Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003942

Physical Location & Seq

Genomic Coordinates Forward (+)

3915525 .. 3918829

Gene Structure 3305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0055400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGATTCCCAGTGCCTCTCAGCCACTGGATCCATAGCTAAACTCAGCAGCTTCACCATTCTGCTTTTATTTTTGGTTTCCTGCCTCACTTTCACTTCTACAGAAGCTTATGATGCGCTTGATCCACTTGGGAATATCACCATTAAATGGGATGTCATTAGCTGGACTCCTGATGGATATGTTGCCGTTGTTACAATGTTCAACTTCCAGCAGTATCGCCATATACAAGCGCCAGGTTGGACGTTAGGATGGACATGGGCAAAGAAGGAAGTAATCTGGAGCATGGTGGGAGCACAAACCACCGAGCAAGGGGACTGTTCAAGATACAAAGGCAATGTACCACATTGCTGTAAGAAGGATCCCACAGTTGTGGATTTGTTACCCGGAACTCCTTATAACCAGCAGATTGCAAATTGCTGCAAAGCAGGGGTTATGCAATCATATATCCAAGACCCAGCGAATGCTGTGAGTTCATTCCAGATCAGTGTGGGTGCTGCAGGAACCACTAACAAGACTGTTAGACTTCCTAAAAACTTCACATTGAAAGCACCAGGGCCTGGATATTCATGTGGCCGAGCAGTGATTGTCAAGCCAACCAGATATTTAACAGCAGATAAAAGAAGAATGACCCAAGCCATGATGACCTGGAATGTTACTTGCACATACTCTCAATTCCTAGCGCAAAAGACACCTACTTGTTGTGTTTCTCTCTCCTCCTTCTATAATGACACCATAGTAAACTGTCCTACTTGTGCATGTGGTTGTGAGAACAACAGTACAGATCCCGGGAGCTGCGTAGAGCCAGACTCTCCGTACTTAGCTTCAGCTGTAGCAGGTTCTGGAAAAGCTACTAATTCTCCGTTGGTCCAGTGTACCAGCCATATGTGTCCAGTGAGAGTCCATTGGCATGTGAAGCTCAATTACAAGGAGTACTGGAGGGTGAAAGTCACAGTTACAAATTTCAATTACAGAATGAACTACACTCTCTGGAATATTGTTGTTCAACATCCCAACTTCGATAATTTGACCAAGATTTTCAGCTTTAATTACAAGGACTTGACTCCTTATGCTGGCTTGAATGATACTGCAATGTTGTGGGGAGTCAAGTTTTATAATGACTTGCTCATGCAAGCTGGTCCTCTTGGAAATGCGCAGTCAGAGCTTCTATTTCGGAAAGATGCGTCAACTTTTACTTTTGAAAAGGGATGGGCTTTCCCTCGAAGGATTTATTTTAACGGTGATAACTGTGTCATGCCACCTCCAGATGCTTATCCGTGGTTGCCAAATGCCAGTCCTAGACCAACCATTTCCCTACTTAGTCCGGTTATAACTATCTTGGCATCTCTGGTATTCTTGTTGTCTTATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

456

Amino Acids

50.69

Weight (kDa)

8.67

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	60 - 223	5.2e-69	COBRA-like protein
COB_C	PF25079	232 - 425	5.6e-62	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25150 FvH4_5g01320 FvH4_5g01330 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560
rosa_chinensis	RchiOBHm_Chr5g0049261 RchiOBHm_Chr7g0188631 RchiOBHm_Chr7g0199601
rosa_laevigata	RLG00000003784 RLG00000004676 RLG00000034607
rosa_multiflora	Rmu_co8228169.1_g000001 Rmu_sc0005358.1_g000008 Rmu_sc0009191.1_g000012 Rmu_sc0018006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032400 Rroxscaffold_3G00256570 Rroxscaffold_3G00256590 Rroxscaffold_3G00266180
rosa_rugosa	Rorug05G0246700 Rorug06G0491900 Rorug07G0055400
rosa_samantha	Rh5BG334700 Rh5DG346800 Rh7CG099700 Rh7CG189900 Rh7CG190000 Rh7DG098800
rosa_wichuraiana	Rw7G008360 Rw7G015840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	396, 1113, 1328
Acc16I	TGCGCA	1 cut(s)	1152
Acc36I	ACCTGC	1 cut(s)	824
AccB7I	CCANNNNNTGG	2 cut(s)	147, 557
AclWI	GGATC	6 cut(s)	24, 37, 116, 353, 366, 776
AcoI	YGGCCR	1 cut(s)	571
AcsI	RAATTY	1 cut(s)	958
AcuI	CTGAAG	1 cut(s)	807
AfaI	GTAC	5 cut(s)	339, 778, 815, 874, 932
AfiI	CCNNNNNNNGG	4 cut(s)	147, 309, 557, 1070
AgsI	TTSAA	7 cut(s)	202, 321, 544, 964, 1004, 1078, 1199
AjnI	CCWGG	4 cut(s)	232, 550, 556, 644
AleI	CACNNNNGTG	1 cut(s)	368
Alw21I	GWGCWC	1 cut(s)	295
AlwI	GGATC	6 cut(s)	24, 37, 116, 353, 366, 776
AlwNI	CAGNNNCTG	3 cut(s)	26, 557, 839
Ama87I	CYCGRG	1 cut(s)	785
AoxI	GGCC	2 cut(s)	554, 571
ApeKI	GCWGC	4 cut(s)	48, 417, 494, 792
ApoI	RAATTY	1 cut(s)	958
AspLEI	GCGC	4 cut(s)	118, 232, 682, 1153
AspS9I	GGNCC	3 cut(s)	554, 865, 1136
AsuC2I	CCSGG	3 cut(s)	384, 786, 787
AsuHPI	GGTGA	4 cut(s)	46, 130, 952, 1250
AvaI	CYCGRG	1 cut(s)	785
AvaII	GGWCC	2 cut(s)	865, 1136
BamHI	GGATCC	2 cut(s)	29, 358
BarI	GAAGNNNNNNTAC	2 cut(s)	905, 937
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	4 cut(s)	60, 404, 481, 779
BccI	CCATC	3 cut(s)	167, 243, 1200
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	4 cut(s)	234, 552, 558, 646
BcnI	CCSGG	3 cut(s)	384, 786, 787
BfaI	CTAG	2 cut(s)	677, 1296
BfmI	CTRYAG	3 cut(s)	99, 495, 828
BfoI	RGCGCY	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	824
BisI	GCNGC	4 cut(s)	49, 418, 495, 793
BlsI	GCNGC	4 cut(s)	50, 419, 496, 794
BmcAI	AGTACT	1 cut(s)	932
Bme1390I	CCNGG	7 cut(s)	234, 384, 552, 558, 646, 786, 787
Bme18I	GGWCC	2 cut(s)	865, 1136
BmeT110I	CYCGRG	1 cut(s)	785
BmgT120I	GGNCC	3 cut(s)	554, 865, 1136
BmiI	GGNNCC	3 cut(s)	31, 360, 502
BmrFI	CCNGG	7 cut(s)	234, 384, 552, 558, 646, 786, 787
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	4 cut(s)	103, 1168, 1255, 1349
BmuI	ACTGGG	1 cut(s)	4
BplI	GAGNNNNNCTC	2 cut(s)	791, 823
BpmI	CTGGAG	3 cut(s)	298, 955, 1245
BpuMI	CCSGG	3 cut(s)	384, 786, 787
BsaBI	GATNNNNATC	1 cut(s)	1269
BsaJI	CCNNGG	3 cut(s)	551, 785, 1274
BsaWI	WCCGGW	1 cut(s)	1321
BsaXI	ACNNNNNCTCC	2 cut(s)	841, 871
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 309, 557, 1070
Bse1I	ACTGG	6 cut(s)	10, 31, 868, 890, 938, 1290
Bse3DI	GCAATG	3 cut(s)	340, 343, 1095
Bse8I	GATNNNNATC	1 cut(s)	1269
BseBI	CCWGG	4 cut(s)	234, 552, 558, 646
BseDI	CCNNGG	3 cut(s)	551, 785, 1274
BseGI	GGATG	4 cut(s)	157, 254, 1006, 1211
BseJI	GATNNNNATC	1 cut(s)	1269
BseLI	CCNNNNNNNGG	4 cut(s)	147, 309, 557, 1070
BseMI	GCAATG	3 cut(s)	340, 343, 1095
BseMII	CTCAG	2 cut(s)	33, 58
BseNI	ACTGG	6 cut(s)	10, 31, 868, 890, 938, 1290
BseRI	GAGGAG	1 cut(s)	703
BseXI	GCAGC	4 cut(s)	60, 404, 481, 779
BseYI	CCCAGC	1 cut(s)	454
BshFI	GGCC	2 cut(s)	556, 573
BsiHKAI	GWGCWC	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	785
BsiSI	CCGG	3 cut(s)	384, 786, 1322
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	4 cut(s)	147, 309, 557, 1070
BsmFI	GGGAC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	556, 573
BsoBI	CYCGRG	1 cut(s)	785
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	5 cut(s)	29, 121, 358, 480, 781
BspANI	GGCC	2 cut(s)	556, 573
BspCNI	CTCAG	2 cut(s)	32, 57
BspLI	GGNNCC	3 cut(s)	31, 360, 502
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	824
BspPI	GGATC	6 cut(s)	24, 37, 116, 353, 366, 776
BsrDI	GCAATG	3 cut(s)	340, 343, 1095
BsrI	ACTGG	6 cut(s)	10, 31, 868, 890, 938, 1290
BssECI	CCNNGG	3 cut(s)	551, 785, 1274
BssMI	GATC	5 cut(s)	29, 121, 358, 480, 781
Bst2UI	CCWGG	4 cut(s)	234, 552, 558, 646
Bst4CI	ACNGT	8 cut(s)	317, 367, 517, 743, 776, 952, 1238, 1247
BstC8I	GCNNGC	2 cut(s)	1072, 1131
BstDEI	CTNAG	4 cut(s)	19, 44, 817, 1316
BstDSI	CCRYGG	1 cut(s)	1274
BstF5I	GGATG	4 cut(s)	157, 254, 1006, 1211
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	4 cut(s)	118, 232, 682, 1153
BstKTI	GATC	5 cut(s)	32, 124, 361, 483, 784
BstMBI	GATC	5 cut(s)	29, 121, 358, 480, 781
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 913, 1159
BstNI	CCWGG	4 cut(s)	234, 552, 558, 646
BstNSI	RCATGY	2 cut(s)	759, 911
BstSCI	CCNGG	7 cut(s)	232, 382, 550, 556, 644, 784, 785
BstSFI	CTRYAG	3 cut(s)	99, 495, 828
BstV1I	GCAGC	4 cut(s)	60, 404, 481, 779
BstX2I	RGATCY	3 cut(s)	29, 358, 781
BstXI	CCANNNNNNTGG	1 cut(s)	370
BstYI	RGATCY	3 cut(s)	29, 358, 781
BsuRI	GGCC	2 cut(s)	556, 573
BtgI	CCRYGG	1 cut(s)	1274
BtsCI	GGATG	4 cut(s)	157, 254, 1006, 1211
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	6 cut(s)	17, 24, 490, 585, 875, 897
BveI	ACCTGC	1 cut(s)	824
Cac8I	GCNNGC	2 cut(s)	1072, 1131
CaiI	CAGNNNCTG	3 cut(s)	26, 557, 839
CfoI	GCGC	4 cut(s)	118, 232, 682, 1153
Cfr13I	GGNCC	3 cut(s)	554, 865, 1136
Cfr9I	CCCGGG	1 cut(s)	785
CseI	GACGC	1 cut(s)	1170
Csp6I	GTAC	5 cut(s)	338, 777, 814, 873, 931
CviAII	CATG	8 cut(s)	255, 283, 567, 637, 756, 908, 1126, 1252
CviQI	GTAC	5 cut(s)	338, 777, 814, 873, 931
DdeI	CTNAG	4 cut(s)	19, 44, 817, 1316
DpnI	GATC	5 cut(s)	31, 123, 360, 482, 783
DpnII	GATC	5 cut(s)	29, 121, 358, 480, 781
EaeI	YGGCCR	1 cut(s)	571
Eco47I	GGWCC	2 cut(s)	865, 1136
Eco57I	CTGAAG	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	785
EcoO109I	RGGNCCY	1 cut(s)	554
EcoRII	CCWGG	4 cut(s)	232, 550, 556, 644
FaeI	CATG	8 cut(s)	258, 286, 570, 640, 759, 911, 1129, 1255
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	8 cut(s)	254, 282, 566, 636, 755, 907, 1125, 1251
FauNDI	CATATG	1 cut(s)	882
Fnu4HI	GCNGC	4 cut(s)	49, 418, 495, 793
FokI	GGATG	4 cut(s)	164, 261, 993, 1218
Fsp4HI	GCNGC	4 cut(s)	49, 418, 495, 793
FspBI	CTAG	2 cut(s)	677, 1296
FspI	TGCGCA	1 cut(s)	1152
GlaI	GCGC	4 cut(s)	117, 231, 681, 1152
GluI	GCNGC	4 cut(s)	49, 418, 495, 793
GsaI	CCCAGC	1 cut(s)	458
GsuI	CTGGAG	3 cut(s)	298, 955, 1245
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	556, 573
HapII	CCGG	3 cut(s)	384, 786, 1322
HgaI	GACGC	1 cut(s)	1170
HhaI	GCGC	4 cut(s)	118, 232, 682, 1153
Hin1II	CATG	8 cut(s)	258, 286, 570, 640, 759, 911, 1129, 1255
Hin6I	GCGC	4 cut(s)	116, 230, 680, 1151
HinP1I	GCGC	4 cut(s)	116, 230, 680, 1151
HincII	GTYRAC	1 cut(s)	1185
HindII	GTYRAC	1 cut(s)	1185
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	6 cut(s)	5, 166, 806, 897, 1060, 1101
HpaII	CCGG	3 cut(s)	384, 786, 1322
HphI	GGTGA	4 cut(s)	46, 130, 952, 1250
Hpy166II	GTNNAC	3 cut(s)	739, 873, 1185
Hpy188I	TCNGA	2 cut(s)	1159, 1173
Hpy188III	TCNNGA	7 cut(s)	170, 277, 321, 478, 840, 988, 1262
Hpy8I	GTNNAC	3 cut(s)	739, 873, 1185
HpyAV	CCTTC	4 cut(s)	259, 349, 727, 1215
HpyCH4III	ACNGT	8 cut(s)	317, 367, 517, 743, 776, 952, 1238, 1247
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	8 cut(s)	410, 420, 436, 497, 660, 755, 1088, 1129
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 913, 1159
HpyF3I	CTNAG	4 cut(s)	19, 44, 817, 1316
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	8 cut(s)	258, 286, 570, 640, 759, 911, 1129, 1255
HspAI	GCGC	4 cut(s)	116, 230, 680, 1151
Kzo9I	GATC	5 cut(s)	29, 121, 358, 480, 781
LmnI	GCTCC	3 cut(s)	279, 290, 789
Lsp1109I	GCAGC	4 cut(s)	60, 404, 481, 779
LweI	GCATC	4 cut(s)	103, 1168, 1255, 1349
MaeI	CTAG	2 cut(s)	677, 1296
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	5 cut(s)	190, 378, 652, 946, 952
MalI	GATC	5 cut(s)	31, 123, 360, 482, 783
MboI	GATC	5 cut(s)	29, 121, 358, 480, 781
MboII	GAAGA	1 cut(s)	633
MflI	RGATCY	3 cut(s)	29, 358, 781
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	8 cut(s)	412, 671, 853, 919, 958, 964, 1021, 1045
MlyI	GAGTC	5 cut(s)	160, 800, 906, 1054, 1110
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	7 cut(s)	26, 95, 724, 930, 1149, 1227, 1269
MseI	TTAA	4 cut(s)	144, 605, 1044, 1233
MslI	CAYNNNNRTG	2 cut(s)	368, 906
MspA1I	CMGCKG	1 cut(s)	827
MspI	CCGG	3 cut(s)	384, 786, 1322
MspR9I	CCNGG	7 cut(s)	234, 384, 552, 558, 646, 786, 787
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	4 cut(s)	234, 552, 558, 646
MwoI	GCNNNNNNNGC	3 cut(s)	113, 913, 1159
NciI	CCSGG	3 cut(s)	384, 786, 787
NdeI	CATATG	1 cut(s)	882
NdeII	GATC	5 cut(s)	29, 121, 358, 480, 781
NlaIII	CATG	8 cut(s)	258, 286, 570, 640, 759, 911, 1129, 1255
NlaIV	GGNNCC	3 cut(s)	31, 360, 502
NmeAIII	GCCGAG	1 cut(s)	599
NmuCI	GTSAC	1 cut(s)	946
NsbI	TGCGCA	1 cut(s)	1152
NspI	RCATGY	2 cut(s)	759, 911
OliI	CACNNNNGTG	1 cut(s)	368
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	2 cut(s)	147, 557
PkrI	GCNGC	4 cut(s)	50, 419, 496, 794
PleI	GAGTC	5 cut(s)	160, 800, 905, 1054, 1109
PpsI	GAGTC	5 cut(s)	160, 800, 905, 1054, 1109
PsiI	TTATAA	3 cut(s)	396, 1113, 1328
Psp6I	CCWGG	4 cut(s)	232, 550, 556, 644
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	4 cut(s)	232, 550, 556, 644
PspN4I	GGNNCC	3 cut(s)	31, 360, 502
PspPI	GGNCC	3 cut(s)	554, 865, 1136
PstI	CTGCAG	1 cut(s)	499
PstNI	CAGNNNCTG	3 cut(s)	26, 557, 839
PsuI	RGATCY	3 cut(s)	29, 358, 781
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	5 cut(s)	339, 778, 815, 874, 932
RsaNI	GTAC	5 cut(s)	338, 777, 814, 873, 931
RseI	CAYNNNNRTG	2 cut(s)	368, 906
SaqAI	TTAA	4 cut(s)	144, 605, 1044, 1233
SatI	GCNGC	4 cut(s)	49, 418, 495, 793
Sau3AI	GATC	5 cut(s)	29, 121, 358, 480, 781
Sau96I	GGNCC	3 cut(s)	554, 865, 1136
ScaI	AGTACT	1 cut(s)	932
SchI	GAGTC	5 cut(s)	160, 800, 906, 1054, 1110
ScrFI	CCNGG	7 cut(s)	234, 384, 552, 558, 646, 786, 787
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	4 cut(s)	103, 1168, 1255, 1349
SfcI	CTRYAG	3 cut(s)	99, 495, 828
SinI	GGWCC	2 cut(s)	865, 1136
SmaI	CCCGGG	1 cut(s)	787
SmiMI	CAYNNNNRTG	2 cut(s)	368, 906
Sse9I	AATT	8 cut(s)	412, 671, 853, 919, 958, 964, 1021, 1045
SspI	AATATT	1 cut(s)	994
SspMI	CTAG	2 cut(s)	677, 1296
StyD4I	CCNGG	7 cut(s)	232, 382, 550, 556, 644, 784, 785
TaaI	ACNGT	8 cut(s)	317, 367, 517, 743, 776, 952, 1238, 1247
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	1017, 1219
TasI	AATT	8 cut(s)	412, 671, 853, 919, 958, 964, 1021, 1045
TatI	WGTACW	2 cut(s)	776, 930
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	4 cut(s)	144, 605, 1044, 1233
Tru9I	TTAA	4 cut(s)	144, 605, 1044, 1233
TscAI	CASTG	6 cut(s)	17, 31, 490, 585, 875, 897
TseFI	GTSAC	1 cut(s)	946
TseI	GCWGC	4 cut(s)	48, 417, 494, 792
Tsp45I	GTSAC	1 cut(s)	946
TspDTI	ATGAA	3 cut(s)	462, 555, 989
TspGWI	ACGGA	3 cut(s)	801, 849, 1263
TspMI	CCCGGG	1 cut(s)	785
TspRI	CASTG	6 cut(s)	17, 31, 490, 585, 875, 897
Van91I	CCANNNNNTGG	2 cut(s)	147, 557
VpaK11BI	GGWCC	2 cut(s)	865, 1136
XapI	RAATTY	1 cut(s)	958
XceI	RCATGY	2 cut(s)	759, 911
XmaI	CCCGGG	1 cut(s)	785
XspI	CTAG	2 cut(s)	677, 1296
ZrmI	AGTACT	1 cut(s)	932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.