Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003942

Physical Location & Seq

Genomic Coordinates Reverse (-)

16160586 .. 16162567

Gene Structure 1982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGCAGACAGAGCCGCCACCAATCTTTTTAAAGAAGAAACAGAGGATGAAGCTGGACAGAATAAGCAACTTAGAAGACGATGTTATACAACAAATCTTGTCATGTTTGCCGATCAGGGACGCAGTGAGGACAAGAATTTTATCGCGTACCTGGAAGTCCAACTGTGATAATCTTCCATGTCTTGTATTTGATGATCGGTGTTGTCTCTCGGATCAAACCGGCACGAAGAGGAAGAGGGAAACCACGCTTGAGAACATTGTTGATTATGTTCTGGTATCCCAAATTGGCTCCATACACACCTTCAAGATTTCTTGTCGAAATAAGCCTCTAGCTGCTGCGGATATCGATAGATGGATTTATCGTCTATCAAAATCCTCTTTGAAGAAGTGTACACTGGAGCTGTGGAGGGGTCCTCCTTACAATGTCTCTTCGAGTTTGTTTTTGTGTCAGGATTTGATTCATTTAGAGTTACATAGTTGTCTGCTTAAACCCCCGTCGACCTTCAAAGGCTTCTGGAAATTGAAGACCTTAAATATTCAAATGGTTACCATTACGCAAGACATGTTCGAAAAGATGATTGCTTGCTCCCCTCTGCTTGAGAAACTGATTTTATGTGACTTTGCTGGTATCAAAACTCTCAACATCGATGCACCAAAACTCCAATACCTTAAGGTCGAAGGTGCTTTTGAGGATGTTGACATTGGGGTGAATACCTTAAACCTTGTTCATGTGTCAATTGAACAACAAAAGGCAGCTTCTATCAGTTGTACCAATTTCTTCAAGTTCTTTTCTCAACTGACTCGTATCGAAAGTCTCTCAATTGATGGTTTTTTCCTACAGTCTTCTGTTGGTGCCTTGCAAGAGGAGCTGCTGAAACCATATCTATGTCTCAAGTCTCTTTGCTTAGGCATACGCTTGAATAATTTAGATGAGACTTTAGCTGCTGTACACCTTCTGAGAAGCTCTCCGGTAAAAGAACTAGAAATTTCGGCTTGGCAGCAAGATGGGGCTATTAGGAGAAAAGTGAGCTCTTGGTTAGGCGACAGCCAGAATTGGGCTTTCAACCAACTACGAGTTGTGAAATTAATTGACATTTCTGGTGTCAAAGCTGAATTAGCACTCATCAGATTTCTGCTTCTCAAATCACCTGTCCTTGAGAAGATGATTGTTCGGCCTCTTCACCTTACTGGCAATCGTGCTTTAACAAAGAAGCTGCTCCAGTTTAGGCGTGCGTCGGGGAAAGCAGAGATAAAGTACTTGGATCCATTAAAGCATGTGCCTGCTAATGCTGGTTCAAATCAAAGGCAAGCTAATGCTCATGCCGATTATGAGTCTGACTTTAGCTCGTTGTCTGACTCTAGCTCGTCGTCTGACTCTAGCTCTTCATCCGATTCGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

466

Amino Acids

52.6

Weight (kDa)

8.94

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	21 - 60	8.1e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	100 - 262	2.8e-12	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	116 - 323	9.3e-11	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25150 FvH4_5g01320 FvH4_5g01330 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560
rosa_chinensis	RchiOBHm_Chr5g0049261 RchiOBHm_Chr7g0188631 RchiOBHm_Chr7g0199601
rosa_laevigata	RLG00000003784 RLG00000004676 RLG00000034607
rosa_multiflora	Rmu_co8228169.1_g000001 Rmu_sc0005358.1_g000008 Rmu_sc0009191.1_g000012 Rmu_sc0018006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032400 Rroxscaffold_3G00256570 Rroxscaffold_3G00256590 Rroxscaffold_3G00266180
rosa_rugosa	Rorug05G0246700 Rorug06G0491900 Rorug07G0055400
rosa_samantha	Rh5BG334700 Rh5DG346800 Rh7CG099700 Rh7CG189900 Rh7CG190000 Rh7DG098800
rosa_wichuraiana	Rw7G008360 Rw7G015840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	851
AccI	GTMKAC	1 cut(s)	497
AccII	CGCG	1 cut(s)	145
AciI	CCGC	2 cut(s)	14, 338
AclWI	GGATC	3 cut(s)	219, 1256, 1269
AcsI	RAATTY	2 cut(s)	135, 984
AfaI	GTAC	5 cut(s)	148, 391, 769, 948, 1256
AfiI	CCNNNNNNNGG	1 cut(s)	1054
AflII	CTTAAG	1 cut(s)	668
AflIII	ACRYGT	1 cut(s)	561
AjnI	CCWGG	1 cut(s)	149
Alw21I	GWGCWC	1 cut(s)	1031
Alw26I	GTCTC	6 cut(s)	209, 430, 818, 893, 900, 926
AlwI	GGATC	3 cut(s)	219, 1256, 1269
AoxI	GGCC	1 cut(s)	1172
ApeKI	GCWGC	7 cut(s)	332, 335, 752, 868, 941, 997, 1213
ApoI	RAATTY	2 cut(s)	135, 984
ArsI	GACNNNNNNTTYG	2 cut(s)	1134, 1166
AseI	ATTAAT	1 cut(s)	1085
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	3 cut(s)	718, 1137, 1172
AsuII	TTCGAA	1 cut(s)	567
AvaII	GGWCC	1 cut(s)	410
BamHI	GGATCC	1 cut(s)	1261
BanI	GGYRCC	1 cut(s)	851
BanII	GRGCYC	1 cut(s)	1031
BbsI	GAAGAC	3 cut(s)	81, 530, 834
Bbv12I	GWGCWC	1 cut(s)	1031
BbvI	GCAGC	7 cut(s)	319, 322, 764, 855, 928, 1009, 1200
BccI	CCATC	3 cut(s)	345, 818, 998
BciT130I	CCWGG	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	286
BcoDI	GTCTC	6 cut(s)	209, 430, 818, 893, 900, 926
BfaI	CTAG	4 cut(s)	329, 980, 1359, 1377
BfmI	CTRYAG	1 cut(s)	836
BfrI	CTTAAG	1 cut(s)	668
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	8 cut(s)	14, 333, 336, 753, 869, 942, 998, 1214
BlsI	GCNGC	8 cut(s)	15, 334, 337, 754, 870, 943, 999, 1215
BmcAI	AGTACT	1 cut(s)	1256
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	4 cut(s)	289, 411, 853, 1263
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	637
BpiI	GAAGAC	3 cut(s)	81, 530, 834
BplI	GAGNNNNNCTC	4 cut(s)	397, 429, 949, 981
BpmI	CTGGAG	2 cut(s)	416, 1202
Bpu10I	CCTNAGC	1 cut(s)	904
Bpu14I	TTCGAA	1 cut(s)	567
BpuEI	CTTGAG	4 cut(s)	269, 617, 875, 1175
Bsa29I	ATCGAT	2 cut(s)	345, 645
BsaWI	WCCGGW	1 cut(s)	967
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	1054
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	3 cut(s)	399, 1192, 1219
BseBI	CCWGG	1 cut(s)	151
BseCI	ATCGAT	2 cut(s)	345, 645
BseGI	GGATG	3 cut(s)	51, 697, 1385
BseLI	CCNNNNNNNGG	1 cut(s)	1054
BseMII	CTCAG	1 cut(s)	947
BseNI	ACTGG	3 cut(s)	399, 1192, 1219
BseRI	GAGGAG	1 cut(s)	878
BseXI	GCAGC	7 cut(s)	319, 322, 764, 855, 928, 1009, 1200
Bsh1236I	CGCG	1 cut(s)	145
BshFI	GGCC	1 cut(s)	1174
BshNI	GGYRCC	1 cut(s)	851
BshVI	ATCGAT	2 cut(s)	345, 645
BsiHKAI	GWGCWC	1 cut(s)	1031
BsiSI	CCGG	2 cut(s)	219, 968
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	1054
BsmAI	GTCTC	6 cut(s)	209, 430, 818, 893, 900, 926
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	1174
Bsp119I	TTCGAA	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	1031
Bsp1407I	TGTACA	2 cut(s)	389, 946
Bsp143I	GATC	4 cut(s)	111, 193, 211, 1261
BspACI	CCGC	2 cut(s)	14, 338
BspANI	GGCC	1 cut(s)	1174
BspCNI	CTCAG	1 cut(s)	948
BspDI	ATCGAT	2 cut(s)	345, 645
BspFNI	CGCG	1 cut(s)	145
BspLI	GGNNCC	4 cut(s)	289, 411, 853, 1263
BspPI	GGATC	3 cut(s)	219, 1256, 1269
BspQI	GCTCTTC	1 cut(s)	1387
BspT104I	TTCGAA	1 cut(s)	567
BspT107I	GGYRCC	1 cut(s)	851
BspTI	CTTAAG	1 cut(s)	668
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	2 cut(s)	389, 946
BsrI	ACTGG	3 cut(s)	399, 1192, 1219
BssAI	RCCGGY	1 cut(s)	218
BssMI	GATC	4 cut(s)	111, 193, 211, 1261
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	164, 840
Bst6I	CTCTTC	5 cut(s)	221, 227, 433, 1182, 1387
BstAFI	CTTAAG	1 cut(s)	668
BstAUI	TGTACA	2 cut(s)	389, 946
BstBI	TTCGAA	1 cut(s)	567
BstC8I	GCNNGC	4 cut(s)	583, 1230, 1281, 1308
BstDEI	CTNAG	3 cut(s)	70, 904, 956
BstEII	GGTNACC	1 cut(s)	544
BstF5I	GGATG	3 cut(s)	51, 697, 1385
BstFNI	CGCG	1 cut(s)	145
BstKTI	GATC	4 cut(s)	114, 196, 214, 1264
BstMAI	GTCTC	6 cut(s)	209, 430, 818, 893, 900, 926
BstMBI	GATC	4 cut(s)	111, 193, 211, 1261
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 865, 1115
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	2 cut(s)	565, 1277
BstPI	GGTNACC	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	836
BstUI	CGCG	1 cut(s)	145
BstV1I	GCAGC	7 cut(s)	319, 322, 764, 855, 928, 1009, 1200
BstV2I	GAAGAC	3 cut(s)	81, 530, 834
BstX2I	RGATCY	1 cut(s)	1261
BstYI	RGATCY	1 cut(s)	1261
Bsu15I	ATCGAT	2 cut(s)	345, 645
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	1174
BsuTUI	ATCGAT	2 cut(s)	345, 645
BtsCI	GGATG	3 cut(s)	51, 697, 1385
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	2 cut(s)	129, 392
Cac8I	GCNNGC	4 cut(s)	583, 1230, 1281, 1308
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	410
ClaI	ATCGAT	2 cut(s)	345, 645
CseI	GACGC	2 cut(s)	128, 1221
Csp6I	GTAC	5 cut(s)	147, 390, 768, 947, 1255
CviAII	CATG	6 cut(s)	102, 177, 562, 728, 1274, 1319
CviQI	GTAC	5 cut(s)	147, 390, 768, 947, 1255
DdeI	CTNAG	3 cut(s)	70, 904, 956
DpnI	GATC	4 cut(s)	113, 195, 213, 1263
DpnII	GATC	4 cut(s)	111, 193, 211, 1261
DraI	TTTAAA	1 cut(s)	30
Eam1104I	CTCTTC	5 cut(s)	221, 227, 433, 1182, 1387
EarI	CTCTTC	5 cut(s)	221, 227, 433, 1182, 1387
Ecl136II	GAGCTC	1 cut(s)	1029
Eco24I	GRGCYC	1 cut(s)	1031
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	1029
Eco91I	GGTNACC	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	1029
EcoO109I	RGGNCCY	1 cut(s)	410
EcoO65I	GGTNACC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	149
EcoRV	GATATC	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	1031
FaeI	CATG	6 cut(s)	105, 180, 565, 731, 1277, 1322
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	6 cut(s)	101, 176, 561, 727, 1273, 1318
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	8 cut(s)	14, 333, 336, 753, 869, 942, 998, 1214
FokI	GGATG	3 cut(s)	58, 704, 1372
FriOI	GRGCYC	1 cut(s)	1031
Fsp4HI	GCNGC	8 cut(s)	14, 333, 336, 753, 869, 942, 998, 1214
FspBI	CTAG	4 cut(s)	329, 980, 1359, 1377
GluI	GCNGC	8 cut(s)	14, 333, 336, 753, 869, 942, 998, 1214
GsuI	CTGGAG	2 cut(s)	416, 1202
HaeIII	GGCC	1 cut(s)	1174
HapII	CCGG	2 cut(s)	219, 968
HgaI	GACGC	2 cut(s)	128, 1221
Hin1II	CATG	6 cut(s)	105, 180, 565, 731, 1277, 1322
HincII	GTYRAC	2 cut(s)	498, 697
HindII	GTYRAC	2 cut(s)	498, 697
HinfI	GANTC	6 cut(s)	457, 799, 1331, 1355, 1373, 1391
HpaII	CCGG	2 cut(s)	219, 968
HphI	GGTGA	3 cut(s)	718, 1137, 1172
Hpy166II	GTNNAC	5 cut(s)	390, 392, 498, 697, 949
Hpy188I	TCNGA	8 cut(s)	211, 957, 1127, 1336, 1354, 1372, 1390, 1396
Hpy188III	TCNNGA	3 cut(s)	304, 449, 514
Hpy8I	GTNNAC	5 cut(s)	390, 392, 498, 697, 949
Hpy99I	CGWCG	3 cut(s)	499, 1237, 1369
HpyAV	CCTTC	4 cut(s)	310, 511, 671, 962
HpyCH4III	ACNGT	2 cut(s)	164, 840
HpyCH4V	TGCA	3 cut(s)	4, 650, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 865, 1115
HpyF3I	CTNAG	3 cut(s)	70, 904, 956
Hsp92II	CATG	6 cut(s)	105, 180, 565, 731, 1277, 1322
Kzo9I	GATC	4 cut(s)	111, 193, 211, 1261
LguI	GCTCTTC	1 cut(s)	1387
LmnI	GCTCC	5 cut(s)	293, 397, 590, 865, 1221
Lsp1109I	GCAGC	7 cut(s)	319, 322, 764, 855, 928, 1009, 1200
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	4 cut(s)	329, 980, 1359, 1377
MaeIII	GTNAC	3 cut(s)	468, 544, 614
MalI	GATC	4 cut(s)	113, 195, 213, 1263
MboI	GATC	4 cut(s)	111, 193, 211, 1261
MfeI	CAATTG	2 cut(s)	735, 819
MflI	RGATCY	1 cut(s)	1261
MhlI	GDGCHC	1 cut(s)	1031
MlyI	GAGTC	4 cut(s)	793, 1340, 1349, 1367
MmeI	TCCRAC	1 cut(s)	183
MseI	TTAA	8 cut(s)	29, 486, 530, 669, 716, 1085, 1202, 1268
MslI	CAYNNNNRTG	2 cut(s)	704, 883
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	2 cut(s)	219, 968
MspR9I	CCNGG	1 cut(s)	151
MunI	CAATTG	2 cut(s)	735, 819
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	145
MwoI	GCNNNNNNNGC	3 cut(s)	10, 865, 1115
NdeII	GATC	4 cut(s)	111, 193, 211, 1261
NlaIII	CATG	6 cut(s)	105, 180, 565, 731, 1277, 1322
NlaIV	GGNNCC	4 cut(s)	289, 411, 853, 1263
NmuCI	GTSAC	1 cut(s)	614
NspI	RCATGY	2 cut(s)	565, 1277
NspV	TTCGAA	1 cut(s)	567
PciI	ACATGT	1 cut(s)	561
PciSI	GCTCTTC	1 cut(s)	1387
PfeI	GAWTC	2 cut(s)	457, 1391
PkrI	GCNGC	8 cut(s)	15, 334, 337, 754, 870, 943, 999, 1215
PleI	GAGTC	4 cut(s)	793, 1339, 1349, 1367
PpsI	GAGTC	4 cut(s)	793, 1339, 1349, 1367
PpuMI	RGGWCCY	1 cut(s)	410
PscI	ACATGT	1 cut(s)	561
PshBI	ATTAAT	1 cut(s)	1085
Psp124BI	GAGCTC	1 cut(s)	1031
Psp5II	RGGWCCY	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	149
PspEI	GGTNACC	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	4 cut(s)	289, 411, 853, 1263
PspPI	GGNCC	1 cut(s)	410
PspPPI	RGGWCCY	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	1261
RsaI	GTAC	5 cut(s)	148, 391, 769, 948, 1256
RsaNI	GTAC	5 cut(s)	147, 390, 768, 947, 1255
RseI	CAYNNNNRTG	2 cut(s)	704, 883
SacI	GAGCTC	1 cut(s)	1031
SalI	GTCGAC	1 cut(s)	496
SapI	GCTCTTC	1 cut(s)	1387
SaqAI	TTAA	8 cut(s)	29, 486, 530, 669, 716, 1085, 1202, 1268
SatI	GCNGC	8 cut(s)	14, 333, 336, 753, 869, 942, 998, 1214
Sau3AI	GATC	4 cut(s)	111, 193, 211, 1261
Sau96I	GGNCC	1 cut(s)	410
ScaI	AGTACT	1 cut(s)	1256
SchI	GAGTC	4 cut(s)	793, 1340, 1349, 1367
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	1031
SfaNI	GCATC	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	836
SfuI	TTCGAA	1 cut(s)	567
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	2 cut(s)	704, 883
SmlI	CTYRAG	5 cut(s)	248, 596, 668, 890, 1154
SmoI	CTYRAG	5 cut(s)	248, 596, 668, 890, 1154
SsiI	CCGC	2 cut(s)	14, 338
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	4 cut(s)	329, 980, 1359, 1377
SstI	GAGCTC	1 cut(s)	1031
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	164, 840
TaqI	TCGA	8 cut(s)	316, 345, 431, 497, 567, 645, 675, 807
TatI	WGTACW	3 cut(s)	389, 946, 1254
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	2 cut(s)	457, 1391
Tru1I	TTAA	8 cut(s)	29, 486, 530, 669, 716, 1085, 1202, 1268
Tru9I	TTAA	8 cut(s)	29, 486, 530, 669, 716, 1085, 1202, 1268
TscAI	CASTG	2 cut(s)	129, 399
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	7 cut(s)	332, 335, 752, 868, 941, 997, 1213
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	4 cut(s)	62, 449, 716, 1374
TspRI	CASTG	2 cut(s)	129, 399
Vha464I	CTTAAG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	410
VspI	ATTAAT	1 cut(s)	1085
XapI	RAATTY	2 cut(s)	135, 984
XceI	RCATGY	2 cut(s)	565, 1277
XmiI	GTMKAC	1 cut(s)	497
XspI	CTAG	4 cut(s)	329, 980, 1359, 1377
ZrmI	AGTACT	1 cut(s)	1256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.