Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003942

Physical Location & Seq

Genomic Coordinates Reverse (-)

59552875 .. 59555311

Gene Structure 2437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGGAGTTGGACAGAATAAGCAACTTACCTGGTGGTGTTATACAAAAGATTTTGTCATATTTGCCGATCAGGGAGGCGGTGAGGACATGTGTTTTGTCGAGCAACTGGAGGTGCAAATGGGCTATGCTTCCCCGTCTCGTGTTTGATGATCACCAAATCGGAACAACCAGCAAGGCGAGGAGGAGGAAAACTTCATTTGTGAGCATTGTTGATCGTGTTCTGTTACTTCAAATCGGCCCTGTGGATGCTTTTGAGCTTGTTTATCGGAAATTTATAGCCGCTAGTGACGTTGACAGATGGATTCTTCATTTAACAAGAAAATCTTTGAAAGAGTTCACACTCACAAAATCCAGGGGTCTCAGCTTCCGGAGATTGAAGAGCCTTCGGCTTCAAAACATTACTGTTGTCCAAGATGTGTTTGAAAAATTGATTGGTTCCTGCCCCCTGCTTGAGAGGCTGACTCTAATTGACTTGAACGGTATCACCCATCTCAAGATCGATGCACCTAATCTCCAATTCCTTGAAGTCCAAGATACTTTTGAGGATGTTAAGGTTGAGAATACCTTAAATCTGGTTGATGTTTTAATTGATTTTGGTGAAGCTTCTAGCTACTGTAGCAATTTGCTCAAGTATTTTGTTCAGCTACCACTTATGGAAAGGCTTACAATCAAGGGTTTCCTTTCAAAGTGTGCTATTGGTTCCTCGGCAGAGGAGCTGCCAAAACCATGTCAATGTCTGAAGTTCCTTTCTATAGGCATACGCTTGAATAATTTGGAGGAGATATTAGCTGCTATATGCTTTCTGAGAAGCTCACCTGCTCTACAAGAACTCAAAATTTCAGTTCACCAAGAAGGTGAGGCTACTGCTGGAGAAGCGACCTATTGGTTAAATGAAAACCATAATTGGGCATTCACCCAACTGCGACTTATGAAAGTGACTGCATTCTCTGGTGTTAAAGCTGAAGTAGACTTCATCAAATTTCTTCTTTTGAGCTCTCCTGCTCTTGAAGAACTAGAAATTGTGGCACCTTTTGAAGATCAGGCTGTTTCAGGAGAAGTGAATTCTTGGTTAGATGACAACCTGAACTGGGCATTCACCCAACTGCGACTTGTGAAAGTAACTTGCTTCTCTGGTGTGAAAGCTGAGGTAGACTTCATTAAGTTTCTGCTTTTGAGCTCTCCTGCTCTTCAAGAACTACAAATCTCGGCTCGCCATCATGTTGTTCTGGGAGAGGTGAACCCTTGGTCAGATGACAACCAGAATTGTGTATTTACCCATCTACGAGTTGTGCAATTAACAGGCATTCATGGAGTCAAACCTGAAGTAGATTTCATCAGATTTCTGCTTTCAAGTTCACCTGTGCTTGAGAGGATGACTATTCAGCCTACTTCTGTAGATTGTTCTTTGGAGCTGTTAAAGAAATTGGTCCAGTTTAGGCGTGCGTCAGTGGATGCCGAGATAAGCTACATGGATCCATTGAGTTCAGAATCTGATGAGGATTCTGACTTTGATGATGATTATACTGATCTTGAGTCTGATTCAGATTCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

517

Amino Acids

58.55

Weight (kDa)

5.18

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	109 - 340	1.1e-11	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	115 - 279	9.1e-12	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	422 - 460	2.3e-07	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25150 FvH4_5g01320 FvH4_5g01330 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560
rosa_chinensis	RchiOBHm_Chr5g0049261 RchiOBHm_Chr7g0188631 RchiOBHm_Chr7g0199601
rosa_laevigata	RLG00000003784 RLG00000004676 RLG00000034607
rosa_multiflora	Rmu_co8228169.1_g000001 Rmu_sc0005358.1_g000008 Rmu_sc0009191.1_g000012 Rmu_sc0018006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032400 Rroxscaffold_3G00256570 Rroxscaffold_3G00256590 Rroxscaffold_3G00266180
rosa_rugosa	Rorug05G0246700 Rorug06G0491900 Rorug07G0055400
rosa_samantha	Rh5BG334700 Rh5DG346800 Rh7CG099700 Rh7CG189900 Rh7CG190000 Rh7DG098800
rosa_wichuraiana	Rw7G008360 Rw7G015840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	823
Acc36I	ACCTGC	1 cut(s)	823
AccB1I	GGYRCC	1 cut(s)	1024
AccI	GTMKAC	2 cut(s)	966, 1149
AccIII	TCCGGA	1 cut(s)	366
AciI	CCGC	2 cut(s)	77, 279
AclWI	GGATC	2 cut(s)	1466, 1479
AcsI	RAATTY	4 cut(s)	269, 834, 977, 1060
AcuI	CTGAAG	3 cut(s)	758, 981, 1341
AfiI	CCNNNNNNNGG	2 cut(s)	904, 1087
AflIII	ACRYGT	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	28, 350
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
Alw21I	GWGCWC	2 cut(s)	995, 1178
Alw26I	GTCTC	2 cut(s)	140, 362
AlwI	GGATC	2 cut(s)	1466, 1479
AlwNI	CAGNNNCTG	2 cut(s)	1490, 1547
Aor13HI	TCCGGA	1 cut(s)	366
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	2 cut(s)	715, 788
ApoI	RAATTY	4 cut(s)	269, 834, 977, 1060
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
Asp700I	GAANNNNTTC	1 cut(s)	332
AspS9I	GGNCC	2 cut(s)	236, 1426
AvaII	GGWCC	1 cut(s)	1426
BamHI	GGATCC	1 cut(s)	1471
BanI	GGYRCC	1 cut(s)	1024
BanII	GRGCYC	2 cut(s)	995, 1178
BauI	CACGAG	1 cut(s)	137
Bbv12I	GWGCWC	2 cut(s)	995, 1178
BbvCI	CCTCAGC	1 cut(s)	1143
BbvI	GCAGC	2 cut(s)	702, 775
BccI	CCATC	4 cut(s)	291, 495, 1221, 1284
BciT130I	CCWGG	2 cut(s)	30, 352
BclI	TGATCA	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	140, 362
BfaI	CTAG	3 cut(s)	282, 606, 1013
BfmI	CTRYAG	3 cut(s)	613, 750, 1392
BfuAI	ACCTGC	1 cut(s)	823
BisI	GCNGC	3 cut(s)	279, 716, 789
BlsI	GCNGC	3 cut(s)	280, 717, 790
Bme1390I	CCNGG	2 cut(s)	30, 352
Bme18I	GGWCC	1 cut(s)	1426
BmgT120I	GGNCC	2 cut(s)	236, 1426
BmiI	GGNNCC	4 cut(s)	436, 700, 1026, 1473
BmrFI	CCNGG	2 cut(s)	30, 352
BmrI	ACTGGG	1 cut(s)	1096
BmsI	GCATC	3 cut(s)	235, 490, 1441
BmuI	ACTGGG	1 cut(s)	1096
BplI	GAGNNNNNCTC	2 cut(s)	445, 477
BpmI	CTGGAG	2 cut(s)	127, 888
Bpu10I	CCTNAGC	1 cut(s)	1143
BpuEI	CTTGAG	5 cut(s)	470, 476, 611, 1385, 1550
Bsa29I	ATCGAT	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	351, 702, 1241
BsaWI	WCCGGW	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	2 cut(s)	904, 1087
Bse1I	ACTGG	3 cut(s)	110, 1091, 1429
BseAI	TCCGGA	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	30, 352
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	3 cut(s)	351, 702, 1241
BseGI	GGATG	4 cut(s)	250, 550, 1377, 1456
BseLI	CCNNNNNNNGG	2 cut(s)	904, 1087
BseMII	CTCAG	3 cut(s)	373, 794, 1134
BseNI	ACTGG	3 cut(s)	110, 1091, 1429
BseRI	GAGGAG	4 cut(s)	193, 196, 725, 791
BseXI	GCAGC	2 cut(s)	702, 775
BshFI	GGCC	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	1024
BshVI	ATCGAT	1 cut(s)	498
BsiHKAI	GWGCWC	2 cut(s)	995, 1178
BsiSI	CCGG	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	904, 1087
BsmAI	GTCTC	2 cut(s)	140, 362
BsmBI	CGTCTC	1 cut(s)	140
BsmI	GAATGC	4 cut(s)	908, 941, 1091, 1302
BsnI	GGCC	1 cut(s)	237
Bso31I	GGTCTC	1 cut(s)	362
Bsp1286I	GDGCHC	2 cut(s)	995, 1178
Bsp13I	TCCGGA	1 cut(s)	366
Bsp143I	GATC	7 cut(s)	66, 148, 211, 495, 1036, 1471, 1525
BspACI	CCGC	2 cut(s)	77, 279
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	3 cut(s)	372, 795, 1135
BspDI	ATCGAT	1 cut(s)	498
BspEI	TCCGGA	1 cut(s)	366
BspLI	GGNNCC	4 cut(s)	436, 700, 1026, 1473
BspMI	ACCTGC	1 cut(s)	823
BspPI	GGATC	2 cut(s)	1466, 1479
BspQI	GCTCTTC	2 cut(s)	371, 1191
BspT107I	GGYRCC	1 cut(s)	1024
BspTNI	GGTCTC	1 cut(s)	362
BsrI	ACTGG	3 cut(s)	110, 1091, 1429
BssECI	CCNNGG	3 cut(s)	351, 702, 1241
BssMI	GATC	7 cut(s)	66, 148, 211, 495, 1036, 1471, 1525
BssSI	CACGAG	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	1241
Bst2BI	CACGAG	1 cut(s)	137
Bst2UI	CCWGG	2 cut(s)	30, 352
Bst4CI	ACNGT	3 cut(s)	403, 479, 614
Bst6I	CTCTTC	2 cut(s)	371, 1191
BstC8I	GCNNGC	2 cut(s)	1210, 1440
BstDEI	CTNAG	3 cut(s)	359, 803, 1143
BstF5I	GGATG	4 cut(s)	250, 550, 1377, 1456
BstKTI	GATC	7 cut(s)	69, 151, 214, 498, 1039, 1474, 1528
BstMAI	GTCTC	2 cut(s)	140, 362
BstMBI	GATC	7 cut(s)	66, 148, 211, 495, 1036, 1471, 1525
BstMWI	GCNNNNNNNGC	3 cut(s)	454, 615, 872
BstNI	CCWGG	2 cut(s)	30, 352
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	28, 350
BstSFI	CTRYAG	3 cut(s)	613, 750, 1392
BstV1I	GCAGC	2 cut(s)	702, 775
BstX2I	RGATCY	1 cut(s)	1471
BstYI	RGATCY	1 cut(s)	1471
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	1 cut(s)	237
BsuTUI	ATCGAT	1 cut(s)	498
BtsCI	GGATG	4 cut(s)	250, 550, 1377, 1456
BtsIMutI	CAGTG	1 cut(s)	1452
BveI	ACCTGC	1 cut(s)	823
Cac8I	GCNNGC	2 cut(s)	1210, 1440
CaiI	CAGNNNCTG	2 cut(s)	1490, 1547
Cfr13I	GGNCC	2 cut(s)	236, 1426
ClaI	ATCGAT	1 cut(s)	498
CseI	GACGC	1 cut(s)	1431
CsiI	ACCWGGT	1 cut(s)	28
CviAII	CATG	5 cut(s)	87, 726, 1217, 1307, 1468
DdeI	CTNAG	3 cut(s)	359, 803, 1143
DpnI	GATC	7 cut(s)	68, 150, 213, 497, 1038, 1473, 1527
DpnII	GATC	7 cut(s)	66, 148, 211, 495, 1036, 1471, 1525
Eam1104I	CTCTTC	2 cut(s)	371, 1191
EarI	CTCTTC	2 cut(s)	371, 1191
Ecl136II	GAGCTC	2 cut(s)	993, 1176
Eco130I	CCWWGG	1 cut(s)	1241
Eco24I	GRGCYC	2 cut(s)	995, 1178
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	1426
Eco53kI	GAGCTC	2 cut(s)	993, 1176
Eco57I	CTGAAG	3 cut(s)	758, 981, 1341
EcoICRI	GAGCTC	2 cut(s)	993, 1176
EcoRI	GAATTC	1 cut(s)	1060
EcoRII	CCWGG	2 cut(s)	28, 350
EcoT14I	CCWWGG	1 cut(s)	1241
EcoT38I	GRGCYC	2 cut(s)	995, 1178
ErhI	CCWWGG	1 cut(s)	1241
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	5 cut(s)	90, 729, 1220, 1310, 1471
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FatI	CATG	5 cut(s)	86, 725, 1216, 1306, 1467
FbaI	TGATCA	1 cut(s)	148
FblI	GTMKAC	2 cut(s)	966, 1149
Fnu4HI	GCNGC	3 cut(s)	279, 716, 789
FokI	GGATG	4 cut(s)	257, 557, 1384, 1463
FriOI	GRGCYC	2 cut(s)	995, 1178
Fsp4HI	GCNGC	3 cut(s)	279, 716, 789
FspBI	CTAG	3 cut(s)	282, 606, 1013
GluI	GCNGC	3 cut(s)	279, 716, 789
GsuI	CTGGAG	2 cut(s)	127, 888
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	1 cut(s)	367
HgaI	GACGC	1 cut(s)	1431
Hin1II	CATG	5 cut(s)	90, 729, 1220, 1310, 1471
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	600
HinfI	GANTC	8 cut(s)	301, 460, 1311, 1487, 1499, 1532, 1538, 1544
HpaII	CCGG	1 cut(s)	367
Hpy166II	GTNNAC	7 cut(s)	292, 336, 844, 967, 1150, 1237, 1355
Hpy188III	TCNNGA	6 cut(s)	367, 493, 1004, 1050, 1190, 1529
Hpy8I	GTNNAC	7 cut(s)	292, 336, 844, 967, 1150, 1237, 1355
HpyAV	CCTTC	2 cut(s)	392, 845
HpyCH4III	ACNGT	3 cut(s)	403, 479, 614
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	4 cut(s)	114, 503, 941, 1291
HpyF10VI	GCNNNNNNNGC	3 cut(s)	454, 615, 872
HpyF3I	CTNAG	3 cut(s)	359, 803, 1143
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	5 cut(s)	90, 729, 1220, 1310, 1471
Kpn2I	TCCGGA	1 cut(s)	366
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	7 cut(s)	66, 148, 211, 495, 1036, 1471, 1525
LguI	GCTCTTC	2 cut(s)	371, 1191
LmnI	GCTCC	2 cut(s)	712, 1408
Lsp1109I	GCAGC	2 cut(s)	702, 775
LweI	GCATC	3 cut(s)	235, 490, 1441
MabI	ACCWGGT	1 cut(s)	28
MaeI	CTAG	3 cut(s)	282, 606, 1013
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	4 cut(s)	222, 284, 934, 1117
MalI	GATC	7 cut(s)	68, 150, 213, 497, 1038, 1473, 1527
MboI	GATC	7 cut(s)	66, 148, 211, 495, 1036, 1471, 1525
MboII	GAAGA	6 cut(s)	296, 388, 974, 1019, 1046, 1178
MflI	RGATCY	1 cut(s)	1471
MhlI	GDGCHC	2 cut(s)	995, 1178
MlyI	GAGTC	3 cut(s)	454, 1320, 1541
MroI	TCCGGA	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	9 cut(s)	311, 549, 566, 584, 887, 954, 1158, 1295, 1415
MslI	CAYNNNNRTG	1 cut(s)	730
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	2 cut(s)	30, 352
Mva1269I	GAATGC	4 cut(s)	908, 941, 1091, 1302
MvaI	CCWGG	2 cut(s)	30, 352
MwoI	GCNNNNNNNGC	3 cut(s)	454, 615, 872
NdeII	GATC	7 cut(s)	66, 148, 211, 495, 1036, 1471, 1525
NlaIII	CATG	5 cut(s)	90, 729, 1220, 1310, 1471
NlaIV	GGNNCC	4 cut(s)	436, 700, 1026, 1473
NmeAIII	GCCGAG	3 cut(s)	683, 1184, 1480
NmuCI	GTSAC	2 cut(s)	284, 934
NspI	RCATGY	1 cut(s)	90
PaqCI	CACCTGC	1 cut(s)	823
PciI	ACATGT	1 cut(s)	86
PciSI	GCTCTTC	2 cut(s)	371, 1191
PctI	GAATGC	4 cut(s)	908, 941, 1091, 1302
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	5 cut(s)	301, 1487, 1499, 1538, 1544
PkrI	GCNGC	3 cut(s)	280, 717, 790
PleI	GAGTC	3 cut(s)	454, 1319, 1540
PpsI	GAGTC	3 cut(s)	454, 1319, 1540
PscI	ACATGT	1 cut(s)	86
Psp124BI	GAGCTC	2 cut(s)	995, 1178
Psp6I	CCWGG	2 cut(s)	28, 350
PspGI	CCWGG	2 cut(s)	28, 350
PspN4I	GGNNCC	4 cut(s)	436, 700, 1026, 1473
PspPI	GGNCC	2 cut(s)	236, 1426
PstNI	CAGNNNCTG	2 cut(s)	1490, 1547
PsuI	RGATCY	1 cut(s)	1471
RseI	CAYNNNNRTG	1 cut(s)	730
SacI	GAGCTC	2 cut(s)	995, 1178
SapI	GCTCTTC	2 cut(s)	371, 1191
SaqAI	TTAA	9 cut(s)	311, 549, 566, 584, 887, 954, 1158, 1295, 1415
SatI	GCNGC	3 cut(s)	279, 716, 789
Sau3AI	GATC	7 cut(s)	66, 148, 211, 495, 1036, 1471, 1525
Sau96I	GGNCC	2 cut(s)	236, 1426
SchI	GAGTC	3 cut(s)	454, 1320, 1541
ScrFI	CCNGG	2 cut(s)	30, 352
SduI	GDGCHC	2 cut(s)	995, 1178
SexAI	ACCWGGT	1 cut(s)	28
SfaNI	GCATC	3 cut(s)	235, 490, 1441
SfcI	CTRYAG	3 cut(s)	613, 750, 1392
SinI	GGWCC	1 cut(s)	1426
SmiMI	CAYNNNNRTG	1 cut(s)	730
SmlI	CTYRAG	5 cut(s)	449, 491, 626, 1364, 1529
SmoI	CTYRAG	5 cut(s)	449, 491, 626, 1364, 1529
SsiI	CCGC	2 cut(s)	77, 279
SspMI	CTAG	3 cut(s)	282, 606, 1013
SstI	GAGCTC	2 cut(s)	995, 1178
StyD4I	CCNGG	2 cut(s)	28, 350
StyI	CCWWGG	1 cut(s)	1241
TaaI	ACNGT	3 cut(s)	403, 479, 614
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	98, 498
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	5 cut(s)	301, 1487, 1499, 1538, 1544
Tru1I	TTAA	9 cut(s)	311, 549, 566, 584, 887, 954, 1158, 1295, 1415
Tru9I	TTAA	9 cut(s)	311, 549, 566, 584, 887, 954, 1158, 1295, 1415
TscAI	CASTG	1 cut(s)	1452
TseFI	GTSAC	2 cut(s)	284, 934
TseI	GCWGC	2 cut(s)	715, 788
Tsp45I	GTSAC	2 cut(s)	284, 934
TspDTI	ATGAA	8 cut(s)	183, 296, 906, 944, 961, 1144, 1295, 1321
TspRI	CASTG	1 cut(s)	1452
VpaK11BI	GGWCC	1 cut(s)	1426
XapI	RAATTY	4 cut(s)	269, 834, 977, 1060
XceI	RCATGY	1 cut(s)	90
XmiI	GTMKAC	2 cut(s)	966, 1149
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	3 cut(s)	282, 606, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.