RchiOBHm_Chr5g0049261

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003942
Physical Location & Seq
Reverse (-)
46799453 .. 46801105
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32693

Sequence Viewer

Length: 1653 bp
ATGGAGTTGGACAGAATAAGCAACTTACCAAGTAATGTTACACAACAAATTTTGTCATATTTGCCGATCAAGGATGCAGGGAAGACAAGTATGTTATCAAAAGACTGGAGGTTCAAATGGGCTATGCTTCCTTCTCTTGTTTTTGATCATGAAATAGATGACGTGGACAGTGTGGATCACGTTCTCTTACTTCACCCTGGTCCCATATTCTCTTTCAAGCTTTCTGCACAAAACATTATGGACAAAAGTGCTATTAACCGATGGATTCGTCATCTATCAAGACAACCTATCAGACAGTTCATACTGAAAGGGTGTTATAATTTTTATAGTAATAGGCGACCTTACGATGTATCTTCCTCTTTGTTTTCTTGTCAAGATTTGACTCATTTAGAGTTAAGCGATTGTTCGCTAAGACTCCCGTGGACTTTCAATGGCTTCAGGATGTTGAGGACCCTTAATATTAAGAGAGTTACTGTGGCCCGAGATGAATTGGAAAAGATGATTGTTTGTAGTCCTTTGCTTGAGAGATTAACTCTACGTGACTTACAGGGTATCACCCGTCTCAAGATTCACGCACCAAATCTCCAATTCCTTAAAGTTCGAGGAGATTTTGAAGATGTTGAACTTACGAATACCTTGAATCTTGTTCATGTTTCACTTGACCGAAATAGGGCTCATTGGAGAGGGGACAGACTGCTCAACTCTTGTGTTAAGTTGCCTTATATCAAAAGGCTCACAATTGAGGGTTGCATTTTAGAGTCTGCTACTGGTTCCTTGCCGAAGGAGCTGCGTAGACCATGTCTATATCTGAACTTTCTTTCTATAAACATACGCTTGAATAACTTGGAGGAGATTTCAACTGTTATGTGCCTTCTCAGAAGCTCACCTGCTCTGCAGGAACTAGAAATTTCAGTTCGCCAACAATATGAGGAGGCTACTACCGCTAGAGAAGCAACTCCTTGGTTAAATGACAACCAGAATTGGGAATTCAGCAAACTGCAACGTGTGAAAGTAACCGGCTTCTCTGGTGCCCAAGCTGAAGTAGACTTCATCAAATTTCTGTTTTTAAGCTCCCCTGCTCTCCAAGAACTAGAAGTTTCAGTTTACCAAAAAGACGAGACTGTTGTAGGAGAAGTGGACTATTCTTGGTTAAATAACGACCAAAATTTTGCACACACCCAACTGCGACTTTTGAAAGTAACCGACTTTTGTGGTGAAGTAGAATTCATCAAGTTTCTGCTTTTAAGCTCCCCTGCTCTTCAAGAACTACATATTTTGTTTAGAGAGAATGATCATAAGAACAAGATAAGAAACAAGTGGTTAGACGATGCTGCTATGGGAGATGAGGACAACCGGAATTGCACATTCACCCAACTTCGAGTTATGAACATTAGTGGCTTTTTTGGTGCCAAAGCTGAAGTAGGTTTCATCAGATTTTTGCTTACAAGTTCACCTATGCTTGAGAGGATAACTCTTCAACCTGCTTCTGCCAAAGTTCCTTGGGAAGTAAGTAAGCTGTTGAACGAGTTCAAGTCCAACTCGGTACATACAAATTTGAAGTTGTTGGACCCATTAAATCCTTCTGCTGACTACCACTCCCGAGGCTCTAGATGTAGAACCCCACTTTGTTCTGACTACTCCTGTTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

550

Amino Acids

63.55

Weight (kDa)

7.55

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 45 5.5e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 77 - 200 6.4e-12 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 86 - 303 1.2e-15 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 191 - 374 7.7e-10 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AarI CACCTGC 1 cut(s) 895
Acc36I ACCTGC 2 cut(s) 895, 1489
AccB1I GGYRCC 2 cut(s) 1028, 1406
AccI GTMKAC 2 cut(s) 793, 1044
AciI CCGC 1 cut(s) 942
AclWI GGATC 1 cut(s) 183
AcsI RAATTY 7 cut(s) 48, 906, 986, 1055, 1165, 1223, 1552
AcuI CTGAAG 3 cut(s) 421, 1059, 1437
AfaI GTAC 1 cut(s) 1545
AfiI CCNNNNNNNGG 2 cut(s) 670, 982
AflIII ACRYGT 1 cut(s) 1003
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 8 cut(s) 220, 787, 882, 1037, 1071, 1248, 1415, 1516
AluI AGCT 8 cut(s) 220, 787, 882, 1037, 1071, 1248, 1415, 1516
Alw26I GTCTC 2 cut(s) 566, 1112
AlwI GGATC 1 cut(s) 183
Ama87I CYCGRG 2 cut(s) 480, 1599
AoxI GGCC 1 cut(s) 477
ApeKI GCWGC 2 cut(s) 787, 1331
ApoI RAATTY 7 cut(s) 48, 906, 986, 1055, 1165, 1223, 1552
ArsI GACNNNNNNTTYG 2 cut(s) 1151, 1183
Asp700I GAANNNNTTC 1 cut(s) 1526
AspS9I GGNCC 4 cut(s) 200, 450, 478, 1567
AsuHPI GGTGA 6 cut(s) 185, 547, 876, 1226, 1360, 1443
AvaI CYCGRG 2 cut(s) 480, 1599
AvaII GGWCC 3 cut(s) 200, 450, 1567
BaeGI GKGCMC 1 cut(s) 1033
BanI GGYRCC 2 cut(s) 1028, 1406
BanII GRGCYC 1 cut(s) 676
BbsI GAAGAC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 774, 1318
BccI CCATC 1 cut(s) 255
BcgI CGANNNNNNTGC 2 cut(s) 769, 803
BciT130I CCWGG 1 cut(s) 198
BclI TGATCA 2 cut(s) 145, 1291
BcoDI GTCTC 2 cut(s) 566, 1112
BfaI CTAG 4 cut(s) 902, 945, 1091, 1608
BfmI CTRYAG 1 cut(s) 893
BfuAI ACCTGC 2 cut(s) 895, 1489
BisI GCNGC 2 cut(s) 788, 1332
BlsI GCNGC 2 cut(s) 789, 1333
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 3 cut(s) 200, 450, 1567
BmeT110I CYCGRG 2 cut(s) 480, 1599
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 4 cut(s) 200, 450, 478, 1567
BmiI GGNNCC 6 cut(s) 202, 452, 772, 1030, 1408, 1569
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 64, 1318
BpiI GAAGAC 1 cut(s) 89
BplI GAGNNNNNCTC 4 cut(s) 517, 549, 1456, 1488
BpmI CTGGAG 1 cut(s) 127
BpuEI CTTGAG 3 cut(s) 542, 548, 1481
BsaAI YACGTR 1 cut(s) 539
BsaJI CCNNGG 5 cut(s) 196, 419, 959, 1499, 1600
BsaWI WCCGGW 1 cut(s) 1353
BsaXI ACNNNNNCTCC 4 cut(s) 567, 597, 1580, 1610
Bsc4I CCNNNNNNNGG 2 cut(s) 670, 982
Bse118I RCCGGY 1 cut(s) 1016
Bse1I ACTGG 2 cut(s) 110, 772
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 5 cut(s) 196, 419, 959, 1499, 1600
BseGI GGATG 2 cut(s) 79, 447
BseLI CCNNNNNNNGG 2 cut(s) 670, 982
BseMII CTCAG 1 cut(s) 889
BseNI ACTGG 2 cut(s) 110, 772
BseRI GAGGAG 3 cut(s) 618, 863, 944
BseSI GKGCMC 1 cut(s) 1033
BseXI GCAGC 2 cut(s) 774, 1318
BsgI GTGCAG 1 cut(s) 210
BshFI GGCC 1 cut(s) 479
BshNI GGYRCC 2 cut(s) 1028, 1406
BsiHKCI CYCGRG 2 cut(s) 480, 1599
BsiSI CCGG 2 cut(s) 1017, 1354
BslFI GGGAC 2 cut(s) 186, 701
BslI CCNNNNNNNGG 2 cut(s) 670, 982
BsmAI GTCTC 2 cut(s) 566, 1112
BsmBI CGTCTC 1 cut(s) 566
BsmFI GGGAC 2 cut(s) 186, 701
BsnI GGCC 1 cut(s) 479
BsoBI CYCGRG 2 cut(s) 480, 1599
Bsp1286I GDGCHC 2 cut(s) 676, 1033
Bsp143I GATC 4 cut(s) 66, 145, 175, 1291
BspACI CCGC 1 cut(s) 942
BspANI GGCC 1 cut(s) 479
BspCNI CTCAG 1 cut(s) 888
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 6 cut(s) 202, 452, 772, 1030, 1408, 1569
BspMAI CTGCAG 1 cut(s) 897
BspMI ACCTGC 2 cut(s) 895, 1489
BspPI GGATC 1 cut(s) 183
BspQI GCTCTTC 1 cut(s) 1263
BspT107I GGYRCC 2 cut(s) 1028, 1406
BsrFI RCCGGY 1 cut(s) 1016
BsrI ACTGG 2 cut(s) 110, 772
BssAI RCCGGY 1 cut(s) 1016
BssECI CCNNGG 5 cut(s) 196, 419, 959, 1499, 1600
BssMI GATC 4 cut(s) 66, 145, 175, 1291
BssT1I CCWWGG 2 cut(s) 959, 1499
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 5 cut(s) 170, 297, 475, 862, 1123
Bst6I CTCTTC 2 cut(s) 1263, 1479
BstBAI YACGTR 1 cut(s) 539
BstDEI CTNAG 2 cut(s) 410, 875
BstDSI CCRYGG 1 cut(s) 419
BstF5I GGATG 2 cut(s) 79, 447
BstKTI GATC 4 cut(s) 69, 148, 178, 1294
BstMAI GTCTC 2 cut(s) 566, 1112
BstMBI GATC 4 cut(s) 66, 145, 175, 1291
BstMWI GCNNNNNNNGC 3 cut(s) 784, 941, 950
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 893
BstSLI GKGCMC 1 cut(s) 1033
BstV1I GCAGC 2 cut(s) 774, 1318
BstV2I GAAGAC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 479
BtgI CCRYGG 1 cut(s) 419
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 2 cut(s) 79, 447
BtsIMutI CAGTG 1 cut(s) 175
BveI ACCTGC 2 cut(s) 895, 1489
CciI TCATGA 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 1016
Cfr13I GGNCC 4 cut(s) 200, 450, 478, 1567
Csp6I GTAC 1 cut(s) 1544
CviAII CATG 3 cut(s) 149, 650, 798
CviQI GTAC 1 cut(s) 1544
DdeI CTNAG 2 cut(s) 410, 875
DpnI GATC 4 cut(s) 68, 147, 177, 1293
DpnII GATC 4 cut(s) 66, 145, 175, 1291
Eam1104I CTCTTC 2 cut(s) 1263, 1479
EarI CTCTTC 2 cut(s) 1263, 1479
Eco130I CCWWGG 2 cut(s) 959, 1499
Eco24I GRGCYC 1 cut(s) 676
Eco47I GGWCC 3 cut(s) 200, 450, 1567
Eco57I CTGAAG 3 cut(s) 421, 1059, 1437
Eco88I CYCGRG 2 cut(s) 480, 1599
EcoO109I RGGNCCY 1 cut(s) 450
EcoRI GAATTC 2 cut(s) 986, 1223
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 959, 1499
EcoT38I GRGCYC 1 cut(s) 676
ErhI CCWWGG 2 cut(s) 959, 1499
Esp3I CGTCTC 1 cut(s) 566
FaeI CATG 3 cut(s) 152, 653, 801
FaqI GGGAC 2 cut(s) 186, 701
FatI CATG 3 cut(s) 148, 649, 797
FbaI TGATCA 2 cut(s) 145, 1291
FblI GTMKAC 2 cut(s) 793, 1044
Fnu4HI GCNGC 2 cut(s) 788, 1332
FokI GGATG 2 cut(s) 86, 454
FriOI GRGCYC 1 cut(s) 676
Fsp4HI GCNGC 2 cut(s) 788, 1332
FspBI CTAG 4 cut(s) 902, 945, 1091, 1608
GluI GCNGC 2 cut(s) 788, 1332
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 1 cut(s) 479
HapII CCGG 2 cut(s) 1017, 1354
Hin1II CATG 3 cut(s) 152, 653, 801
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 6 cut(s) 265, 382, 414, 568, 640, 758
HpaII CCGG 2 cut(s) 1017, 1354
HphI GGTGA 6 cut(s) 185, 547, 876, 1226, 1360, 1443
Hpy166II GTNNAC 7 cut(s) 166, 423, 794, 1045, 1105, 1138, 1451
Hpy188I TCNGA 5 cut(s) 293, 810, 878, 1433, 1633
Hpy188III TCNNGA 8 cut(s) 149, 279, 374, 439, 565, 1262, 1599, 1608
Hpy8I GTNNAC 7 cut(s) 166, 423, 794, 1045, 1105, 1138, 1451
HpyAV CCTTC 4 cut(s) 141, 775, 881, 1590
HpyCH4III ACNGT 5 cut(s) 170, 297, 475, 862, 1123
HpyCH4IV ACGT 4 cut(s) 162, 180, 538, 1003
HpyCH4V TGCA 7 cut(s) 77, 227, 750, 895, 1000, 1172, 1362
HpyF10VI GCNNNNNNNGC 3 cut(s) 784, 941, 950
HpyF3I CTNAG 2 cut(s) 410, 875
HpySE526I ACGT 4 cut(s) 162, 180, 538, 1003
Hsp92II CATG 3 cut(s) 152, 653, 801
Ksp22I TGATCA 2 cut(s) 145, 1291
Kzo9I GATC 4 cut(s) 66, 145, 175, 1291
LguI GCTCTTC 1 cut(s) 1263
LmnI GCTCC 3 cut(s) 784, 1076, 1253
Lsp1109I GCAGC 2 cut(s) 774, 1318
LweI GCATC 2 cut(s) 64, 1318
MaeI CTAG 4 cut(s) 902, 945, 1091, 1608
MaeII ACGT 4 cut(s) 162, 180, 538, 1003
MaeIII GTNAC 5 cut(s) 37, 469, 539, 1012, 1198
MalI GATC 4 cut(s) 68, 147, 177, 1293
MboI GATC 4 cut(s) 66, 145, 175, 1291
MboII GAAGA 5 cut(s) 94, 345, 626, 1250, 1466
MfeI CAATTG 1 cut(s) 738
MhlI GDGCHC 2 cut(s) 676, 1033
MlyI GAGTC 3 cut(s) 376, 408, 767
MmeI TCCRAC 2 cut(s) 1545, 1560
MroXI GAANNNNTTC 1 cut(s) 1526
MspI CCGG 2 cut(s) 1017, 1354
MspR9I CCNGG 1 cut(s) 198
MunI CAATTG 1 cut(s) 738
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 784, 941, 950
NdeII GATC 4 cut(s) 66, 145, 175, 1291
NlaIII CATG 3 cut(s) 152, 653, 801
NlaIV GGNNCC 6 cut(s) 202, 452, 772, 1030, 1408, 1569
NmuCI GTSAC 1 cut(s) 539
PagI TCATGA 1 cut(s) 148
PaqCI CACCTGC 1 cut(s) 895
PciSI GCTCTTC 1 cut(s) 1263
PdmI GAANNNNTTC 1 cut(s) 1526
PfeI GAWTC 3 cut(s) 265, 568, 640
PflFI GACNNNGTC 1 cut(s) 798
PkrI GCNGC 2 cut(s) 789, 1333
PleI GAGTC 3 cut(s) 376, 408, 766
PpsI GAGTC 3 cut(s) 376, 408, 766
Ppu21I YACGTR 1 cut(s) 539
PpuMI RGGWCCY 1 cut(s) 450
PsiI TTATAA 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 6 cut(s) 202, 452, 772, 1030, 1408, 1569
PspPI GGNCC 4 cut(s) 200, 450, 478, 1567
PspPPI RGGWCCY 1 cut(s) 450
PstI CTGCAG 1 cut(s) 897
PsyI GACNNNGTC 1 cut(s) 798
RsaI GTAC 1 cut(s) 1545
RsaNI GTAC 1 cut(s) 1544
SapI GCTCTTC 1 cut(s) 1263
SatI GCNGC 2 cut(s) 788, 1332
Sau3AI GATC 4 cut(s) 66, 145, 175, 1291
Sau96I GGNCC 4 cut(s) 200, 450, 478, 1567
SchI GAGTC 3 cut(s) 376, 408, 767
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 2 cut(s) 676, 1033
SfaNI GCATC 2 cut(s) 64, 1318
SfcI CTRYAG 1 cut(s) 893
SinI GGWCC 3 cut(s) 200, 450, 1567
SmlI CTYRAG 3 cut(s) 521, 563, 1460
SmoI CTYRAG 3 cut(s) 521, 563, 1460
SsiI CCGC 1 cut(s) 942
SspI AATATT 1 cut(s) 460
SspMI CTAG 4 cut(s) 902, 945, 1091, 1608
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 2 cut(s) 959, 1499
TaaI ACNGT 5 cut(s) 170, 297, 475, 862, 1123
TaiI ACGT 4 cut(s) 165, 183, 541, 1006
TaqI TCGA 2 cut(s) 601, 1378
TaqII GACCGA 1 cut(s) 678
TfiI GAWTC 3 cut(s) 265, 568, 640
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 2 cut(s) 787, 1331
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 8 cut(s) 165, 289, 501, 638, 1039, 1216, 1400, 1417
TspRI CASTG 1 cut(s) 175
Tth111I GACNNNGTC 1 cut(s) 798
VpaK11BI GGWCC 3 cut(s) 200, 450, 1567
XapI RAATTY 7 cut(s) 48, 906, 986, 1055, 1165, 1223, 1552
XbaI TCTAGA 1 cut(s) 1607
XmiI GTMKAC 2 cut(s) 793, 1044
XmnI GAANNNNTTC 1 cut(s) 1526
XspI CTAG 4 cut(s) 902, 945, 1091, 1608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.