FvH4_5g09560

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
5537480 .. 5540986
3507 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09560.t1

Sequence Viewer

Length: 1659 bp
ATGAGGATGGAGTTGGACAGAATAAGCAACTTACCAGGTGGTGTTATACAGAAGATTCTGTCGTATTTGCCGATCAGGGAGGCGGTGAGGACAAGTGTTTTGTCCAGCAACTGGAGGTGCAAATGGGCTATGCTTCCGCGTCTCGTGTTTGATGATCAACAAATCGGTGCAACCAGCAAGTCAAGGAGGAGGAAGACTACGTTTGTGAGCATTGTTGATCGTGTTCTGTTGCTTCAGATCGGCCCCATTGATGCTTTTGAGCTTGTTTATCGGAAGTTTATTGCTGCTAGTGATGTCGACAGATGGATTCTTCATCTGACGAGGAAATCTCTGAAAGAGTTCACGCTTGCAAAATTCCGGGGGTCTCGATATAATGTATCGTCGTGTTTGTTTTCTTGCCAAGAGTTGGTTCATTTGGATTTACACAATTGTTCAGTCAAGCCCCCTTCGGCGTTCAAAGGCTTCAGGAGATTGAAGAGTCTTCGTCTTGAGAATGTTGCCGTTGCCCAAGATGCGTTTGAAAAATTGATTGGTTACTGCCCCCTGCTTGAGAGACTGACTCTGATTGACTTAAATGGTATCACCCATCTCAAGATCGATGCACCTAATCTCAAATTCCTTGAAGTCCATGATACTTTTGAGGATGTTAAGGTTGACAATACCTTAAATCTGGTTGATGTTTCAATTGATTTTGGTGAAGCTTCTAGCCACTCTAGCAATTTGCTCAAGTATTTTGTTCAGCTACCACTTATGGAAAGGCTCACAATCAAGGGTTTCCTTTCAAAGTGTGCTATTGGTGCCTCGGCAGAGGAGCTGCCTAAACCATATCAATGTCTTAAGTTCCTTTCTATAGGTATACGCTTGAATAATTTGGAGGAGATATTAGCTGCTTTATGCTTTCTGAGAAGCTCACCTGCTCTACAAGAACTCAAAATTTCAGTTCACCAAGAAGGTGAGGCTACAGCTGGAGAAGCGACCAATTGGCTAAATGAAAACCATAATTGGGCATTCACCCAACTCCGACTTATGAAAGTGACTGCCTTCTCTGGTGTTAAAGCTGAAGTAGACTTCATCAAAATTCTTCTTTTGTGCTCTCCTGCTCTTGAAGAACTAGAAATTGTGGCACCTTTTGAAGATCAGGCTGTCTCAGGAGAAGTGAATTCTTGGTTAGATGCCAACCTGAACTGGGCATTCACCCAACTGCGACTTGTGAAAGTGACTTCCTTCTCTGGTGTGAAAGCTGAAGTAGACTTCATTAAGTTTCTGCTTTTAAGCTCTCCTGCTCTTCAAGAACTACAGATTTCGGCTCGCGATCAGGTAGTTCTCGGAGAAGCGAACCCTTGGTCAGATGACAACCAAAATTTTGTATTCACCCACCTACGAGTTGTGCAGTTAACAGGCATTCATGGAGTCAAACCTGAAGTAGATTTCATCAGATTTCTGCTTTCAAGTTCACCTGTGCTTGAGAGGATGACTATTCAGCCTACTTCTGCGGATTGTTCTTTGGAATTGTTGAAGAAATTGGTCCAGTTTAGGCGTGTGTCAGTGGATGCAGAGATAAGCTACTTGGATCCACTAAGTTCAGATTCTGATGAGAATTCTGACTTTGATTCTGATGATTATACTGATGATCTTGAGTCTGATTCAGATTCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

553

Amino Acids

62.28

Weight (kDa)

5.35

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 8 - 47 5.4e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 91 - 373 9e-21 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 99 - 312 1.2e-17 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 458 - 493 3.4e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 922
Acc36I ACCTGC 1 cut(s) 922
AccB1I GGYRCC 2 cut(s) 797, 1123
AccB7I CCANNNNNTGG 2 cut(s) 111, 406
AccI GTMKAC 4 cut(s) 297, 856, 1065, 1248
AccII CGCG 2 cut(s) 139, 1311
AciI CCGC 3 cut(s) 83, 137, 1493
AclWI GGATC 2 cut(s) 1565, 1578
AcsI RAATTY 7 cut(s) 353, 614, 933, 1077, 1159, 1360, 1597
AcuI CTGAAG 5 cut(s) 218, 448, 1080, 1263, 1440
AfiI CCNNNNNNNGG 4 cut(s) 111, 406, 1003, 1186
AflII CTTAAG 1 cut(s) 836
AjnI CCWGG 1 cut(s) 34
AjuI GAANNNNNNNTTGG 4 cut(s) 393, 425, 513, 545
Alw21I GWGCWC 1 cut(s) 1094
Alw26I GTCTC 4 cut(s) 146, 369, 547, 1150
AlwI GGATC 2 cut(s) 1565, 1578
AlwNI CAGNNNCTG 3 cut(s) 111, 1589, 1652
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 3 cut(s) 284, 814, 887
ApoI RAATTY 7 cut(s) 353, 614, 933, 1077, 1159, 1360, 1597
ArsI GACNNNNNNTTYG 4 cut(s) 82, 114, 1328, 1360
Asp700I GAANNNNTTC 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 242, 1525
AsuC2I CCSGG 1 cut(s) 359
AvaII GGWCC 1 cut(s) 1525
BamHI GGATCC 1 cut(s) 1570
BanI GGYRCC 2 cut(s) 797, 1123
BauI CACGAG 1 cut(s) 143
BbsI GAAGAC 2 cut(s) 200, 473
Bbv12I GWGCWC 1 cut(s) 1094
BbvI GCAGC 3 cut(s) 271, 801, 874
BccI CCATC 2 cut(s) 297, 594
BceAI ACGGC 1 cut(s) 485
BciT130I CCWGG 1 cut(s) 36
BclI TGATCA 1 cut(s) 154
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 4 cut(s) 146, 369, 547, 1150
BfaI CTAG 4 cut(s) 288, 705, 714, 1112
BfmI CTRYAG 3 cut(s) 849, 960, 1295
BfrI CTTAAG 1 cut(s) 836
BfuAI ACCTGC 1 cut(s) 922
BisI GCNGC 3 cut(s) 285, 815, 888
BlsI GCNGC 3 cut(s) 286, 816, 889
Bme1390I CCNGG 2 cut(s) 36, 359
Bme18I GGWCC 1 cut(s) 1525
BmgT120I GGNCC 2 cut(s) 242, 1525
BmiI GGNNCC 4 cut(s) 244, 799, 1125, 1572
BmrFI CCNGG 2 cut(s) 36, 359
BmrI ACTGGG 1 cut(s) 1195
BmsI GCATC 5 cut(s) 241, 502, 589, 1162, 1540
BmuI ACTGGG 1 cut(s) 1195
BpiI GAAGAC 2 cut(s) 200, 473
BplI GAGNNNNNCTC 4 cut(s) 313, 345, 544, 576
BpmI CTGGAG 2 cut(s) 133, 987
BpuEI CTTGAG 6 cut(s) 509, 569, 575, 710, 1484, 1655
BpuMI CCSGG 1 cut(s) 359
Bsa29I ATCGAT 1 cut(s) 597
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 3 cut(s) 358, 801, 1340
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 406, 1003, 1186
Bse1I ACTGG 3 cut(s) 116, 1190, 1528
BseBI CCWGG 1 cut(s) 36
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 3 cut(s) 358, 801, 1340
BseGI GGATG 4 cut(s) 12, 649, 1476, 1555
BseLI CCNNNNNNNGG 4 cut(s) 111, 406, 1003, 1186
BseMII CTCAG 2 cut(s) 893, 1161
BseNI ACTGG 3 cut(s) 116, 1190, 1528
BseRI GAGGAG 3 cut(s) 202, 824, 890
BseXI GCAGC 3 cut(s) 271, 801, 874
BsgI GTGCAG 1 cut(s) 1409
Bsh1236I CGCG 2 cut(s) 139, 1311
BshFI GGCC 1 cut(s) 243
BshNI GGYRCC 2 cut(s) 797, 1123
BshVI ATCGAT 1 cut(s) 597
BsiHKAI GWGCWC 1 cut(s) 1094
BsiSI CCGG 1 cut(s) 358
BslI CCNNNNNNNGG 4 cut(s) 111, 406, 1003, 1186
BsmAI GTCTC 4 cut(s) 146, 369, 547, 1150
BsmBI CGTCTC 1 cut(s) 146
BsmI GAATGC 3 cut(s) 1007, 1190, 1401
BsnI GGCC 1 cut(s) 243
Bso31I GGTCTC 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 1094
Bsp143I GATC 9 cut(s) 72, 154, 217, 237, 594, 1135, 1312, 1570, 1630
Bsp68I TCGCGA 1 cut(s) 1311
BspACI CCGC 3 cut(s) 83, 137, 1493
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 2 cut(s) 894, 1160
BspDI ATCGAT 1 cut(s) 597
BspFNI CGCG 2 cut(s) 139, 1311
BspLI GGNNCC 4 cut(s) 244, 799, 1125, 1572
BspMI ACCTGC 1 cut(s) 922
BspPI GGATC 2 cut(s) 1565, 1578
BspQI GCTCTTC 1 cut(s) 1290
BspT107I GGYRCC 2 cut(s) 797, 1123
BspTI CTTAAG 1 cut(s) 836
BspTNI GGTCTC 1 cut(s) 369
BsrI ACTGG 3 cut(s) 116, 1190, 1528
BssECI CCNNGG 3 cut(s) 358, 801, 1340
BssMI GATC 9 cut(s) 72, 154, 217, 237, 594, 1135, 1312, 1570, 1630
BssNAI GTATAC 1 cut(s) 857
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 1340
Bst1107I GTATAC 1 cut(s) 857
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 36
Bst6I CTCTTC 2 cut(s) 470, 1290
BstAFI CTTAAG 1 cut(s) 836
BstC8I GCNNGC 2 cut(s) 348, 1309
BstDEI CTNAG 3 cut(s) 902, 1147, 1577
BstF5I GGATG 4 cut(s) 12, 649, 1476, 1555
BstFNI CGCG 2 cut(s) 139, 1311
BstKTI GATC 9 cut(s) 75, 157, 220, 240, 597, 1138, 1315, 1573, 1633
BstMAI GTCTC 4 cut(s) 146, 369, 547, 1150
BstMBI GATC 9 cut(s) 72, 154, 217, 237, 594, 1135, 1312, 1570, 1630
BstMWI GCNNNNNNNGC 4 cut(s) 512, 714, 797, 971
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 2 cut(s) 34, 357
BstSFI CTRYAG 3 cut(s) 849, 960, 1295
BstUI CGCG 2 cut(s) 139, 1311
BstV1I GCAGC 3 cut(s) 271, 801, 874
BstV2I GAAGAC 2 cut(s) 200, 473
BstX2I RGATCY 1 cut(s) 1570
BstYI RGATCY 1 cut(s) 1570
BstZ17I GTATAC 1 cut(s) 857
Bsu15I ATCGAT 1 cut(s) 597
BsuRI GGCC 1 cut(s) 243
BsuTUI ATCGAT 1 cut(s) 597
BtsCI GGATG 4 cut(s) 12, 649, 1476, 1555
BtsIMutI CAGTG 1 cut(s) 1551
BtuMI TCGCGA 1 cut(s) 1311
BveI ACCTGC 1 cut(s) 922
Cac8I GCNNGC 2 cut(s) 348, 1309
CaiI CAGNNNCTG 3 cut(s) 111, 1589, 1652
Cfr13I GGNCC 2 cut(s) 242, 1525
ClaI ATCGAT 1 cut(s) 597
CseI GACGC 1 cut(s) 128
CsiI ACCWGGT 1 cut(s) 34
CviAII CATG 2 cut(s) 629, 1406
DdeI CTNAG 3 cut(s) 902, 1147, 1577
DpnI GATC 9 cut(s) 74, 156, 219, 239, 596, 1137, 1314, 1572, 1632
DpnII GATC 9 cut(s) 72, 154, 217, 237, 594, 1135, 1312, 1570, 1630
Eam1104I CTCTTC 2 cut(s) 470, 1290
EarI CTCTTC 2 cut(s) 470, 1290
Eco130I CCWWGG 1 cut(s) 1340
Eco31I GGTCTC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 1525
Eco57I CTGAAG 5 cut(s) 218, 448, 1080, 1263, 1440
EcoRI GAATTC 2 cut(s) 1159, 1597
EcoRII CCWGG 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 1340
ErhI CCWWGG 1 cut(s) 1340
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 2 cut(s) 632, 1409
FatI CATG 2 cut(s) 628, 1405
FbaI TGATCA 1 cut(s) 154
FblI GTMKAC 4 cut(s) 297, 856, 1065, 1248
Fnu4HI GCNGC 3 cut(s) 285, 815, 888
FokI GGATG 4 cut(s) 19, 656, 1483, 1562
Fsp4HI GCNGC 3 cut(s) 285, 815, 888
FspBI CTAG 4 cut(s) 288, 705, 714, 1112
GluI GCNGC 3 cut(s) 285, 815, 888
GsuI CTGGAG 2 cut(s) 133, 987
HaeIII GGCC 1 cut(s) 243
HapII CCGG 1 cut(s) 358
HgaI GACGC 1 cut(s) 128
Hin1II CATG 2 cut(s) 632, 1409
HincII GTYRAC 3 cut(s) 298, 655, 1395
HindII GTYRAC 3 cut(s) 298, 655, 1395
HindIII AAGCTT 1 cut(s) 699
HpaI GTTAAC 1 cut(s) 1395
HpaII CCGG 1 cut(s) 358
Hpy166II GTNNAC 9 cut(s) 298, 342, 655, 857, 943, 1066, 1249, 1395, 1454
Hpy188III TCNNGA 9 cut(s) 366, 466, 488, 592, 1103, 1149, 1289, 1310, 1634
Hpy8I GTNNAC 9 cut(s) 298, 342, 655, 857, 943, 1066, 1249, 1395, 1454
Hpy99I CGWCG 1 cut(s) 385
HpyAV CCTTC 4 cut(s) 456, 944, 1051, 1234
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 6 cut(s) 120, 170, 350, 602, 1390, 1553
HpyF10VI GCNNNNNNNGC 4 cut(s) 512, 714, 797, 971
HpyF3I CTNAG 3 cut(s) 902, 1147, 1577
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 2 cut(s) 632, 1409
Ksp22I TGATCA 1 cut(s) 154
KspAI GTTAAC 1 cut(s) 1395
Kzo9I GATC 9 cut(s) 72, 154, 217, 237, 594, 1135, 1312, 1570, 1630
LguI GCTCTTC 1 cut(s) 1290
LmnI GCTCC 1 cut(s) 811
Lsp1109I GCAGC 3 cut(s) 271, 801, 874
LweI GCATC 5 cut(s) 241, 502, 589, 1162, 1540
MabI ACCWGGT 1 cut(s) 34
MaeI CTAG 4 cut(s) 288, 705, 714, 1112
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 3 cut(s) 533, 1033, 1216
MalI GATC 9 cut(s) 74, 156, 219, 239, 596, 1137, 1314, 1572, 1632
MboI GATC 9 cut(s) 72, 154, 217, 237, 594, 1135, 1312, 1570, 1630
MfeI CAATTG 3 cut(s) 427, 684, 979
MflI RGATCY 1 cut(s) 1570
MhlI GDGCHC 1 cut(s) 1094
MlyI GAGTC 4 cut(s) 487, 553, 1419, 1646
MmeI TCCRAC 1 cut(s) 1045
MroXI GAANNNNTTC 1 cut(s) 338
MseI TTAA 8 cut(s) 572, 648, 665, 837, 1053, 1257, 1271, 1394
MslI CAYNNNNRTG 1 cut(s) 829
MspA1I CMGCKG 1 cut(s) 965
MspCI CTTAAG 1 cut(s) 836
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 2 cut(s) 36, 359
MunI CAATTG 3 cut(s) 427, 684, 979
Mva1269I GAATGC 3 cut(s) 1007, 1190, 1401
MvaI CCWGG 1 cut(s) 36
MvnI CGCG 2 cut(s) 139, 1311
MwoI GCNNNNNNNGC 4 cut(s) 512, 714, 797, 971
NciI CCSGG 1 cut(s) 359
NdeII GATC 9 cut(s) 72, 154, 217, 237, 594, 1135, 1312, 1570, 1630
NlaIII CATG 2 cut(s) 632, 1409
NlaIV GGNNCC 4 cut(s) 244, 799, 1125, 1572
NmeAIII GCCGAG 1 cut(s) 782
NmuCI GTSAC 2 cut(s) 1033, 1216
NruI TCGCGA 1 cut(s) 1311
PaqCI CACCTGC 1 cut(s) 922
PciSI GCTCTTC 1 cut(s) 1290
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PctI GAATGC 3 cut(s) 1007, 1190, 1401
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 6 cut(s) 55, 307, 1586, 1610, 1643, 1649
PflMI CCANNNNNTGG 2 cut(s) 111, 406
PkrI GCNGC 3 cut(s) 286, 816, 889
PleI GAGTC 4 cut(s) 486, 553, 1418, 1645
PpsI GAGTC 4 cut(s) 486, 553, 1418, 1645
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 4 cut(s) 244, 799, 1125, 1572
PspPI GGNCC 2 cut(s) 242, 1525
PstNI CAGNNNCTG 3 cut(s) 111, 1589, 1652
PsuI RGATCY 1 cut(s) 1570
PvuII CAGCTG 1 cut(s) 965
RruI TCGCGA 1 cut(s) 1311
RseI CAYNNNNRTG 1 cut(s) 829
SalI GTCGAC 1 cut(s) 296
SapI GCTCTTC 1 cut(s) 1290
SaqAI TTAA 8 cut(s) 572, 648, 665, 837, 1053, 1257, 1271, 1394
SatI GCNGC 3 cut(s) 285, 815, 888
Sau3AI GATC 9 cut(s) 72, 154, 217, 237, 594, 1135, 1312, 1570, 1630
Sau96I GGNCC 2 cut(s) 242, 1525
SchI GAGTC 4 cut(s) 487, 553, 1419, 1646
ScrFI CCNGG 2 cut(s) 36, 359
SduI GDGCHC 1 cut(s) 1094
SexAI ACCWGGT 1 cut(s) 34
SfaNI GCATC 5 cut(s) 241, 502, 589, 1162, 1540
SfcI CTRYAG 3 cut(s) 849, 960, 1295
SinI GGWCC 1 cut(s) 1525
SmiMI CAYNNNNRTG 1 cut(s) 829
SmlI CTYRAG 7 cut(s) 488, 548, 590, 725, 836, 1463, 1634
SmoI CTYRAG 7 cut(s) 488, 548, 590, 725, 836, 1463, 1634
SsiI CCGC 3 cut(s) 83, 137, 1493
SspMI CTAG 4 cut(s) 288, 705, 714, 1112
StyD4I CCNGG 2 cut(s) 34, 357
StyI CCWWGG 1 cut(s) 1340
TaiI ACGT 1 cut(s) 203
TaqI TCGA 3 cut(s) 297, 367, 597
TfiI GAWTC 6 cut(s) 55, 307, 1586, 1610, 1643, 1649
Tru1I TTAA 8 cut(s) 572, 648, 665, 837, 1053, 1257, 1271, 1394
Tru9I TTAA 8 cut(s) 572, 648, 665, 837, 1053, 1257, 1271, 1394
TscAI CASTG 1 cut(s) 1551
TseFI GTSAC 2 cut(s) 1033, 1216
TseI GCWGC 3 cut(s) 284, 814, 887
Tsp45I GTSAC 2 cut(s) 1033, 1216
TspDTI ATGAA 8 cut(s) 302, 401, 1005, 1043, 1060, 1243, 1394, 1420
TspRI CASTG 1 cut(s) 1551
Van91I CCANNNNNTGG 2 cut(s) 111, 406
Vha464I CTTAAG 1 cut(s) 836
VpaK11BI GGWCC 1 cut(s) 1525
XapI RAATTY 7 cut(s) 353, 614, 933, 1077, 1159, 1360, 1597
XmiI GTMKAC 4 cut(s) 297, 856, 1065, 1248
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 4 cut(s) 288, 705, 714, 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.