Rh7CG190000

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003942
Physical Location & Seq
Reverse (-)
16745975 .. 16746490
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG190000.1

Sequence Viewer

Length: 516 bp
ATGCAGACAGAGCCGCCACCAATCTTTTTAAAGAAGAAACAGAGGATGAAGCTGGACAGAATAAGCAACTTAGAAGATGATGTTATACAACAAATCTTGTCATGTTTGCCGATCAGGGACGCAGTGAGGACAAGAATTTTATCGCGTACCTGGAAGTCCAACTGTGATAATCTTCCATGTCTTGTATTTGATGATTGGTGTTGTCTCTCGGATCAAACTGGCACGAAGAGGAAGAGGGAAACCACATTTGAGAACATTGTTGATTATGTTCTGGTATCTCAAATTGGCTCCATACACACCTTCAAGATTTCTTGTCGAAATAAGCCTCTAGCTGCTGCGGATATCGATAGATGGATTTATCGTTTATCAAAATCCTCTTTGAAGAAGTGCACACTGGAGCTGTGGAGGGGTCCTCCTTACAATGTCTCTTCGAGTTTGTTTTTGTGTCAGGATTTGATTCATTTAGAGTTACGTAATTGTCTGCTTAAACCCCCGTCGACCTTCAAAGGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

171

Amino Acids

19.88

Weight (kDa)

9.21

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 21 - 60 1.8e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 497
AccII CGCG 1 cut(s) 145
AciI CCGC 2 cut(s) 14, 338
AclWI GGATC 1 cut(s) 219
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 1 cut(s) 148
AgsI TTSAA 3 cut(s) 304, 382, 505
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 3 cut(s) 52, 332, 400
AluI AGCT 3 cut(s) 52, 332, 400
Alw21I GWGCWC 1 cut(s) 392
Alw26I GTCTC 2 cut(s) 209, 430
Alw44I GTGCAC 1 cut(s) 388
AlwI GGATC 1 cut(s) 219
ApaLI GTGCAC 1 cut(s) 388
ApeKI GCWGC 2 cut(s) 332, 335
ApoI RAATTY 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 410
AvaII GGWCC 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 392
BbvI GCAGC 2 cut(s) 319, 322
BccI CCATC 1 cut(s) 345
BciT130I CCWGG 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 209, 430
BfaI CTAG 1 cut(s) 329
BisI GCNGC 3 cut(s) 14, 333, 336
BlsI GCNGC 3 cut(s) 15, 334, 337
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 2 cut(s) 289, 411
BmrFI CCNGG 1 cut(s) 151
BplI GAGNNNNNCTC 2 cut(s) 397, 429
BpmI CTGGAG 1 cut(s) 416
Bsa29I ATCGAT 1 cut(s) 345
BsaAI YACGTR 1 cut(s) 473
Bse1I ACTGG 2 cut(s) 223, 399
BseBI CCWGG 1 cut(s) 151
BseCI ATCGAT 1 cut(s) 345
BseGI GGATG 1 cut(s) 51
BseNI ACTGG 2 cut(s) 223, 399
BseSI GKGCMC 1 cut(s) 392
BseXI GCAGC 2 cut(s) 319, 322
Bsh1236I CGCG 1 cut(s) 145
BshVI ATCGAT 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 392
BslFI GGGAC 1 cut(s) 131
BsmAI GTCTC 2 cut(s) 209, 430
BsmFI GGGAC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 392
Bsp143I GATC 2 cut(s) 111, 211
BspACI CCGC 2 cut(s) 14, 338
BspDI ATCGAT 1 cut(s) 345
BspFNI CGCG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 289, 411
BspPI GGATC 1 cut(s) 219
BsrI ACTGG 2 cut(s) 223, 399
BssMI GATC 2 cut(s) 111, 211
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 3 cut(s) 221, 227, 433
BstBAI YACGTR 1 cut(s) 473
BstDEI CTNAG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 51
BstFNI CGCG 1 cut(s) 145
BstKTI GATC 2 cut(s) 114, 214
BstMAI GTCTC 2 cut(s) 209, 430
BstMBI GATC 2 cut(s) 111, 211
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstSLI GKGCMC 1 cut(s) 392
BstSNI TACGTA 1 cut(s) 473
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 319, 322
Bsu15I ATCGAT 1 cut(s) 345
BsuTUI ATCGAT 1 cut(s) 345
BtsCI GGATG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 129, 392
Cfr13I GGNCC 1 cut(s) 410
ClaI ATCGAT 1 cut(s) 345
CseI GACGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 147
CviAII CATG 2 cut(s) 102, 177
CviJI RGCY 7 cut(s) 13, 52, 288, 325, 332, 400, 510
CviKI_1 RGCY 7 cut(s) 13, 52, 288, 325, 332, 400, 510
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 1 cut(s) 70
DpnI GATC 2 cut(s) 113, 213
DpnII GATC 2 cut(s) 111, 211
DraI TTTAAA 1 cut(s) 30
Eam1104I CTCTTC 3 cut(s) 221, 227, 433
EarI CTCTTC 3 cut(s) 221, 227, 433
Eco105I TACGTA 1 cut(s) 473
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 410
EcoO109I RGGNCCY 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 149
EcoRV GATATC 1 cut(s) 343
FaeI CATG 2 cut(s) 105, 180
FaiI YATR 5 cut(s) 86, 103, 178, 267, 293
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 101, 176
FblI GTMKAC 1 cut(s) 497
Fnu4HI GCNGC 3 cut(s) 14, 333, 336
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 3 cut(s) 14, 333, 336
FspBI CTAG 1 cut(s) 329
GluI GCNGC 3 cut(s) 14, 333, 336
GsuI CTGGAG 1 cut(s) 416
HgaI GACGC 1 cut(s) 128
Hin1II CATG 2 cut(s) 105, 180
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HinfI GANTC 1 cut(s) 457
Hpy166II GTNNAC 2 cut(s) 390, 498
Hpy188I TCNGA 2 cut(s) 211, 515
Hpy188III TCNNGA 2 cut(s) 304, 449
Hpy8I GTNNAC 2 cut(s) 390, 498
Hpy99I CGWCG 1 cut(s) 499
HpyAV CCTTC 2 cut(s) 310, 511
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 2 cut(s) 4, 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 472
Hsp92II CATG 2 cut(s) 105, 180
Kzo9I GATC 2 cut(s) 111, 211
LmnI GCTCC 2 cut(s) 293, 397
LpnPI CCDG 8 cut(s) 38, 100, 136, 163, 204, 257, 380, 434
Lsp1109I GCAGC 2 cut(s) 319, 322
MaeI CTAG 1 cut(s) 329
MaeII ACGT 1 cut(s) 472
MaeIII GTNAC 1 cut(s) 468
MalI GATC 2 cut(s) 113, 213
MboI GATC 2 cut(s) 111, 211
MboII GAAGA 7 cut(s) 46, 86, 164, 238, 244, 394, 420
MhlI GDGCHC 1 cut(s) 392
MluCI AATT 3 cut(s) 135, 282, 475
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 8 cut(s) 36, 120, 222, 228, 336, 385, 399, 423
MseI TTAA 2 cut(s) 29, 486
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 2 cut(s) 111, 211
NlaIII CATG 2 cut(s) 105, 180
NlaIV GGNNCC 2 cut(s) 289, 411
PfeI GAWTC 1 cut(s) 457
PkrI GCNGC 3 cut(s) 15, 334, 337
Ppu21I YACGTR 1 cut(s) 473
PpuMI RGGWCCY 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 2 cut(s) 289, 411
PspPI GGNCC 1 cut(s) 410
PspPPI RGGWCCY 1 cut(s) 410
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SalI GTCGAC 1 cut(s) 496
SaqAI TTAA 2 cut(s) 29, 486
SatI GCNGC 3 cut(s) 14, 333, 336
Sau3AI GATC 2 cut(s) 111, 211
Sau96I GGNCC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 392
SetI ASST 7 cut(s) 54, 152, 302, 334, 402, 475, 503
SinI GGWCC 1 cut(s) 410
SnaBI TACGTA 1 cut(s) 473
Sse9I AATT 3 cut(s) 135, 282, 475
SsiI CCGC 2 cut(s) 14, 338
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 1 cut(s) 475
TaqI TCGA 4 cut(s) 316, 345, 431, 497
TasI AATT 3 cut(s) 135, 282, 475
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 2 cut(s) 29, 486
Tru9I TTAA 2 cut(s) 29, 486
TscAI CASTG 2 cut(s) 129, 399
TseI GCWGC 2 cut(s) 332, 335
TspDTI ATGAA 2 cut(s) 62, 449
TspRI CASTG 2 cut(s) 129, 399
VneI GTGCAC 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 1 cut(s) 135
XmiI GTMKAC 1 cut(s) 497
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.