Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009191.1

Orthogroup ID

OG0003942

Physical Location & Seq

Genomic Coordinates Forward (+)

33404 .. 35340

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009191.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1587 bp

atgcagacagagccgccaccaatctttttaaagaagaaacagaggatgaagctggacagaataagcaacttagaagacgatgttatacaacaaatcttgtcatgtttgccgatcagggacgcagtgaggacaagaattttatcgcgtacctggaagtccaactgtgataatcttccatgtcttgtatttgatgatcggtgttgtctctcggatcaaaccggcacgaaggggaagagggaaactacgcttgagaacattgttgattatgttctggtatcccaaattggctccatacacaccttcaagatttcttgtcgaaataagcctctagctgctgcggatatcgatagatggatttatcgtctatcaaaatcctctttgaagaagtgtacactggagctgtggaggggtcctccttacaatgtctcttcgagtttgtttttgtgtcaggatttgattcatttagagttacatagttgtctgcttaaacccccgtcgaccttcaaaggcttctggaaattgaagaccttaaatattcaaatggttaccattacgcaagacatgttcgaaaagatgattgcttgctcccctctgcttgagaaactgattttatgtgactttgctggtatcaaaactctcaacatcgatgcaccaaaactccaataccttaaggtcgaaggtgcttttgaggatgttgacattggggtgaataccttaaaccttgttcatgtgtcaattgaacaaaaaaaggcagcttctatcagttgtaccaatttcttcaagttcttttctcaactgactcgtatcgaaagtctctcaattgatggttttttcctacagtcttctgttggtgccttgcaagaggagctgctgaaaccatatctatgtctcaagtctctttgcttaggcatacgcttgaataatttagatgagactttagctgctgtacaccttctgagaagctctccggtaaaagaactagaaatttcggttcgccaagaagccgaggctgctgatgctaatgtaggagacacaactttttggttaaatgataaccagaagttcagccaactgcgacttgtgaaagtaaccgacttctctggtgtcaaagctgaagtggacttcattaaatttctgcttttacgttccccttctcttcaacaattagaaattctggcttggcagcaagatggggctattaggagaaaagtgagctcttggttaggcgacagccagaattgggctttcaaccaactacgagttgtgaaattaattgacatttctggtgtcaaagctgaattagcactcatcagatttctgcttctcaaatcacctgtccttgagaagatgattgttcggcctcttcaccttactggcaatcgtgctttaataaagaagctgctccagtttaggcgtgcgtcggggaaagcagagataaagtacttggatccattaaagcatgtgcctgctaatgctggttcaaatcaaaggcaagctaatgctcatgccgattatgagtctgactctagctcgtcgtctgactctagctcgtcgtctgactctagctcttcatccgactcggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

528

Amino Acids

59.46

Weight (kDa)

8.78

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003942)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25150 FvH4_5g01320 FvH4_5g01330 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560 FvH4_5g09560
rosa_chinensis	RchiOBHm_Chr5g0049261 RchiOBHm_Chr7g0188631 RchiOBHm_Chr7g0199601
rosa_laevigata	RLG00000003784 RLG00000004676 RLG00000034607
rosa_multiflora	Rmu_co8228169.1_g000001 Rmu_sc0005358.1_g000008 Rmu_sc0009191.1_g000012 Rmu_sc0018006.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032400 Rroxscaffold_3G00256570 Rroxscaffold_3G00256590 Rroxscaffold_3G00266180
rosa_rugosa	Rorug05G0246700 Rorug06G0491900 Rorug07G0055400
rosa_samantha	Rh5BG334700 Rh5DG346800 Rh7CG099700 Rh7CG189900 Rh7CG190000 Rh7DG098800
rosa_wichuraiana	Rw7G008360 Rw7G015840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	851
AccI	GTMKAC	1 cut(s)	497
AccII	CGCG	1 cut(s)	145
AciI	CCGC	2 cut(s)	14, 338
AclWI	GGATC	3 cut(s)	219, 1442, 1455
AcsI	RAATTY	4 cut(s)	135, 984, 1130, 1170
AcuI	CTGAAG	1 cut(s)	1134
AfaI	GTAC	5 cut(s)	148, 391, 769, 948, 1442
AfiI	CCNNNNNNNGG	1 cut(s)	1240
AflII	CTTAAG	1 cut(s)	668
AflIII	ACRYGT	1 cut(s)	561
AjnI	CCWGG	1 cut(s)	149
Alw21I	GWGCWC	1 cut(s)	1217
Alw26I	GTCTC	7 cut(s)	209, 430, 818, 893, 900, 926, 1023
AlwI	GGATC	3 cut(s)	219, 1442, 1455
AoxI	GGCC	1 cut(s)	1358
ApeKI	GCWGC	8 cut(s)	332, 335, 752, 868, 941, 1010, 1183, 1399
ApoI	RAATTY	4 cut(s)	135, 984, 1130, 1170
ArsI	GACNNNNNNTTYG	2 cut(s)	1320, 1352
AseI	ATTAAT	1 cut(s)	1271
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	3 cut(s)	718, 1323, 1358
AsuII	TTCGAA	1 cut(s)	567
AvaII	GGWCC	1 cut(s)	410
BamHI	GGATCC	1 cut(s)	1447
BanI	GGYRCC	1 cut(s)	851
BanII	GRGCYC	1 cut(s)	1217
BbsI	GAAGAC	3 cut(s)	81, 530, 834
Bbv12I	GWGCWC	1 cut(s)	1217
BbvI	GCAGC	8 cut(s)	319, 322, 764, 855, 928, 997, 1195, 1386
BccI	CCATC	3 cut(s)	345, 818, 1184
BciT130I	CCWGG	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	286
BcoDI	GTCTC	7 cut(s)	209, 430, 818, 893, 900, 926, 1023
BfaI	CTAG	5 cut(s)	329, 980, 1527, 1545, 1563
BfmI	CTRYAG	1 cut(s)	836
BfrI	CTTAAG	1 cut(s)	668
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	9 cut(s)	14, 333, 336, 753, 869, 942, 1011, 1184, 1400
BlsI	GCNGC	9 cut(s)	15, 334, 337, 754, 870, 943, 1012, 1185, 1401
BmcAI	AGTACT	1 cut(s)	1442
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	4 cut(s)	289, 411, 853, 1449
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	637, 1006
BpiI	GAAGAC	3 cut(s)	81, 530, 834
BplI	GAGNNNNNCTC	6 cut(s)	397, 429, 949, 981, 1508, 1540
BpmI	CTGGAG	2 cut(s)	416, 1388
Bpu10I	CCTNAGC	1 cut(s)	904
Bpu14I	TTCGAA	1 cut(s)	567
BpuEI	CTTGAG	4 cut(s)	269, 617, 875, 1361
Bsa29I	ATCGAT	2 cut(s)	345, 645
BsaJI	CCNNGG	1 cut(s)	1005
BsaWI	WCCGGW	1 cut(s)	967
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	1240
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	3 cut(s)	399, 1378, 1405
BseBI	CCWGG	1 cut(s)	151
BseCI	ATCGAT	2 cut(s)	345, 645
BseDI	CCNNGG	1 cut(s)	1005
BseGI	GGATG	3 cut(s)	51, 697, 1571
BseLI	CCNNNNNNNGG	1 cut(s)	1240
BseMII	CTCAG	1 cut(s)	947
BseNI	ACTGG	3 cut(s)	399, 1378, 1405
BseRI	GAGGAG	1 cut(s)	878
BseXI	GCAGC	8 cut(s)	319, 322, 764, 855, 928, 997, 1195, 1386
Bsh1236I	CGCG	1 cut(s)	145
BshFI	GGCC	1 cut(s)	1360
BshNI	GGYRCC	1 cut(s)	851
BshVI	ATCGAT	2 cut(s)	345, 645
BsiHKAI	GWGCWC	1 cut(s)	1217
BsiSI	CCGG	2 cut(s)	219, 968
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	1240
BsmAI	GTCTC	7 cut(s)	209, 430, 818, 893, 900, 926, 1023
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	1360
Bsp119I	TTCGAA	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	1217
Bsp1407I	TGTACA	2 cut(s)	389, 946
Bsp143I	GATC	4 cut(s)	111, 193, 211, 1447
BspACI	CCGC	2 cut(s)	14, 338
BspANI	GGCC	1 cut(s)	1360
BspCNI	CTCAG	1 cut(s)	948
BspDI	ATCGAT	2 cut(s)	345, 645
BspFNI	CGCG	1 cut(s)	145
BspLI	GGNNCC	4 cut(s)	289, 411, 853, 1449
BspPI	GGATC	3 cut(s)	219, 1442, 1455
BspQI	GCTCTTC	1 cut(s)	1573
BspT104I	TTCGAA	1 cut(s)	567
BspT107I	GGYRCC	1 cut(s)	851
BspTI	CTTAAG	1 cut(s)	668
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	2 cut(s)	389, 946
BsrI	ACTGG	3 cut(s)	399, 1378, 1405
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	1005
BssMI	GATC	4 cut(s)	111, 193, 211, 1447
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	164, 840
Bst6I	CTCTTC	5 cut(s)	227, 433, 1161, 1368, 1573
BstAFI	CTTAAG	1 cut(s)	668
BstAUI	TGTACA	2 cut(s)	389, 946
BstBI	TTCGAA	1 cut(s)	567
BstC8I	GCNNGC	4 cut(s)	583, 1416, 1467, 1494
BstDEI	CTNAG	3 cut(s)	70, 904, 956
BstEII	GGTNACC	1 cut(s)	544
BstF5I	GGATG	3 cut(s)	51, 697, 1571
BstFNI	CGCG	1 cut(s)	145
BstKTI	GATC	4 cut(s)	114, 196, 214, 1450
BstMAI	GTCTC	7 cut(s)	209, 430, 818, 893, 900, 926, 1023
BstMBI	GATC	4 cut(s)	111, 193, 211, 1447
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 865, 1010, 1016, 1301
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	2 cut(s)	565, 1463
BstPI	GGTNACC	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	836
BstUI	CGCG	1 cut(s)	145
BstV1I	GCAGC	8 cut(s)	319, 322, 764, 855, 928, 997, 1195, 1386
BstV2I	GAAGAC	3 cut(s)	81, 530, 834
BstX2I	RGATCY	1 cut(s)	1447
BstYI	RGATCY	1 cut(s)	1447
Bsu15I	ATCGAT	2 cut(s)	345, 645
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	1360
BsuTUI	ATCGAT	2 cut(s)	345, 645
BtsCI	GGATG	3 cut(s)	51, 697, 1571
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	2 cut(s)	129, 392
Cac8I	GCNNGC	4 cut(s)	583, 1416, 1467, 1494
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	410
ClaI	ATCGAT	2 cut(s)	345, 645
CseI	GACGC	2 cut(s)	128, 1407
Csp6I	GTAC	5 cut(s)	147, 390, 768, 947, 1441
CviAII	CATG	6 cut(s)	102, 177, 562, 728, 1460, 1505
CviQI	GTAC	5 cut(s)	147, 390, 768, 947, 1441
DdeI	CTNAG	3 cut(s)	70, 904, 956
DpnI	GATC	4 cut(s)	113, 195, 213, 1449
DpnII	GATC	4 cut(s)	111, 193, 211, 1447
DraI	TTTAAA	1 cut(s)	30
Eam1104I	CTCTTC	5 cut(s)	227, 433, 1161, 1368, 1573
EarI	CTCTTC	5 cut(s)	227, 433, 1161, 1368, 1573
Ecl136II	GAGCTC	1 cut(s)	1215
Eco24I	GRGCYC	1 cut(s)	1217
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	1215
Eco57I	CTGAAG	1 cut(s)	1134
Eco91I	GGTNACC	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	1215
EcoO109I	RGGNCCY	1 cut(s)	410
EcoO65I	GGTNACC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	149
EcoRV	GATATC	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	1217
FaeI	CATG	6 cut(s)	105, 180, 565, 731, 1463, 1508
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	6 cut(s)	101, 176, 561, 727, 1459, 1504
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	9 cut(s)	14, 333, 336, 753, 869, 942, 1011, 1184, 1400
FokI	GGATG	3 cut(s)	58, 704, 1558
FriOI	GRGCYC	1 cut(s)	1217
Fsp4HI	GCNGC	9 cut(s)	14, 333, 336, 753, 869, 942, 1011, 1184, 1400
FspBI	CTAG	5 cut(s)	329, 980, 1527, 1545, 1563
GluI	GCNGC	9 cut(s)	14, 333, 336, 753, 869, 942, 1011, 1184, 1400
GsuI	CTGGAG	2 cut(s)	416, 1388
HaeIII	GGCC	1 cut(s)	1360
HapII	CCGG	2 cut(s)	219, 968
HgaI	GACGC	2 cut(s)	128, 1407
Hin1II	CATG	6 cut(s)	105, 180, 565, 731, 1463, 1508
HincII	GTYRAC	2 cut(s)	498, 697
HindII	GTYRAC	2 cut(s)	498, 697
HinfI	GANTC	7 cut(s)	457, 799, 1517, 1523, 1541, 1559, 1577
HpaII	CCGG	2 cut(s)	219, 968
HphI	GGTGA	3 cut(s)	718, 1323, 1358
Hpy166II	GTNNAC	6 cut(s)	390, 392, 498, 697, 949, 1120
Hpy188I	TCNGA	8 cut(s)	211, 957, 1313, 1522, 1540, 1558, 1576, 1582
Hpy188III	TCNNGA	3 cut(s)	304, 449, 514
Hpy8I	GTNNAC	6 cut(s)	390, 392, 498, 697, 949, 1120
Hpy99I	CGWCG	4 cut(s)	499, 1423, 1537, 1555
HpyAV	CCTTC	6 cut(s)	220, 310, 511, 671, 962, 1161
HpyCH4III	ACNGT	2 cut(s)	164, 840
HpyCH4IV	ACGT	1 cut(s)	1144
HpyCH4V	TGCA	3 cut(s)	4, 650, 859
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 865, 1010, 1016, 1301
HpyF3I	CTNAG	3 cut(s)	70, 904, 956
HpySE526I	ACGT	1 cut(s)	1144
Hsp92II	CATG	6 cut(s)	105, 180, 565, 731, 1463, 1508
Kzo9I	GATC	4 cut(s)	111, 193, 211, 1447
LguI	GCTCTTC	1 cut(s)	1573
LmnI	GCTCC	5 cut(s)	293, 397, 590, 865, 1407
Lsp1109I	GCAGC	8 cut(s)	319, 322, 764, 855, 928, 997, 1195, 1386
LweI	GCATC	2 cut(s)	637, 1006
MaeI	CTAG	5 cut(s)	329, 980, 1527, 1545, 1563
MaeII	ACGT	1 cut(s)	1144
MaeIII	GTNAC	4 cut(s)	468, 544, 614, 1087
MalI	GATC	4 cut(s)	113, 195, 213, 1449
MboI	GATC	4 cut(s)	111, 193, 211, 1447
MfeI	CAATTG	2 cut(s)	735, 819
MflI	RGATCY	1 cut(s)	1447
MhlI	GDGCHC	1 cut(s)	1217
MlyI	GAGTC	6 cut(s)	793, 1517, 1526, 1535, 1553, 1571
MmeI	TCCRAC	1 cut(s)	183
MslI	CAYNNNNRTG	2 cut(s)	704, 883
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	2 cut(s)	219, 968
MspR9I	CCNGG	1 cut(s)	151
MunI	CAATTG	2 cut(s)	735, 819
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	145
MwoI	GCNNNNNNNGC	5 cut(s)	10, 865, 1010, 1016, 1301
NdeII	GATC	4 cut(s)	111, 193, 211, 1447
NlaIII	CATG	6 cut(s)	105, 180, 565, 731, 1463, 1508
NlaIV	GGNNCC	4 cut(s)	289, 411, 853, 1449
NmeAIII	GCCGAG	1 cut(s)	1030
NmuCI	GTSAC	1 cut(s)	614
NspI	RCATGY	2 cut(s)	565, 1463
NspV	TTCGAA	1 cut(s)	567
PciI	ACATGT	1 cut(s)	561
PciSI	GCTCTTC	1 cut(s)	1573
PfeI	GAWTC	1 cut(s)	457
PkrI	GCNGC	9 cut(s)	15, 334, 337, 754, 870, 943, 1012, 1185, 1401
PleI	GAGTC	6 cut(s)	793, 1517, 1525, 1535, 1553, 1571
PpsI	GAGTC	6 cut(s)	793, 1517, 1525, 1535, 1553, 1571
PpuMI	RGGWCCY	1 cut(s)	410
PscI	ACATGT	1 cut(s)	561
PshBI	ATTAAT	1 cut(s)	1271
Psp124BI	GAGCTC	1 cut(s)	1217
Psp5II	RGGWCCY	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	149
PspEI	GGTNACC	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	4 cut(s)	289, 411, 853, 1449
PspPI	GGNCC	1 cut(s)	410
PspPPI	RGGWCCY	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	1447
RsaI	GTAC	5 cut(s)	148, 391, 769, 948, 1442
RsaNI	GTAC	5 cut(s)	147, 390, 768, 947, 1441
RseI	CAYNNNNRTG	2 cut(s)	704, 883
SacI	GAGCTC	1 cut(s)	1217
SalI	GTCGAC	1 cut(s)	496
SapI	GCTCTTC	1 cut(s)	1573
SatI	GCNGC	9 cut(s)	14, 333, 336, 753, 869, 942, 1011, 1184, 1400
Sau3AI	GATC	4 cut(s)	111, 193, 211, 1447
Sau96I	GGNCC	1 cut(s)	410
ScaI	AGTACT	1 cut(s)	1442
SchI	GAGTC	6 cut(s)	793, 1517, 1526, 1535, 1553, 1571
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	1217
SfaNI	GCATC	2 cut(s)	637, 1006
SfcI	CTRYAG	1 cut(s)	836
SfuI	TTCGAA	1 cut(s)	567
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	2 cut(s)	704, 883
SmlI	CTYRAG	5 cut(s)	248, 596, 668, 890, 1340
SmoI	CTYRAG	5 cut(s)	248, 596, 668, 890, 1340
SsiI	CCGC	2 cut(s)	14, 338
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	5 cut(s)	329, 980, 1527, 1545, 1563
SstI	GAGCTC	1 cut(s)	1217
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	164, 840
TaiI	ACGT	1 cut(s)	1147
TaqI	TCGA	8 cut(s)	316, 345, 431, 497, 567, 645, 675, 807
TatI	WGTACW	3 cut(s)	389, 946, 1440
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	457
TscAI	CASTG	2 cut(s)	129, 399
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	8 cut(s)	332, 335, 752, 868, 941, 1010, 1183, 1399
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	5 cut(s)	62, 449, 716, 1114, 1560
TspRI	CASTG	2 cut(s)	129, 399
Vha464I	CTTAAG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	410
VspI	ATTAAT	1 cut(s)	1271
XapI	RAATTY	4 cut(s)	135, 984, 1130, 1170
XceI	RCATGY	2 cut(s)	565, 1463
XmiI	GTMKAC	1 cut(s)	497
XspI	CTAG	5 cut(s)	329, 980, 1527, 1545, 1563
ZrmI	AGTACT	1 cut(s)	1442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.