Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003942

Physical Location & Seq

Genomic Coordinates Forward (+)

8063699 .. 8067041

Gene Structure 3343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16844

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1653 bp

ATGACGATGGAGTTGGACAGAATAAGCAACTTACCTGGTGGTGTTATACAAAAGATTTTGTCATATTTGCCGATCAGGGAGGCGGTGAGGACATGTGTTTTGTCGAGCAACTGGAGGTGCAAATGGGCTATGCTTCCCCGTCTCGTGTTTGATGATCATCAAATCGGAACAACCAGCAAGGCGAGGAGGAGGAAAACTTCATTTGTGGGCATTGTTGATCGTGTTCTGTTACTTCAAATCGGCCCTGTAGATGCTTTTGAGCTTGTTTATCGGAAATATATAGCCGCTAGTGACGTTGACAGATGGATTCTTCATTTGACAAGAAAATCTTTGAAAGAGTTCACACTCACAAAATCCAGGGGGTCTCAGTACAAGATATCGTCACGTTTGTTTTCTTGCCAAGAGTTGATTCATTTGGATTTAAACAATTGTTCGCTTTGCCCCCCTTCGAGATTCAAAGGCTTCCGGAGATTGAAGAGCCTTCGGCTTCAAAACATTACTGTTGTCCAAGATGTGTTTGAAAAATTGATTGGTTCCTGCCCCCTGCTTGAGAGGCTGACTCTAATTGACCTGAATGGTATTACCCATCTCAAGATTGATGCACCTAATCTCCAATTCCTTGAAGTCCAAGATACCTTTGAGGATGTTAAGGTGGAGAATACCTTAAATCTGGTTGATGTTTTAATTGATTTTGGTGAAGCTTCTAGCTACTGTAGCAATTTGCTCAAGTATTTTGTTCAGCTACCACTTATGGAAAGGCTTACAATCAAGGGTTTCCTTTCAAAGTGTGCTATTGGTTCCTCGGCAGAGGAGCTGCCTAAACCATGTCGATGTCTGAAGTTCCTTTCTATAGGCATACGCTTGAATAATTTGGAGGAGATATTAGCTGCTATATGCTTTCTGAGAAGCTCACCTGCTCTACAAGAACTCAAAATTTCAGTTCACCAAGAAGGTGAGGCTACAGCTGGAGAAGCAACCTATTGGTTAAATGAAAACCATAATTGGGCATTCACCCAACTGCGACTTATGAAAGTGACTGCCTTCTCTGGTGTTAAAGCTGAAGTAGACTTCATCAAATTTCTTCTTTTGAGCTCTCCTGCTCTTGAAGAGCTAGAAATTGTGGCACCTTTTGAAGATCAGGCTGTTTCAGGAGAAGTGAATTCTTGGTTAGATGACAACCTGAACTGGGCATTCACCCAACTGCGACTTGTGAAAGTAACGTGCTTCTCTGGTGTGAAAGCTGAGGTAGACTTCATTAAGTTTCTGCTTTTGAGCTCTCCTGCTCTTCAAGAACTACAAATCTCGGCTCGCCATCATGTTGTTCTGGGAGAGGTGAACCCTTGGTCAGATGACAACCAGAATTGTGTATTTACCCACCTACGAGTTGTGCAATTAACAGGCATTCATGGAGTCAAACCTGAAGTAGATTTCATCAGATTTCTGCTTTCAAGTTCACCTGTGCTTGAGAGGATGACTATTCAGCCTACTTCTGTAGATTGTTCTTTGGAGCTGTTAAAGAAATTGGTCCAGTTTAGGCGAGCGTCAGTGGATGCAGAGATAAGCTACTTGGATCCATTAAGTTCAGAATCTGATGAGGATTCTGACTTTGATGATGATTATACTGATCTTGAGTCTGATTCAGATTCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

550

Amino Acids

62.35

Weight (kDa)

5.42

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	91 - 373	5.7e-20	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	99 - 312	1.3e-17	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	455 - 493	2.5e-07	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25150 FvH4_5g01320 FvH4_5g01330 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560
rosa_chinensis	RchiOBHm_Chr5g0049261 RchiOBHm_Chr7g0188631 RchiOBHm_Chr7g0199601
rosa_laevigata	RLG00000003784 RLG00000004676 RLG00000034607
rosa_multiflora	Rmu_co8228169.1_g000001 Rmu_sc0005358.1_g000008 Rmu_sc0009191.1_g000012 Rmu_sc0018006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032400 Rroxscaffold_3G00256570 Rroxscaffold_3G00256590 Rroxscaffold_3G00266180
rosa_rugosa	Rorug05G0246700 Rorug06G0491900 Rorug07G0055400
rosa_samantha	Rh5BG334700 Rh5DG346800 Rh7CG099700 Rh7CG189900 Rh7CG190000 Rh7DG098800
rosa_wichuraiana	Rw7G008360 Rw7G015840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	922
Acc36I	ACCTGC	1 cut(s)	922
AccB1I	GGYRCC	1 cut(s)	1123
AccI	GTMKAC	2 cut(s)	1065, 1248
AccIII	TCCGGA	1 cut(s)	465
AciI	CCGC	2 cut(s)	83, 285
AclWI	GGATC	2 cut(s)	1565, 1578
AcsI	RAATTY	3 cut(s)	933, 1076, 1159
AcuI	CTGAAG	3 cut(s)	857, 1080, 1440
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	1003, 1186
AflIII	ACRYGT	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	34, 356
AjuI	GAANNNNNNNTTGG	4 cut(s)	393, 425, 513, 545
Alw21I	GWGCWC	2 cut(s)	1094, 1277
Alw26I	GTCTC	2 cut(s)	146, 369
AlwI	GGATC	2 cut(s)	1565, 1578
AlwNI	CAGNNNCTG	2 cut(s)	1589, 1646
Aor13HI	TCCGGA	1 cut(s)	465
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	814, 887
ApoI	RAATTY	3 cut(s)	933, 1076, 1159
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
Asp700I	GAANNNNTTC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	242, 1525
AsuHPI	GGTGA	9 cut(s)	97, 707, 903, 935, 965, 1003, 1186, 1345, 1446
AvaII	GGWCC	1 cut(s)	1525
BamHI	GGATCC	1 cut(s)	1570
BanI	GGYRCC	1 cut(s)	1123
BanII	GRGCYC	2 cut(s)	1094, 1277
BauI	CACGAG	1 cut(s)	143
Bbv12I	GWGCWC	2 cut(s)	1094, 1277
BbvCI	CCTCAGC	1 cut(s)	1242
BbvI	GCAGC	2 cut(s)	801, 874
BccI	CCATC	3 cut(s)	297, 594, 1320
BciT130I	CCWGG	2 cut(s)	36, 358
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	146, 369
BfaI	CTAG	3 cut(s)	288, 705, 1112
BfmI	CTRYAG	5 cut(s)	246, 712, 849, 960, 1491
BfuAI	ACCTGC	1 cut(s)	922
BisI	GCNGC	3 cut(s)	285, 815, 888
BlsI	GCNGC	3 cut(s)	286, 816, 889
Bme1390I	CCNGG	2 cut(s)	36, 358
Bme18I	GGWCC	1 cut(s)	1525
BmgT120I	GGNCC	2 cut(s)	242, 1525
BmiI	GGNNCC	4 cut(s)	535, 799, 1125, 1572
BmrFI	CCNGG	2 cut(s)	36, 358
BmrI	ACTGGG	1 cut(s)	1195
BmsI	GCATC	3 cut(s)	241, 589, 1540
BmuI	ACTGGG	1 cut(s)	1195
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
BpmI	CTGGAG	2 cut(s)	133, 987
Bpu10I	CCTNAGC	1 cut(s)	1242
BpuEI	CTTGAG	5 cut(s)	569, 575, 710, 1484, 1649
BsaBI	GATNNNNATC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	357, 801, 1340
BsaWI	WCCGGW	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	1003, 1186
Bse1I	ACTGG	3 cut(s)	116, 1190, 1528
Bse8I	GATNNNNATC	1 cut(s)	156
BseAI	TCCGGA	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	36, 358
BseDI	CCNNGG	3 cut(s)	357, 801, 1340
BseGI	GGATG	3 cut(s)	649, 1476, 1555
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	1003, 1186
BseMII	CTCAG	3 cut(s)	380, 893, 1233
BseNI	ACTGG	3 cut(s)	116, 1190, 1528
BseRI	GAGGAG	4 cut(s)	199, 202, 824, 890
BseXI	GCAGC	2 cut(s)	801, 874
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	1123
BsiHKAI	GWGCWC	2 cut(s)	1094, 1277
BsiSI	CCGG	1 cut(s)	466
BslI	CCNNNNNNNGG	2 cut(s)	1003, 1186
BsmAI	GTCTC	2 cut(s)	146, 369
BsmBI	CGTCTC	1 cut(s)	146
BsmI	GAATGC	3 cut(s)	1007, 1190, 1401
BsnI	GGCC	1 cut(s)	243
Bso31I	GGTCTC	1 cut(s)	369
Bsp1286I	GDGCHC	2 cut(s)	1094, 1277
Bsp13I	TCCGGA	1 cut(s)	465
Bsp143I	GATC	6 cut(s)	72, 154, 217, 1135, 1570, 1624
BspACI	CCGC	2 cut(s)	83, 285
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	3 cut(s)	379, 894, 1234
BspEI	TCCGGA	1 cut(s)	465
BspLI	GGNNCC	4 cut(s)	535, 799, 1125, 1572
BspMI	ACCTGC	1 cut(s)	922
BspPI	GGATC	2 cut(s)	1565, 1578
BspQI	GCTCTTC	3 cut(s)	470, 1101, 1290
BspT107I	GGYRCC	1 cut(s)	1123
BspTNI	GGTCTC	1 cut(s)	369
BsrI	ACTGG	3 cut(s)	116, 1190, 1528
BssECI	CCNNGG	3 cut(s)	357, 801, 1340
BssMI	GATC	6 cut(s)	72, 154, 217, 1135, 1570, 1624
BssSI	CACGAG	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	1340
Bst2BI	CACGAG	1 cut(s)	143
Bst2UI	CCWGG	2 cut(s)	36, 358
Bst4CI	ACNGT	2 cut(s)	502, 713
Bst6I	CTCTTC	3 cut(s)	470, 1101, 1290
BstC8I	GCNNGC	2 cut(s)	1309, 1539
BstDEI	CTNAG	3 cut(s)	366, 902, 1242
BstF5I	GGATG	3 cut(s)	649, 1476, 1555
BstKTI	GATC	6 cut(s)	75, 157, 220, 1138, 1573, 1627
BstMAI	GTCTC	2 cut(s)	146, 369
BstMBI	GATC	6 cut(s)	72, 154, 217, 1135, 1570, 1624
BstMWI	GCNNNNNNNGC	3 cut(s)	553, 714, 971
BstNI	CCWGG	2 cut(s)	36, 358
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	34, 356
BstSFI	CTRYAG	5 cut(s)	246, 712, 849, 960, 1491
BstV1I	GCAGC	2 cut(s)	801, 874
BstX2I	RGATCY	1 cut(s)	1570
BstYI	RGATCY	1 cut(s)	1570
BsuRI	GGCC	1 cut(s)	243
BtsCI	GGATG	3 cut(s)	649, 1476, 1555
BtsIMutI	CAGTG	1 cut(s)	1551
BveI	ACCTGC	1 cut(s)	922
Cac8I	GCNNGC	2 cut(s)	1309, 1539
CaiI	CAGNNNCTG	2 cut(s)	1589, 1646
Cfr13I	GGNCC	2 cut(s)	242, 1525
CseI	GACGC	1 cut(s)	1530
CsiI	ACCWGGT	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	4 cut(s)	93, 825, 1316, 1406
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	3 cut(s)	366, 902, 1242
DpnI	GATC	6 cut(s)	74, 156, 219, 1137, 1572, 1626
DpnII	GATC	6 cut(s)	72, 154, 217, 1135, 1570, 1624
DraI	TTTAAA	1 cut(s)	423
Eam1104I	CTCTTC	3 cut(s)	470, 1101, 1290
EarI	CTCTTC	3 cut(s)	470, 1101, 1290
Ecl136II	GAGCTC	2 cut(s)	1092, 1275
Eco130I	CCWWGG	1 cut(s)	1340
Eco24I	GRGCYC	2 cut(s)	1094, 1277
Eco31I	GGTCTC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	1525
Eco53kI	GAGCTC	2 cut(s)	1092, 1275
Eco57I	CTGAAG	3 cut(s)	857, 1080, 1440
EcoICRI	GAGCTC	2 cut(s)	1092, 1275
EcoRI	GAATTC	1 cut(s)	1159
EcoRII	CCWGG	2 cut(s)	34, 356
EcoRV	GATATC	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	1340
EcoT38I	GRGCYC	2 cut(s)	1094, 1277
ErhI	CCWWGG	1 cut(s)	1340
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	4 cut(s)	96, 828, 1319, 1409
FalI	AAGNNNNNCTT	2 cut(s)	313, 345
FatI	CATG	4 cut(s)	92, 824, 1315, 1405
FbaI	TGATCA	1 cut(s)	154
FblI	GTMKAC	2 cut(s)	1065, 1248
Fnu4HI	GCNGC	3 cut(s)	285, 815, 888
FokI	GGATG	3 cut(s)	656, 1483, 1562
FriOI	GRGCYC	2 cut(s)	1094, 1277
Fsp4HI	GCNGC	3 cut(s)	285, 815, 888
FspBI	CTAG	3 cut(s)	288, 705, 1112
GluI	GCNGC	3 cut(s)	285, 815, 888
GsuI	CTGGAG	2 cut(s)	133, 987
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	1 cut(s)	466
HgaI	GACGC	1 cut(s)	1530
Hin1II	CATG	4 cut(s)	96, 828, 1319, 1409
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	699
HpaII	CCGG	1 cut(s)	466
HphI	GGTGA	9 cut(s)	97, 707, 903, 935, 965, 1003, 1186, 1345, 1446
Hpy166II	GTNNAC	7 cut(s)	298, 342, 943, 1066, 1249, 1336, 1454
Hpy188III	TCNNGA	7 cut(s)	450, 466, 592, 1103, 1149, 1289, 1628
Hpy8I	GTNNAC	7 cut(s)	298, 342, 943, 1066, 1249, 1336, 1454
HpyAV	CCTTC	4 cut(s)	456, 491, 944, 1051
HpyCH4III	ACNGT	2 cut(s)	502, 713
HpyCH4IV	ACGT	3 cut(s)	294, 385, 1220
HpyCH4V	TGCA	4 cut(s)	120, 602, 1390, 1553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	553, 714, 971
HpyF3I	CTNAG	3 cut(s)	366, 902, 1242
HpySE526I	ACGT	3 cut(s)	294, 385, 1220
Hsp92II	CATG	4 cut(s)	96, 828, 1319, 1409
Kpn2I	TCCGGA	1 cut(s)	465
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	6 cut(s)	72, 154, 217, 1135, 1570, 1624
LguI	GCTCTTC	3 cut(s)	470, 1101, 1290
LmnI	GCTCC	2 cut(s)	811, 1507
Lsp1109I	GCAGC	2 cut(s)	801, 874
LweI	GCATC	3 cut(s)	241, 589, 1540
MabI	ACCWGGT	1 cut(s)	34
MaeI	CTAG	3 cut(s)	288, 705, 1112
MaeII	ACGT	3 cut(s)	294, 385, 1220
MaeIII	GTNAC	5 cut(s)	228, 290, 381, 1033, 1216
MalI	GATC	6 cut(s)	74, 156, 219, 1137, 1572, 1626
MboI	GATC	6 cut(s)	72, 154, 217, 1135, 1570, 1624
MboII	GAAGA	6 cut(s)	302, 487, 1073, 1118, 1145, 1277
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	1 cut(s)	1570
MhlI	GDGCHC	2 cut(s)	1094, 1277
MlyI	GAGTC	3 cut(s)	553, 1419, 1640
MroI	TCCGGA	1 cut(s)	465
MroXI	GAANNNNTTC	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	829
MspA1I	CMGCKG	1 cut(s)	965
MspI	CCGG	1 cut(s)	466
MspR9I	CCNGG	2 cut(s)	36, 358
MunI	CAATTG	1 cut(s)	427
Mva1269I	GAATGC	3 cut(s)	1007, 1190, 1401
MvaI	CCWGG	2 cut(s)	36, 358
MwoI	GCNNNNNNNGC	3 cut(s)	553, 714, 971
NdeII	GATC	6 cut(s)	72, 154, 217, 1135, 1570, 1624
NlaIII	CATG	4 cut(s)	96, 828, 1319, 1409
NlaIV	GGNNCC	4 cut(s)	535, 799, 1125, 1572
NmeAIII	GCCGAG	2 cut(s)	782, 1283
NmuCI	GTSAC	3 cut(s)	290, 381, 1033
NspI	RCATGY	1 cut(s)	96
PaqCI	CACCTGC	1 cut(s)	922
PciI	ACATGT	1 cut(s)	92
PciSI	GCTCTTC	3 cut(s)	470, 1101, 1290
PctI	GAATGC	3 cut(s)	1007, 1190, 1401
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	7 cut(s)	307, 409, 453, 1586, 1598, 1637, 1643
PkrI	GCNGC	3 cut(s)	286, 816, 889
PleI	GAGTC	3 cut(s)	553, 1418, 1639
PpsI	GAGTC	3 cut(s)	553, 1418, 1639
PscI	ACATGT	1 cut(s)	92
Psp124BI	GAGCTC	2 cut(s)	1094, 1277
Psp6I	CCWGG	2 cut(s)	34, 356
PspGI	CCWGG	2 cut(s)	34, 356
PspN4I	GGNNCC	4 cut(s)	535, 799, 1125, 1572
PspPI	GGNCC	2 cut(s)	242, 1525
PstNI	CAGNNNCTG	2 cut(s)	1589, 1646
PsuI	RGATCY	1 cut(s)	1570
PvuII	CAGCTG	1 cut(s)	965
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	829
SacI	GAGCTC	2 cut(s)	1094, 1277
SapI	GCTCTTC	3 cut(s)	470, 1101, 1290
SatI	GCNGC	3 cut(s)	285, 815, 888
Sau3AI	GATC	6 cut(s)	72, 154, 217, 1135, 1570, 1624
Sau96I	GGNCC	2 cut(s)	242, 1525
SchI	GAGTC	3 cut(s)	553, 1419, 1640
ScrFI	CCNGG	2 cut(s)	36, 358
SduI	GDGCHC	2 cut(s)	1094, 1277
SexAI	ACCWGGT	1 cut(s)	34
SfaNI	GCATC	3 cut(s)	241, 589, 1540
SfcI	CTRYAG	5 cut(s)	246, 712, 849, 960, 1491
SinI	GGWCC	1 cut(s)	1525
SmiMI	CAYNNNNRTG	1 cut(s)	829
SmlI	CTYRAG	5 cut(s)	548, 590, 725, 1463, 1628
SmoI	CTYRAG	5 cut(s)	548, 590, 725, 1463, 1628
SsiI	CCGC	2 cut(s)	83, 285
SspMI	CTAG	3 cut(s)	288, 705, 1112
SstI	GAGCTC	2 cut(s)	1094, 1277
StyD4I	CCNGG	2 cut(s)	34, 356
StyI	CCWWGG	1 cut(s)	1340
TaaI	ACNGT	2 cut(s)	502, 713
TaiI	ACGT	3 cut(s)	297, 388, 1223
TaqI	TCGA	3 cut(s)	104, 449, 829
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	7 cut(s)	307, 409, 453, 1586, 1598, 1637, 1643
TscAI	CASTG	1 cut(s)	1551
TseFI	GTSAC	3 cut(s)	290, 381, 1033
TseI	GCWGC	2 cut(s)	814, 887
Tsp45I	GTSAC	3 cut(s)	290, 381, 1033
TspDTI	ATGAA	9 cut(s)	189, 302, 401, 1005, 1043, 1060, 1243, 1394, 1420
TspRI	CASTG	1 cut(s)	1551
VpaK11BI	GGWCC	1 cut(s)	1525
XapI	RAATTY	3 cut(s)	933, 1076, 1159
XceI	RCATGY	1 cut(s)	96
XmiI	GTMKAC	2 cut(s)	1065, 1248
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	3 cut(s)	288, 705, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.