Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018006.1

Orthogroup ID

OG0003942

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1214

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018006.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1213 bp

atgattgtttgtagtcctttgcttgagagattaactctacgtgacttacagggtatcgcccgtctcaagattcacgcaccgaatctccaattccttgaagttcgaggagattttgaagatgttaaacttacgaataccttgaatcttgttcatgtttcacttgaccgaaattgggctcatgggagaggggacagactgctcaactcgtgtgttaagttgccttatatcaaaaggctcacaattgagggttgcattttagagtgtgctactggttccttgccgaaggagctgcgtagaccatgtctatatctgaactttctttctataaacatacgcttgaataacttggaggagatttcaactgctatgtgccttctcagaggctcacctgctctgcaggaactagaaatttcagttcgccaacaatatgaggaggctactaccgctagagaagcaactccttggttaaatgacaaccagaattgggaattcagcatactgcaacgtgtgaaagtaaccggcttctctggtgcccaagctgaagtagacttcatcaaatttctgtttttaagctcccctgctctccaagaactagaagtttcagtttaccaaaaagacgagactgttgtaggagaagtggactattcttggttaaataacgacagaggctcacctgctctgcaggaactagaaatttcagttcgccaacaatatgaggaggctactaccgctagagaagcaactccttggttaaatgacaaccagaattgggaattcagcatactgcaacgtgtgaaagtaaccggcttctctggtgcccaagctgaagtagacttcatcaaatttctgtttttaagctcccctgctctccaagaactagaagtttcagtttaccaaaaagacgagactgttgtaggagaagtggagtattcttggttaaataacgaccaaaattttgcacacacccaactgcgacttttgaaagtaaccgacttttgtggtgaagtagaattcatcaagtttctgcttttaagctcccctgctcttcaagaactacatattttgtttagagagaataatcataagaacaagataagaaacaagtggttagacgatgctgctatgggagatgtggacaaccggaattgcacattcacccaacttcgagttatgaacattattggcttttctggtgccaaagctgaagtaggtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

404

Amino Acids

46.18

Weight (kDa)

5.07

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25150 FvH4_5g01320 FvH4_5g01330 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560
rosa_chinensis	RchiOBHm_Chr5g0049261 RchiOBHm_Chr7g0188631 RchiOBHm_Chr7g0199601
rosa_laevigata	RLG00000003784 RLG00000004676 RLG00000034607
rosa_multiflora	Rmu_co8228169.1_g000001 Rmu_sc0005358.1_g000008 Rmu_sc0009191.1_g000012 Rmu_sc0018006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032400 Rroxscaffold_3G00256570 Rroxscaffold_3G00256590 Rroxscaffold_3G00266180
rosa_rugosa	Rorug05G0246700 Rorug06G0491900 Rorug07G0055400
rosa_samantha	Rh5BG334700 Rh5DG346800 Rh7CG099700 Rh7CG189900 Rh7CG190000 Rh7DG098800
rosa_wichuraiana	Rw7G008360 Rw7G015840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	397, 682
Acc36I	ACCTGC	2 cut(s)	397, 682
AccB1I	GGYRCC	3 cut(s)	530, 815, 1193
AccI	GTMKAC	3 cut(s)	295, 546, 831
AciI	CCGC	2 cut(s)	444, 729
AcsI	RAATTY	8 cut(s)	408, 488, 557, 693, 773, 842, 952, 1010
AcuI	CTGAAG	2 cut(s)	561, 846
AfiI	CCNNNNNNNGG	3 cut(s)	172, 484, 769
AflIII	ACRYGT	2 cut(s)	505, 790
AgsI	TTSAA	7 cut(s)	98, 116, 142, 340, 360, 982, 1049
AluBI	AGCT	7 cut(s)	289, 539, 573, 824, 858, 1035, 1202
AluI	AGCT	7 cut(s)	289, 539, 573, 824, 858, 1035, 1202
Alw26I	GTCTC	3 cut(s)	68, 614, 899
ApeKI	GCWGC	2 cut(s)	289, 1118
ApoI	RAATTY	8 cut(s)	408, 488, 557, 693, 773, 842, 952, 1010
ArsI	GACNNNNNNTTYG	2 cut(s)	938, 970
AsuHPI	GGTGA	4 cut(s)	378, 663, 1013, 1147
BaeGI	GKGCMC	2 cut(s)	535, 820
BanI	GGYRCC	3 cut(s)	530, 815, 1193
BanII	GRGCYC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	276, 1105
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BcoDI	GTCTC	3 cut(s)	68, 614, 899
BfaI	CTAG	6 cut(s)	404, 447, 593, 689, 732, 878
BfmI	CTRYAG	2 cut(s)	395, 680
BfuAI	ACCTGC	2 cut(s)	397, 682
BisI	GCNGC	2 cut(s)	290, 1119
BlsI	GCNGC	2 cut(s)	291, 1120
BmiI	GGNNCC	4 cut(s)	274, 532, 817, 1195
BmsI	GCATC	1 cut(s)	1105
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpuEI	CTTGAG	2 cut(s)	44, 50
BsaAI	YACGTR	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	461, 746
BsaWI	WCCGGW	1 cut(s)	1140
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 484, 769
Bse118I	RCCGGY	2 cut(s)	518, 803
Bse1I	ACTGG	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	461, 746
BseLI	CCNNNNNNNGG	3 cut(s)	172, 484, 769
BseMII	CTCAG	1 cut(s)	391
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	4 cut(s)	120, 365, 446, 731
BseSI	GKGCMC	2 cut(s)	535, 820
BseXI	GCAGC	2 cut(s)	276, 1105
BshNI	GGYRCC	3 cut(s)	530, 815, 1193
BsiSI	CCGG	3 cut(s)	519, 804, 1141
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	3 cut(s)	172, 484, 769
BsmAI	GTCTC	3 cut(s)	68, 614, 899
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	203
Bsp1286I	GDGCHC	3 cut(s)	178, 535, 820
BspACI	CCGC	2 cut(s)	444, 729
BspCNI	CTCAG	1 cut(s)	390
BspLI	GGNNCC	4 cut(s)	274, 532, 817, 1195
BspMAI	CTGCAG	2 cut(s)	399, 684
BspMI	ACCTGC	2 cut(s)	397, 682
BspQI	GCTCTTC	1 cut(s)	1050
BspT107I	GGYRCC	3 cut(s)	530, 815, 1193
BsrFI	RCCGGY	2 cut(s)	518, 803
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	2 cut(s)	518, 803
BssECI	CCNNGG	2 cut(s)	461, 746
BssSI	CACGAG	1 cut(s)	205
BssT1I	CCWWGG	2 cut(s)	461, 746
Bst2BI	CACGAG	1 cut(s)	205
Bst4CI	ACNGT	2 cut(s)	625, 910
Bst6I	CTCTTC	1 cut(s)	1050
BstBAI	YACGTR	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	377
BstMAI	GTCTC	3 cut(s)	68, 614, 899
BstMWI	GCNNNNNNNGC	5 cut(s)	286, 443, 452, 728, 737
BstSFI	CTRYAG	2 cut(s)	395, 680
BstSLI	GKGCMC	2 cut(s)	535, 820
BstV1I	GCAGC	2 cut(s)	276, 1105
BveI	ACCTGC	2 cut(s)	397, 682
Cfr10I	RCCGGY	2 cut(s)	518, 803
CviAII	CATG	3 cut(s)	152, 179, 300
DdeI	CTNAG	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	1050
EarI	CTCTTC	1 cut(s)	1050
Eco130I	CCWWGG	2 cut(s)	461, 746
Eco24I	GRGCYC	1 cut(s)	178
Eco57I	CTGAAG	2 cut(s)	561, 846
EcoRI	GAATTC	3 cut(s)	488, 773, 1010
EcoT14I	CCWWGG	2 cut(s)	461, 746
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	2 cut(s)	461, 746
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	3 cut(s)	155, 182, 303
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	3 cut(s)	151, 178, 299
FblI	GTMKAC	3 cut(s)	295, 546, 831
Fnu4HI	GCNGC	2 cut(s)	290, 1119
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	290, 1119
FspBI	CTAG	6 cut(s)	404, 447, 593, 689, 732, 878
GluI	GCNGC	2 cut(s)	290, 1119
HapII	CCGG	3 cut(s)	519, 804, 1141
Hin1II	CATG	3 cut(s)	155, 182, 303
HinfI	GANTC	3 cut(s)	70, 82, 142
HpaII	CCGG	3 cut(s)	519, 804, 1141
HphI	GGTGA	4 cut(s)	378, 663, 1013, 1147
Hpy166II	GTNNAC	7 cut(s)	296, 547, 607, 640, 832, 892, 1135
Hpy188I	TCNGA	2 cut(s)	312, 380
Hpy188III	TCNNGA	2 cut(s)	67, 1049
Hpy8I	GTNNAC	7 cut(s)	296, 547, 607, 640, 832, 892, 1135
HpyAV	CCTTC	2 cut(s)	277, 383
HpyCH4III	ACNGT	2 cut(s)	625, 910
HpyCH4IV	ACGT	3 cut(s)	40, 505, 790
HpyCH4V	TGCA	7 cut(s)	252, 397, 502, 682, 787, 959, 1149
HpyF10VI	GCNNNNNNNGC	5 cut(s)	286, 443, 452, 728, 737
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	3 cut(s)	40, 505, 790
Hsp92II	CATG	3 cut(s)	155, 182, 303
LguI	GCTCTTC	1 cut(s)	1050
LmnI	GCTCC	4 cut(s)	286, 578, 863, 1040
Lsp1109I	GCAGC	2 cut(s)	276, 1105
LweI	GCATC	1 cut(s)	1105
MaeI	CTAG	6 cut(s)	404, 447, 593, 689, 732, 878
MaeII	ACGT	3 cut(s)	40, 505, 790
MaeIII	GTNAC	4 cut(s)	41, 514, 799, 985
MboII	GAAGA	2 cut(s)	128, 1037
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	3 cut(s)	178, 535, 820
MspI	CCGG	3 cut(s)	519, 804, 1141
MunI	CAATTG	1 cut(s)	240
MwoI	GCNNNNNNNGC	5 cut(s)	286, 443, 452, 728, 737
NlaIII	CATG	3 cut(s)	155, 182, 303
NlaIV	GGNNCC	4 cut(s)	274, 532, 817, 1195
NmuCI	GTSAC	1 cut(s)	41
PaqCI	CACCTGC	2 cut(s)	397, 682
PciSI	GCTCTTC	1 cut(s)	1050
PfeI	GAWTC	3 cut(s)	70, 82, 142
PflFI	GACNNNGTC	1 cut(s)	300
PkrI	GCNGC	2 cut(s)	291, 1120
Ppu21I	YACGTR	1 cut(s)	41
PspN4I	GGNNCC	4 cut(s)	274, 532, 817, 1195
PstI	CTGCAG	2 cut(s)	399, 684
PsyI	GACNNNGTC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	1050
SatI	GCNGC	2 cut(s)	290, 1119
SduI	GDGCHC	3 cut(s)	178, 535, 820
SfaNI	GCATC	1 cut(s)	1105
SfcI	CTRYAG	2 cut(s)	395, 680
SmlI	CTYRAG	2 cut(s)	23, 65
SmoI	CTYRAG	2 cut(s)	23, 65
SsiI	CCGC	2 cut(s)	444, 729
SspMI	CTAG	6 cut(s)	404, 447, 593, 689, 732, 878
StyI	CCWWGG	2 cut(s)	461, 746
TaaI	ACNGT	2 cut(s)	625, 910
TaiI	ACGT	3 cut(s)	43, 508, 793
TaqI	TCGA	2 cut(s)	103, 1165
TaqII	GACCGA	1 cut(s)	180
TfiI	GAWTC	3 cut(s)	70, 82, 142
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	2 cut(s)	289, 1118
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	5 cut(s)	140, 541, 826, 1003, 1187
Tth111I	GACNNNGTC	1 cut(s)	300
XapI	RAATTY	8 cut(s)	408, 488, 557, 693, 773, 842, 952, 1010
XmiI	GTMKAC	3 cut(s)	295, 546, 831
XspI	CTAG	6 cut(s)	404, 447, 593, 689, 732, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.