Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005358.1

Orthogroup ID

OG0003942

Physical Location & Seq

Genomic Coordinates Reverse (-)

32670 .. 34376

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005358.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1707 bp

atgtcaagaagaccacacaattcctcccctccggtaaaaaaacgaaggaagatggagttggacagaataagcaacttaccaagtaatgttacacaacaaattttgtcatatttgccgatcaagggtgcagggaagacaagtattttatcaaaagactggaggttcaaatgggctatgcttccttctcttgtttttgatcatgaaatagatgacccggacagtgtggatcacgttctcttacttcaccctggtcccgtaaactctttcaagctttctgcacaaaacattatggacaaaagtgctattaaccgatggattcgtcatctatcaagacaacccatcaaacagttcatactgaaagggtattataattttataagtaataggcgaccttacgacgtatcttcctctttgttttcttgtcaagatttgactcatttagagttgagcgattgttcgctaagactcccgtggactttcaatggcttcaggatgttgaggacccttaatattaagagagttactgtggcccgagatgaattggaaaagatgattgtttgtagtcctttgcttgagagattaactctacgtgacttacagggtatcacccgtctcaagattcacgcaccgaatctccaattccttaaagttcgaggagattttgaagatgttgaacttacgaataccttgaatcttgttcatgtttcacttgaccgaaatagggctcatgggagaggggacagactgctcaactcgtgtgttaagttgccttatatcaaaaggctcacaattgagggttgcattttagagtgtgctactggttccttgccgaaggagctgcgtagaccatgtctatatctgaactttctttctataaacatacgcttgaataacttggaggagatttcaactgctatgtgccttctcagaggctcacctgctctgcaggaactagaaatttcagttcgccaacaatatgaggaggctactaccgctagagaagcaactccttggttaaatgacaaccagaattgggaattcagcaaactgcaacgtgtgaaagtaaccggcttttctggtgcccaagctgaagtagacttcatcaaatttctgtttttaagctcccctgctctccaagaactagaagtttcagtttaccaaaaagacgagactgttgtaggagaagtggagtattcttggttaaataacgagcaaaattttgcacacacccaactgcgacttttgaaagtaaccgacttttgtggtgaagtagaattcatcaagtttctgcttttaagctcccctgctcttcaagaactacatattttgtttagagagaataatcataagaacaagataagaaacaagtggttagacgatgctgctatgggagatgtggacaaccggaattgcacattcacccaacttcgagttatgaacattattggcttttctggtgccaaagctgaagtaggtttcatcagatttttgcttacaagttcacctatgcttgagaggataactcttcaacctgcttctgccaaagttccttgggaagtaagtaagctgttgaacgagttcaagtccaactcggtacatacaaatttgaagttgttggacccattaaatccttctgctgactaccactcccgagccgctagatgtagaagaaccccactttgttctgactactcctattatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

568

Amino Acids

65.45

Weight (kDa)

9.06

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25150 FvH4_5g01320 FvH4_5g01330 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560
rosa_chinensis	RchiOBHm_Chr5g0049261 RchiOBHm_Chr7g0188631 RchiOBHm_Chr7g0199601
rosa_laevigata	RLG00000003784 RLG00000004676 RLG00000034607
rosa_multiflora	Rmu_co8228169.1_g000001 Rmu_sc0005358.1_g000008 Rmu_sc0009191.1_g000012 Rmu_sc0018006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032400 Rroxscaffold_3G00256570 Rroxscaffold_3G00256590 Rroxscaffold_3G00266180
rosa_rugosa	Rorug05G0246700 Rorug06G0491900 Rorug07G0055400
rosa_samantha	Rh5BG334700 Rh5DG346800 Rh7CG099700 Rh7CG189900 Rh7CG190000 Rh7DG098800
rosa_wichuraiana	Rw7G008360 Rw7G015840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	369, 377
AarI	CACCTGC	1 cut(s)	946
Acc36I	ACCTGC	2 cut(s)	946, 1540
AccB1I	GGYRCC	2 cut(s)	1079, 1457
AccI	GTMKAC	2 cut(s)	844, 1095
AciI	CCGC	2 cut(s)	993, 1656
AclWI	GGATC	1 cut(s)	234
AcsI	RAATTY	7 cut(s)	99, 957, 1037, 1106, 1216, 1274, 1603
AcuI	CTGAAG	3 cut(s)	472, 1110, 1488
AfaI	GTAC	1 cut(s)	1596
AfiI	CCNNNNNNNGG	3 cut(s)	122, 721, 1033
AflIII	ACRYGT	1 cut(s)	1054
AjnI	CCWGG	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	7 cut(s)	271, 838, 1088, 1122, 1299, 1466, 1567
AluI	AGCT	7 cut(s)	271, 838, 1088, 1122, 1299, 1466, 1567
Alw26I	GTCTC	2 cut(s)	617, 1163
AlwI	GGATC	1 cut(s)	234
Ama87I	CYCGRG	2 cut(s)	531, 1650
AoxI	GGCC	1 cut(s)	528
ApeKI	GCWGC	2 cut(s)	838, 1382
ApoI	RAATTY	7 cut(s)	99, 957, 1037, 1106, 1216, 1274, 1603
Asp700I	GAANNNNTTC	1 cut(s)	1577
AspS9I	GGNCC	4 cut(s)	251, 501, 529, 1618
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	6 cut(s)	236, 598, 927, 1277, 1411, 1494
AvaI	CYCGRG	2 cut(s)	531, 1650
AvaII	GGWCC	3 cut(s)	251, 501, 1618
BaeGI	GKGCMC	1 cut(s)	1084
BanI	GGYRCC	2 cut(s)	1079, 1457
BanII	GRGCYC	1 cut(s)	727
BauI	CACGAG	1 cut(s)	754
BbsI	GAAGAC	2 cut(s)	16, 140
BbvI	GCAGC	2 cut(s)	825, 1369
BccI	CCATC	3 cut(s)	46, 306, 347
BcgI	CGANNNNNNTGC	2 cut(s)	820, 854
BciT130I	CCWGG	1 cut(s)	249
BclI	TGATCA	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	617, 1163
BfaI	CTAG	4 cut(s)	953, 996, 1142, 1659
BfmI	CTRYAG	1 cut(s)	944
BfuAI	ACCTGC	2 cut(s)	946, 1540
BisI	GCNGC	3 cut(s)	839, 1383, 1656
BlsI	GCNGC	3 cut(s)	840, 1384, 1657
Bme1390I	CCNGG	2 cut(s)	215, 249
Bme18I	GGWCC	3 cut(s)	251, 501, 1618
BmeT110I	CYCGRG	2 cut(s)	531, 1650
BmgT120I	GGNCC	4 cut(s)	251, 501, 529, 1618
BmiI	GGNNCC	6 cut(s)	253, 503, 823, 1081, 1459, 1620
BmrFI	CCNGG	2 cut(s)	215, 249
BmsI	GCATC	1 cut(s)	1369
BpiI	GAAGAC	2 cut(s)	16, 140
BplI	GAGNNNNNCTC	4 cut(s)	568, 600, 1507, 1539
BpmI	CTGGAG	1 cut(s)	178
BpuEI	CTTGAG	3 cut(s)	593, 599, 1532
BpuMI	CCSGG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	590
BsaJI	CCNNGG	4 cut(s)	247, 470, 1010, 1550
BsaWI	WCCGGW	2 cut(s)	31, 1404
BsaXI	ACNNNNNCTCC	6 cut(s)	8, 38, 618, 648, 1631, 1661
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 721, 1033
Bse118I	RCCGGY	1 cut(s)	1067
Bse1I	ACTGG	2 cut(s)	161, 823
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	4 cut(s)	247, 470, 1010, 1550
BseGI	GGATG	1 cut(s)	498
BseLI	CCNNNNNNNGG	3 cut(s)	122, 721, 1033
BseMII	CTCAG	1 cut(s)	940
BseNI	ACTGG	2 cut(s)	161, 823
BseRI	GAGGAG	3 cut(s)	669, 914, 995
BseSI	GKGCMC	1 cut(s)	1084
BseXI	GCAGC	2 cut(s)	825, 1369
BsgI	GTGCAG	2 cut(s)	147, 261
BshFI	GGCC	1 cut(s)	530
BshNI	GGYRCC	2 cut(s)	1079, 1457
BsiHKCI	CYCGRG	2 cut(s)	531, 1650
BsiSI	CCGG	4 cut(s)	32, 215, 1068, 1405
BslFI	GGGAC	2 cut(s)	237, 752
BslI	CCNNNNNNNGG	3 cut(s)	122, 721, 1033
BsmAI	GTCTC	2 cut(s)	617, 1163
BsmBI	CGTCTC	1 cut(s)	617
BsmFI	GGGAC	2 cut(s)	237, 752
BsnI	GGCC	1 cut(s)	530
BsoBI	CYCGRG	2 cut(s)	531, 1650
Bsp1286I	GDGCHC	2 cut(s)	727, 1084
Bsp143I	GATC	3 cut(s)	117, 196, 226
BspACI	CCGC	2 cut(s)	993, 1656
BspANI	GGCC	1 cut(s)	530
BspCNI	CTCAG	1 cut(s)	939
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	6 cut(s)	253, 503, 823, 1081, 1459, 1620
BspMAI	CTGCAG	1 cut(s)	948
BspMI	ACCTGC	2 cut(s)	946, 1540
BspPI	GGATC	1 cut(s)	234
BspQI	GCTCTTC	1 cut(s)	1314
BspT107I	GGYRCC	2 cut(s)	1079, 1457
BsrFI	RCCGGY	1 cut(s)	1067
BsrI	ACTGG	2 cut(s)	161, 823
BssAI	RCCGGY	1 cut(s)	1067
BssECI	CCNNGG	4 cut(s)	247, 470, 1010, 1550
BssMI	GATC	3 cut(s)	117, 196, 226
BssSI	CACGAG	1 cut(s)	754
BssT1I	CCWWGG	2 cut(s)	1010, 1550
Bst2BI	CACGAG	1 cut(s)	754
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	4 cut(s)	221, 348, 526, 1174
Bst6I	CTCTTC	2 cut(s)	1314, 1530
BstBAI	YACGTR	1 cut(s)	590
BstDEI	CTNAG	2 cut(s)	461, 926
BstDSI	CCRYGG	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	498
BstKTI	GATC	3 cut(s)	120, 199, 229
BstMAI	GTCTC	2 cut(s)	617, 1163
BstMBI	GATC	3 cut(s)	117, 196, 226
BstMWI	GCNNNNNNNGC	3 cut(s)	835, 992, 1001
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	213, 247
BstSFI	CTRYAG	1 cut(s)	944
BstSLI	GKGCMC	1 cut(s)	1084
BstV1I	GCAGC	2 cut(s)	825, 1369
BstV2I	GAAGAC	2 cut(s)	16, 140
BsuRI	GGCC	1 cut(s)	530
BtgI	CCRYGG	1 cut(s)	470
BtsCI	GGATG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	226
BveI	ACCTGC	2 cut(s)	946, 1540
CciI	TCATGA	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	1067
Cfr13I	GGNCC	4 cut(s)	251, 501, 529, 1618
Csp6I	GTAC	1 cut(s)	1595
CviAII	CATG	4 cut(s)	200, 701, 728, 849
CviQI	GTAC	1 cut(s)	1595
DdeI	CTNAG	2 cut(s)	461, 926
DpnI	GATC	3 cut(s)	119, 198, 228
DpnII	GATC	3 cut(s)	117, 196, 226
Eam1104I	CTCTTC	2 cut(s)	1314, 1530
EarI	CTCTTC	2 cut(s)	1314, 1530
Eco130I	CCWWGG	2 cut(s)	1010, 1550
Eco24I	GRGCYC	1 cut(s)	727
Eco47I	GGWCC	3 cut(s)	251, 501, 1618
Eco57I	CTGAAG	3 cut(s)	472, 1110, 1488
Eco88I	CYCGRG	2 cut(s)	531, 1650
EcoO109I	RGGNCCY	1 cut(s)	501
EcoRI	GAATTC	2 cut(s)	1037, 1274
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	1010, 1550
EcoT38I	GRGCYC	1 cut(s)	727
ErhI	CCWWGG	2 cut(s)	1010, 1550
Esp3I	CGTCTC	1 cut(s)	617
FaeI	CATG	4 cut(s)	203, 704, 731, 852
FaqI	GGGAC	2 cut(s)	237, 752
FatI	CATG	4 cut(s)	199, 700, 727, 848
FbaI	TGATCA	1 cut(s)	196
FblI	GTMKAC	2 cut(s)	844, 1095
Fnu4HI	GCNGC	3 cut(s)	839, 1383, 1656
FokI	GGATG	1 cut(s)	505
FriOI	GRGCYC	1 cut(s)	727
Fsp4HI	GCNGC	3 cut(s)	839, 1383, 1656
FspBI	CTAG	4 cut(s)	953, 996, 1142, 1659
GluI	GCNGC	3 cut(s)	839, 1383, 1656
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	4 cut(s)	32, 215, 1068, 1405
Hin1II	CATG	4 cut(s)	203, 704, 731, 852
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	6 cut(s)	316, 433, 465, 619, 631, 691
HpaII	CCGG	4 cut(s)	32, 215, 1068, 1405
HphI	GGTGA	6 cut(s)	236, 598, 927, 1277, 1411, 1494
Hpy166II	GTNNAC	7 cut(s)	259, 474, 845, 1096, 1156, 1399, 1502
Hpy188I	TCNGA	4 cut(s)	861, 929, 1484, 1687
Hpy188III	TCNNGA	8 cut(s)	6, 200, 330, 425, 490, 616, 1313, 1650
Hpy8I	GTNNAC	7 cut(s)	259, 474, 845, 1096, 1156, 1399, 1502
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	5 cut(s)	39, 192, 826, 932, 1641
HpyCH4III	ACNGT	4 cut(s)	221, 348, 526, 1174
HpyCH4IV	ACGT	4 cut(s)	231, 399, 589, 1054
HpyCH4V	TGCA	7 cut(s)	128, 278, 801, 946, 1051, 1223, 1413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	835, 992, 1001
HpyF3I	CTNAG	2 cut(s)	461, 926
HpySE526I	ACGT	4 cut(s)	231, 399, 589, 1054
Hsp92II	CATG	4 cut(s)	203, 704, 731, 852
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	3 cut(s)	117, 196, 226
LguI	GCTCTTC	1 cut(s)	1314
LmnI	GCTCC	3 cut(s)	835, 1127, 1304
Lsp1109I	GCAGC	2 cut(s)	825, 1369
LweI	GCATC	1 cut(s)	1369
MaeI	CTAG	4 cut(s)	953, 996, 1142, 1659
MaeII	ACGT	4 cut(s)	231, 399, 589, 1054
MaeIII	GTNAC	5 cut(s)	88, 520, 590, 1063, 1249
MalI	GATC	3 cut(s)	119, 198, 228
MboI	GATC	3 cut(s)	117, 196, 226
MboII	GAAGA	8 cut(s)	21, 61, 145, 396, 677, 1301, 1517, 1680
MfeI	CAATTG	1 cut(s)	789
MhlI	GDGCHC	2 cut(s)	727, 1084
MlyI	GAGTC	2 cut(s)	427, 459
MmeI	TCCRAC	3 cut(s)	39, 1596, 1611
MroXI	GAANNNNTTC	1 cut(s)	1577
MspI	CCGG	4 cut(s)	32, 215, 1068, 1405
MspR9I	CCNGG	2 cut(s)	215, 249
MunI	CAATTG	1 cut(s)	789
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	3 cut(s)	835, 992, 1001
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	3 cut(s)	117, 196, 226
NlaIII	CATG	4 cut(s)	203, 704, 731, 852
NlaIV	GGNNCC	6 cut(s)	253, 503, 823, 1081, 1459, 1620
NmuCI	GTSAC	1 cut(s)	590
PagI	TCATGA	1 cut(s)	199
PaqCI	CACCTGC	1 cut(s)	946
PciSI	GCTCTTC	1 cut(s)	1314
PdmI	GAANNNNTTC	1 cut(s)	1577
PfeI	GAWTC	4 cut(s)	316, 619, 631, 691
PflFI	GACNNNGTC	1 cut(s)	849
PkrI	GCNGC	3 cut(s)	840, 1384, 1657
PleI	GAGTC	2 cut(s)	427, 459
PpsI	GAGTC	2 cut(s)	427, 459
Ppu21I	YACGTR	1 cut(s)	590
PpuMI	RGGWCCY	1 cut(s)	501
PsiI	TTATAA	2 cut(s)	369, 377
Psp5II	RGGWCCY	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	6 cut(s)	253, 503, 823, 1081, 1459, 1620
PspPI	GGNCC	4 cut(s)	251, 501, 529, 1618
PspPPI	RGGWCCY	1 cut(s)	501
PstI	CTGCAG	1 cut(s)	948
PsyI	GACNNNGTC	1 cut(s)	849
RsaI	GTAC	1 cut(s)	1596
RsaNI	GTAC	1 cut(s)	1595
SapI	GCTCTTC	1 cut(s)	1314
SatI	GCNGC	3 cut(s)	839, 1383, 1656
Sau3AI	GATC	3 cut(s)	117, 196, 226
Sau96I	GGNCC	4 cut(s)	251, 501, 529, 1618
SchI	GAGTC	2 cut(s)	427, 459
ScrFI	CCNGG	2 cut(s)	215, 249
SduI	GDGCHC	2 cut(s)	727, 1084
SfaNI	GCATC	1 cut(s)	1369
SfcI	CTRYAG	1 cut(s)	944
SinI	GGWCC	3 cut(s)	251, 501, 1618
SmlI	CTYRAG	3 cut(s)	572, 614, 1511
SmoI	CTYRAG	3 cut(s)	572, 614, 1511
SsiI	CCGC	2 cut(s)	993, 1656
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	4 cut(s)	953, 996, 1142, 1659
StyD4I	CCNGG	2 cut(s)	213, 247
StyI	CCWWGG	2 cut(s)	1010, 1550
TaaI	ACNGT	4 cut(s)	221, 348, 526, 1174
TaiI	ACGT	4 cut(s)	234, 402, 592, 1057
TaqI	TCGA	2 cut(s)	652, 1429
TaqII	GACCGA	1 cut(s)	729
TauI	GCSGC	1 cut(s)	1658
TfiI	GAWTC	4 cut(s)	316, 619, 631, 691
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	2 cut(s)	838, 1382
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	8 cut(s)	216, 340, 552, 689, 1090, 1267, 1451, 1468
TspRI	CASTG	1 cut(s)	226
Tth111I	GACNNNGTC	1 cut(s)	849
VpaK11BI	GGWCC	3 cut(s)	251, 501, 1618
XapI	RAATTY	7 cut(s)	99, 957, 1037, 1106, 1216, 1274, 1603
XmiI	GTMKAC	2 cut(s)	844, 1095
XmnI	GAANNNNTTC	1 cut(s)	1577
XspI	CTAG	4 cut(s)	953, 996, 1142, 1659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.