | 288 |
| HpyCH4V | TGCA | 4 cut(s) | 114, 596, 1384, 1547 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 547, 708, 965 |
| HpyF3I | CTNAG | 3 cut(s) | 360, 896, 1236 |
| HpySE526I | ACGT | 1 cut(s) | 288 |
| Hsp92II | CATG | 6 cut(s) | 90, 381, 822, 1313, 1338, 1403 |
| Kpn2I | TCCGGA | 1 cut(s) | 459 |
| KpnI | GGTACC | 1 cut(s) | 795 |
| Ksp22I | TGATCA | 1 cut(s) | 148 |
| Kzo9I | GATC | 7 cut(s) | 66, 148, 211, 588, 1129, 1564, 1618 |
| LguI | GCTCTTC | 2 cut(s) | 464, 1284 |
| LmnI | GCTCC | 2 cut(s) | 805, 1501 |
| Lsp1109I | GCAGC | 2 cut(s) | 795, 868 |
| LweI | GCATC | 3 cut(s) | 235, 583, 1534 |
| MabI | ACCWGGT | 1 cut(s) | 28 |
| MaeI | CTAG | 4 cut(s) | 282, 315, 699, 1106 |
| MaeII | ACGT | 1 cut(s) | 288 |
| MaeIII | GTNAC | 4 cut(s) | 222, 284, 1027, 1210 |
| MalI | GATC | 7 cut(s) | 68, 150, 213, 590, 1131, 1566, 1620 |
| MboI | GATC | 7 cut(s) | 66, 148, 211, 588, 1129, 1564, 1618 |
| MboII | GAAGA | 6 cut(s) | 296, 481, 1067, 1112, 1139, 1271 |
| MflI | RGATCY | 1 cut(s) | 1564 |
| MhlI | GDGCHC | 2 cut(s) | 1088, 1271 |
| MlyI | GAGTC | 3 cut(s) | 547, 1413, 1634 |
| MroI | TCCGGA | 1 cut(s) | 459 |
| MroXI | GAANNNNTTC | 1 cut(s) | 332 |
| MslI | CAYNNNNRTG | 1 cut(s) | 823 |
| MspCI | CTTAAG | 1 cut(s) | 719 |
| MspI | CCGG | 1 cut(s) | 460 |
| MspR9I | CCNGG | 2 cut(s) | 30, 352 |
| Mva1269I | GAATGC | 3 cut(s) | 1001, 1184, 1395 |
| MvaI | CCWGG | 2 cut(s) | 30, 352 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 547, 708, 965 |
| NcoI | CCATGG | 1 cut(s) | 1334 |
| NdeII | GATC | 7 cut(s) | 66, 148, 211, 588, 1129, 1564, 1618 |
| NlaIII | CATG | 6 cut(s) | 90, 381, 822, 1313, 1338, 1403 |
| NlaIV | GGNNCC | 4 cut(s) | 529, 793, 1119, 1566 |
| NmeAIII | GCCGAG | 2 cut(s) | 776, 1277 |
| NmuCI | GTSAC | 2 cut(s) | 284, 1027 |
| NspI | RCATGY | 1 cut(s) | 90 |
| PaqCI | CACCTGC | 1 cut(s) | 916 |
| PciI | ACATGT | 1 cut(s) | 86 |
| PciSI | GCTCTTC | 2 cut(s) | 464, 1284 |
| PctI | GAATGC | 3 cut(s) | 1001, 1184, 1395 |
| PdmI | GAANNNNTTC | 1 cut(s) | 332 |
| PfeI | GAWTC | 7 cut(s) | 301, 403, 447, 1580, 1592, 1631, 1637 |
| PkrI | GCNGC | 3 cut(s) | 280, 810, 883 |
| PleI | GAGTC | 3 cut(s) | 547, 1412, 1633 |
| PpsI | GAGTC | 3 cut(s) | 547, 1412, 1633 |
| PscI | ACATGT | 1 cut(s) | 86 |
| Psp124BI | GAGCTC | 2 cut(s) | 1088, 1271 |
| Psp6I | CCWGG | 2 cut(s) | 28, 350 |
| PspGI | CCWGG | 2 cut(s) | 28, 350 |
| PspN4I | GGNNCC | 4 cut(s) | 529, 793, 1119, 1566 |
| PspPI | GGNCC | 2 cut(s) | 236, 1519 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1583, 1640 |
| PsuI | RGATCY | 1 cut(s) | 1564 |
| RsaI | GTAC | 2 cut(s) | 365, 793 |
| RsaNI | GTAC | 2 cut(s) | 364, 792 |
| RseI | CAYNNNNRTG | 1 cut(s) | 823 |
| SacI | GAGCTC | 2 cut(s) | 1088, 1271 |
| SapI | GCTCTTC | 2 cut(s) | 464, 1284 |
| SatI | GCNGC | 3 cut(s) | 279, 809, 882 |
| Sau3AI | GATC | 7 cut(s) | 66, 148, 211, 588, 1129, 1564, 1618 |
| Sau96I | GGNCC | 2 cut(s) | 236, 1519 |
| SchI | GAGTC | 3 cut(s) | 547, 1413, 1634 |
| ScrFI | CCNGG | 2 cut(s) | 30, 352 |
| SduI | GDGCHC | 2 cut(s) | 1088, 1271 |
| SexAI | ACCWGGT | 1 cut(s) | 28 |
| SfaNI | GCATC | 3 cut(s) | 235, 583, 1534 |
| SfcI | CTRYAG | 4 cut(s) | 240, 706, 843, 1485 |
| SinI | GGWCC | 1 cut(s) | 1519 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 823 |
| SmlI | CTYRAG | 5 cut(s) | 542, 584, 719, 1457, 1622 |
| SmoI | CTYRAG | 5 cut(s) | 542, 584, 719, 1457, 1622 |
| SsiI | CCGC | 2 cut(s) | 77, 279 |
| SspMI | CTAG | 4 cut(s) | 282, 315, 699, 1106 |
| SstI | GAGCTC | 2 cut(s) | 1088, 1271 |
| StyD4I | CCNGG | 2 cut(s) | 28, 350 |
| StyI | CCWWGG | 1 cut(s) | 1334 |
| TaaI | ACNGT | 4 cut(s) | 425, 496, 572, 707 |
| TaiI | ACGT | 1 cut(s) | 291 |
| TaqI | TCGA | 4 cut(s) | 98, 443, 591, 823 |
| TatI | WGTACW | 1 cut(s) | 363 |
| TauI | GCSGC | 1 cut(s) | 281 |
| TfiI | GAWTC | 7 cut(s) | 301, 403, 447, 1580, 1592, 1631, 1637 |
| TscAI | CASTG | 1 cut(s) | 1545 |
| TseFI | GTSAC | 2 cut(s) | 284, 1027 |
| TseI | GCWGC | 2 cut(s) | 808, 881 |
| Tsp45I | GTSAC | 2 cut(s) | 284, 1027 |
| TspDTI | ATGAA | 9 cut(s) | 183, 296, 395, 999, 1037, 1054, 1237, 1388, 1414 |
| TspRI | CASTG | 1 cut(s) | 1545 |
| Vha464I | CTTAAG | 1 cut(s) | 719 |
| VpaK11BI | GGWCC | 1 cut(s) | 1519 |
| XapI | RAATTY | 4 cut(s) | 269, 927, 1070, 1153 |
| XceI | RCATGY | 1 cut(s) | 90 |
| XmiI | GTMKAC | 2 cut(s) | 1059, 1242 |
| XmnI | GAANNNNTTC | 1 cut(s) | 332 |
| XspI | CTAG | 4 cut(s) | 282, 315, 699, 1106 |