Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003942

Physical Location & Seq

Genomic Coordinates Reverse (-)

815067 .. 817654

Gene Structure 2588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGACAGAATAAGCAACTTACCAATTGATCTCAAACACAAAATTTTGTGTAAGTTGTCCATCAAGGAGGCAGTGAGGACAACTGTTTTATCAAGAAGCTGGAAGCACAGTTGCGATATGCTCCCACATCTTGTGTTTGATGATCGATGTTGCGTCTCATATGTAAACGAGGATGAAAAAACCAAGAGGAAGAGAGAAACAAAATTCTATCACATTGTTGATCAAGTTCTTTCACTTCAAGAAAATAATACCTCCCTAGTCACCTTCAAGCTTTCTCATCGAAATGAGCACGTTGGCACTCAGCATATAGATAGATGGATTCGTCATTTATCGAGAACCTCAGTCAGAGTGGTGGCACTGAAACAGTGGCGTGGGTCTCTTTACCATGTCTCTTCAAGACTGTTTTCGTGTCGAGATTTACAACATTTAGAGTTTTTCGGTTGTTCTCTCAAAATCCCGTCCTCATTTGAAGGGTTTGGAAAATTGAGTAGCCTTGATATTCAAAAGTCTACTATTGAGGAAGGTGGTCTTGAAAAATTGATTAGTTGCTGTCCTCTGCTGGAGACCCTGATTGTGATTAATTGTGATGGTATCGCTCATCTCAGCATTGATGCACCAAATCTCAAATACCTTGATATAGCCGGTGCTTTCGAGTATCTTAACATTGAGAATTCCTTGAATCTTTGGTATGTTGGGATAAGCCAACTAGAAGCTTCTGGGAGCTTTAAGAATTTGCTAACATATTTAGTTCAACTGAGTTGTCTCAAAAGGCTCAAAATTCAAGGTTATTTTCTACAGCGTGTTCTTTACTCCTTGGACGAAGAGCTGCCGAAACCAAATCTTTGTCTGAAATATCTTTGTCTCTGCATATGCTTGACTAGTGTGCATGAGATTATAGCAGCTATACACATTCTAAGAAGTTTACCTGCCCTTGAAGACCTAGAACTTTCGGTTCGCCAAGGAGATGGGCCTGCTTTTCCTCCTGGAGGAATAAACTCTTGGTTGAATGAGAACCAGAACTGGGACAAATTCAGCCAACTGAAGAGGGTGAAAGTAGCCAGCTTCTCTGCTGGTGCCAGAAGTGAAGTAGATTTTATTAAATATCTGCTTCTAAGCTCTCCTGCTCTTCAGGAACTAGAAATTACGGCCCGGAAACCTGATCCAGCGATAGGAAAATCAGAGTCGTTGTTAGATGACTTCCAGAAATGCAAATTCACCAAACTGCGAGTTGTGATACTAAGCGGCATTTCAGGTGTTGAATCTGAAATAGGTCTCGTCACATTTCTGCTACGATGTTCACCTCGGCTTCAGAAGATGACTATCCAGCCTGGTTCCATTAGTAGTTATTGTGAGCGTGAGGTATTTAGAGAGTTACTCAATCTTAGGAGCGCCTCTCGCAGAGCAGTGATAGAGTACTTGGACCCTATGACGGAATCCGAATCTCAATCCGAATCCGAATCTGAATCTGAATCTGACTCAGACTCAGACTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

499

Amino Acids

56.49

Weight (kDa)

6.52

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 42	3.2e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	90 - 385	1.7e-16	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	103 - 313	7.2e-14	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25150 FvH4_5g01320 FvH4_5g01330 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560
rosa_chinensis	RchiOBHm_Chr5g0049261 RchiOBHm_Chr7g0188631 RchiOBHm_Chr7g0199601
rosa_laevigata	RLG00000003784 RLG00000004676 RLG00000034607
rosa_multiflora	Rmu_co8228169.1_g000001 Rmu_sc0005358.1_g000008 Rmu_sc0009191.1_g000012 Rmu_sc0018006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032400 Rroxscaffold_3G00256570 Rroxscaffold_3G00256590 Rroxscaffold_3G00266180
rosa_rugosa	Rorug05G0246700 Rorug06G0491900 Rorug07G0055400
rosa_samantha	Rh5BG334700 Rh5DG346800 Rh7CG099700 Rh7CG189900 Rh7CG190000 Rh7DG098800
rosa_wichuraiana	Rw7G008360 Rw7G015840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	934
AccB1I	GGYRCC	1 cut(s)	1073
AccI	GTMKAC	1 cut(s)	509
AciI	CCGC	1 cut(s)	1242
AclWI	GGATC	1 cut(s)	1154
AcsI	RAATTY	7 cut(s)	42, 203, 670, 730, 777, 1028, 1211
AcuI	CTGAAG	3 cut(s)	1061, 1112, 1292
AfaI	GTAC	1 cut(s)	1415
AfiI	CCNNNNNNNGG	4 cut(s)	986, 1021, 1169, 1429
AhlI	ACTAGT	1 cut(s)	878
AjnI	CCWGG	2 cut(s)	982, 1327
AjuI	GAANNNNNNNTTGG	2 cut(s)	982, 1014
AluBI	AGCT	8 cut(s)	99, 271, 713, 723, 826, 902, 1062, 1116
AluI	AGCT	8 cut(s)	99, 271, 713, 723, 826, 902, 1062, 1116
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	7 cut(s)	160, 381, 394, 557, 767, 866, 1277
AlwI	GGATC	1 cut(s)	1154
AoxI	GGCC	2 cut(s)	968, 1146
ApeKI	GCWGC	2 cut(s)	826, 899
ApoI	RAATTY	7 cut(s)	42, 203, 670, 730, 777, 1028, 1211
AseI	ATTAAT	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	1391
AspS9I	GGNCC	3 cut(s)	968, 1147, 1420
AsuC2I	CCSGG	1 cut(s)	1150
AsuHPI	GGTGA	4 cut(s)	253, 1060, 1207, 1290
AvaII	GGWCC	1 cut(s)	1420
BanI	GGYRCC	1 cut(s)	1073
BbsI	GAAGAC	1 cut(s)	942
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	813, 911
BccI	CCATC	4 cut(s)	68, 309, 581, 959
BceAI	ACGGC	1 cut(s)	1161
BciT130I	CCWGG	2 cut(s)	984, 1329
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	1150
BcoDI	GTCTC	7 cut(s)	160, 381, 394, 557, 767, 866, 1277
BcuI	ACTAGT	1 cut(s)	878
BfaI	CTAG	5 cut(s)	257, 707, 879, 941, 1136
BfmI	CTRYAG	1 cut(s)	794
BfoI	RGCGCY	1 cut(s)	1392
BfuAI	ACCTGC	1 cut(s)	934
BisI	GCNGC	3 cut(s)	827, 900, 1243
BlsI	GCNGC	3 cut(s)	828, 901, 1244
BmcAI	AGTACT	1 cut(s)	1415
Bme1390I	CCNGG	3 cut(s)	984, 1150, 1329
Bme18I	GGWCC	1 cut(s)	1420
BmgT120I	GGNCC	3 cut(s)	968, 1147, 1420
BmiI	GGNNCC	3 cut(s)	1075, 1333, 1422
BmrFI	CCNGG	3 cut(s)	984, 1150, 1329
BmrI	ACTGGG	1 cut(s)	1030
BmsI	GCATC	1 cut(s)	601
BmuI	ACTGGG	1 cut(s)	1030
BpiI	GAAGAC	1 cut(s)	942
BplI	GAGNNNNNCTC	4 cut(s)	1359, 1391, 1378, 1410
BpmI	CTGGAG	2 cut(s)	581, 1005
BpuMI	CCSGG	1 cut(s)	1150
Bsa29I	ATCGAT	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	1319
BsaI	GGTCTC	3 cut(s)	381, 557, 1277
BsaJI	CCNNGG	3 cut(s)	813, 958, 1301
Bsc4I	CCNNNNNNNGG	4 cut(s)	986, 1021, 1169, 1429
Bse118I	RCCGGY	1 cut(s)	641
Bse1I	ACTGG	1 cut(s)	1025
Bse8I	GATNNNNATC	1 cut(s)	1319
BseBI	CCWGG	2 cut(s)	984, 1329
BseCI	ATCGAT	1 cut(s)	145
BseDI	CCNNGG	3 cut(s)	813, 958, 1301
BseGI	GGATG	1 cut(s)	178
BseJI	GATNNNNATC	1 cut(s)	1319
BseLI	CCNNNNNNNGG	4 cut(s)	986, 1021, 1169, 1429
BseMII	CTCAG	6 cut(s)	314, 354, 616, 746, 1491, 1497
BseNI	ACTGG	1 cut(s)	1025
BseXI	GCAGC	2 cut(s)	813, 911
BshFI	GGCC	2 cut(s)	970, 1148
BshNI	GGYRCC	1 cut(s)	1073
BshVI	ATCGAT	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	2 cut(s)	642, 1150
BslFI	GGGAC	1 cut(s)	1037
BslI	CCNNNNNNNGG	4 cut(s)	986, 1021, 1169, 1429
BsmAI	GTCTC	7 cut(s)	160, 381, 394, 557, 767, 866, 1277
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	1037
BsnI	GGCC	2 cut(s)	970, 1148
Bso31I	GGTCTC	3 cut(s)	381, 557, 1277
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	28, 142, 220, 1159
BspACI	CCGC	1 cut(s)	1242
BspANI	GGCC	2 cut(s)	970, 1148
BspCNI	CTCAG	6 cut(s)	313, 353, 615, 747, 1490, 1496
BspDI	ATCGAT	1 cut(s)	145
BspLI	GGNNCC	3 cut(s)	1075, 1333, 1422
BspMI	ACCTGC	1 cut(s)	934
BspPI	GGATC	1 cut(s)	1154
BspQI	GCTCTTC	2 cut(s)	816, 1131
BspT107I	GGYRCC	1 cut(s)	1073
BspTNI	GGTCTC	3 cut(s)	381, 557, 1277
BsrFI	RCCGGY	1 cut(s)	641
BsrI	ACTGG	1 cut(s)	1025
BssAI	RCCGGY	1 cut(s)	641
BssECI	CCNNGG	3 cut(s)	813, 958, 1301
BssMI	GATC	4 cut(s)	28, 142, 220, 1159
BssT1I	CCWWGG	2 cut(s)	813, 958
Bst2UI	CCWGG	2 cut(s)	984, 1329
Bst4CI	ACNGT	4 cut(s)	85, 110, 366, 402
Bst6I	CTCTTC	5 cut(s)	185, 397, 816, 1037, 1131
BstC8I	GCNNGC	2 cut(s)	972, 1060
BstENI	CCTNNNNNAGG	1 cut(s)	984
BstF5I	GGATG	1 cut(s)	178
BstH2I	RGCGCY	1 cut(s)	1392
BstHHI	GCGC	1 cut(s)	1391
BstKTI	GATC	4 cut(s)	31, 145, 223, 1162
BstMAI	GTCTC	7 cut(s)	160, 381, 394, 557, 767, 866, 1277
BstMBI	GATC	4 cut(s)	28, 142, 220, 1159
BstMWI	GCNNNNNNNGC	1 cut(s)	1395
BstNI	CCWGG	2 cut(s)	984, 1329
BstSCI	CCNGG	3 cut(s)	982, 1148, 1327
BstSFI	CTRYAG	1 cut(s)	794
BstV1I	GCAGC	2 cut(s)	813, 911
BstV2I	GAAGAC	1 cut(s)	942
BstXI	CCANNNNNNTGG	1 cut(s)	965
Bsu15I	ATCGAT	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	970, 1148
BsuTUI	ATCGAT	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	2 cut(s)	78, 1410
BtsIMutI	CAGTG	4 cut(s)	78, 356, 371, 1410
BveI	ACCTGC	1 cut(s)	934
Cac8I	GCNNGC	2 cut(s)	972, 1060
CfoI	GCGC	1 cut(s)	1391
Cfr10I	RCCGGY	1 cut(s)	641
Cfr13I	GGNCC	3 cut(s)	968, 1147, 1420
ClaI	ATCGAT	1 cut(s)	145
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	1414
CviAII	CATG	2 cut(s)	386, 887
CviQI	GTAC	1 cut(s)	1414
DpnI	GATC	4 cut(s)	30, 144, 222, 1161
DpnII	GATC	4 cut(s)	28, 142, 220, 1159
Eam1104I	CTCTTC	5 cut(s)	185, 397, 816, 1037, 1131
EarI	CTCTTC	5 cut(s)	185, 397, 816, 1037, 1131
Eco130I	CCWWGG	2 cut(s)	813, 958
Eco31I	GGTCTC	3 cut(s)	381, 557, 1277
Eco47I	GGWCC	1 cut(s)	1420
Eco57I	CTGAAG	3 cut(s)	1061, 1112, 1292
EcoNI	CCTNNNNNAGG	1 cut(s)	984
EcoRI	GAATTC	1 cut(s)	670
EcoRII	CCWGG	2 cut(s)	982, 1327
EcoT14I	CCWWGG	2 cut(s)	813, 958
ErhI	CCWWGG	2 cut(s)	813, 958
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	2 cut(s)	389, 890
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FaqI	GGGAC	1 cut(s)	1037
FatI	CATG	2 cut(s)	385, 886
FauNDI	CATATG	2 cut(s)	160, 869
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	509
Fnu4HI	GCNGC	3 cut(s)	827, 900, 1243
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	3 cut(s)	827, 900, 1243
FspBI	CTAG	5 cut(s)	257, 707, 879, 941, 1136
GlaI	GCGC	1 cut(s)	1390
GluI	GCNGC	3 cut(s)	827, 900, 1243
GsuI	CTGGAG	2 cut(s)	581, 1005
HaeII	RGCGCY	1 cut(s)	1392
HaeIII	GGCC	2 cut(s)	970, 1148
HapII	CCGG	2 cut(s)	642, 1150
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	1391
Hin1II	CATG	2 cut(s)	389, 890
Hin6I	GCGC	1 cut(s)	1389
HinP1I	GCGC	1 cut(s)	1389
HindIII	AAGCTT	2 cut(s)	269, 711
HpaII	CCGG	2 cut(s)	642, 1150
HphI	GGTGA	4 cut(s)	253, 1060, 1207, 1290
Hpy166II	GTNNAC	4 cut(s)	166, 510, 923, 1298
Hpy188III	TCNNGA	8 cut(s)	93, 239, 333, 396, 413, 530, 1130, 1201
Hpy8I	GTNNAC	4 cut(s)	166, 510, 923, 1298
HpyAV	CCTTC	3 cut(s)	274, 464, 515
HpyCH4III	ACNGT	4 cut(s)	85, 110, 366, 402
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	4 cut(s)	614, 867, 886, 1209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1395
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	389, 890
HspAI	GCGC	1 cut(s)	1389
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	28, 142, 220, 1159
LguI	GCTCTTC	2 cut(s)	816, 1131
LmnI	GCTCC	3 cut(s)	126, 720, 1386
Lsp1109I	GCAGC	2 cut(s)	813, 911
LweI	GCATC	1 cut(s)	601
MaeI	CTAG	5 cut(s)	257, 707, 879, 941, 1136
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	3 cut(s)	259, 1276, 1371
MalI	GATC	4 cut(s)	30, 144, 222, 1161
MboI	GATC	4 cut(s)	28, 142, 220, 1159
MboII	GAAGA	7 cut(s)	202, 384, 833, 947, 1054, 1118, 1324
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	291
MlyI	GAGTC	4 cut(s)	1190, 1469, 1475, 1481
MseI	TTAA	4 cut(s)	579, 660, 726, 1098
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	2 cut(s)	642, 1150
MspR9I	CCNGG	3 cut(s)	984, 1150, 1329
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	2 cut(s)	984, 1329
MwoI	GCNNNNNNNGC	1 cut(s)	1395
NciI	CCSGG	1 cut(s)	1150
NdeI	CATATG	2 cut(s)	160, 869
NdeII	GATC	4 cut(s)	28, 142, 220, 1159
NlaIII	CATG	2 cut(s)	389, 890
NlaIV	GGNNCC	3 cut(s)	1075, 1333, 1422
NmeAIII	GCCGAG	1 cut(s)	1282
NmuCI	GTSAC	2 cut(s)	259, 1276
PciSI	GCTCTTC	2 cut(s)	816, 1131
PfeI	GAWTC	9 cut(s)	319, 679, 1259, 1433, 1439, 1451, 1457, 1463, 1469
PfoI	TCCNGGA	1 cut(s)	982
PkrI	GCNGC	3 cut(s)	828, 901, 1244
PleI	GAGTC	4 cut(s)	1189, 1469, 1475, 1481
PpsI	GAGTC	4 cut(s)	1189, 1469, 1475, 1481
PshBI	ATTAAT	1 cut(s)	579
Psp6I	CCWGG	2 cut(s)	982, 1327
PspGI	CCWGG	2 cut(s)	982, 1327
PspN4I	GGNNCC	3 cut(s)	1075, 1333, 1422
PspPI	GGNCC	3 cut(s)	968, 1147, 1420
RsaI	GTAC	1 cut(s)	1415
RsaNI	GTAC	1 cut(s)	1414
RseI	CAYNNNNRTG	1 cut(s)	282
SapI	GCTCTTC	2 cut(s)	816, 1131
SaqAI	TTAA	4 cut(s)	579, 660, 726, 1098
SatI	GCNGC	3 cut(s)	827, 900, 1243
Sau3AI	GATC	4 cut(s)	28, 142, 220, 1159
Sau96I	GGNCC	3 cut(s)	968, 1147, 1420
ScaI	AGTACT	1 cut(s)	1415
SchI	GAGTC	4 cut(s)	1190, 1469, 1475, 1481
ScrFI	CCNGG	3 cut(s)	984, 1150, 1329
SduI	GDGCHC	1 cut(s)	291
SfaNI	GCATC	1 cut(s)	601
SfcI	CTRYAG	1 cut(s)	794
SinI	GGWCC	1 cut(s)	1420
SmiMI	CAYNNNNRTG	1 cut(s)	282
SpeI	ACTAGT	1 cut(s)	878
SsiI	CCGC	1 cut(s)	1242
SspMI	CTAG	5 cut(s)	257, 707, 879, 941, 1136
StyD4I	CCNGG	3 cut(s)	982, 1148, 1327
StyI	CCWWGG	2 cut(s)	813, 958
TaaI	ACNGT	4 cut(s)	85, 110, 366, 402
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	5 cut(s)	145, 280, 332, 412, 651
TatI	WGTACW	1 cut(s)	1413
TauI	GCSGC	1 cut(s)	1245
TfiI	GAWTC	9 cut(s)	319, 679, 1259, 1433, 1439, 1451, 1457, 1463, 1469
Tru1I	TTAA	4 cut(s)	579, 660, 726, 1098
Tru9I	TTAA	4 cut(s)	579, 660, 726, 1098
TscAI	CASTG	4 cut(s)	78, 363, 371, 1410
TseFI	GTSAC	2 cut(s)	259, 1276
TseI	GCWGC	2 cut(s)	826, 899
Tsp45I	GTSAC	2 cut(s)	259, 1276
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	1445
TspRI	CASTG	4 cut(s)	78, 363, 371, 1410
VpaK11BI	GGWCC	1 cut(s)	1420
VspI	ATTAAT	1 cut(s)	579
XagI	CCTNNNNNAGG	1 cut(s)	984
XapI	RAATTY	7 cut(s)	42, 203, 670, 730, 777, 1028, 1211
XmiI	GTMKAC	1 cut(s)	509
XspI	CTAG	5 cut(s)	257, 707, 879, 941, 1136
ZrmI	AGTACT	1 cut(s)	1415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.