RchiOBHm_Chr7g0199601

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
17680445 .. 17682336
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17862

Sequence Viewer

Length: 1542 bp
ATGAAGCTGGACAGAATAAGCAACTTAGAAGACGATGTTATACAACAAATCTTGTCATGTTTGCCGATCAGGGACGCAGTGAGGACAAGAATTTTATCGCGTACCTGGAAGTCCAACTGTGATAATCTTCCATGTCTTGTATTTGATGATCGGTGTTGTCTCTCGGATCAAACCGGCACGAAGGGGAAGAGGGAAACCACGCTTGAGAACATTGTTGATTATGTTCTGGTATCCCAAATTGGCTCCATACACACCTTCAAGATTTCTTGTCGAAATAAGCCTCTAGCTGCTGCGGATATCGATAGATGGATTTATCGTCTATCAAAATCCTCTTTGAAGAAGTGTACACTGGAGCTGTGGAGGGGTCCTCCTTACAATGTCTCTTCGAGTTTGTTTTTGTGTCAGGATTTGATTCATTTAGAGTTACATAGTTGTCTGCTTAAACCCCCGTCGACCTTCAAAGGCTTCTGGAAATTGAAGACCTTAAATATTCAAATGGTTACCATTACGCAAGACATGTTCGAAAAGATGATTGCTTGCTCCCCTCTGCTTGAGAAACTGATTTTATGTGACTTTGCTGGTATCAAAACTCTCAACATCGATGCACCAAAACTCCAATACCTTAAGGTCGAAGGTGCTTTTGAGGATGTTGACATTGGGGTGAATACCTTAAACCTTGTTCATGTGTCAATTGAACAAAAAAAGGCAGCTTCTATCAGTTGTACCAATTTCTTCAAGTTCTTTTCTCAACTGACTCGTATCGAAAGTCTCTCAATTGATGGTTTTTTCCTACAGTCTTCTGTTGGTGCCTTGCAAGAGGAGCTGCTGAAACCATATCTATGTCTCAAGTCTCTTTGCTTAGGCATACGCTTGAATAATTTAGATGAGACTTTAGCTGCTGTACACCTTCTGAGAAGCTCTCCGGTACAAGAACTAGAAATTTCGGTTCGCCAAGAAGCCGAGGCTGCTGATGCTAATGTAGGAGACACAACTTTTTGGTTAAATGATAACCAGAAGTTCAGCCAACTGCGACTTGTGAAAGTAACCGGCTTCTCTGGTGTCAAAGCTGAAGTGGACTTCATTAAATTTCTGCTTTTACGTTCCCCTTCTCTTCAACAATTAGAAATTCTGGCTTGGCAGCAAGATGGGGCTATTAGGAGAAAAGTGAGCTCTTGGTTAGGCGACAGCCAGAATTGGGCTTTCAACCAACTACGAGTTGTGAAATTAATTGACATTTCTGGTGTCAAAGCTGAATTAGCACTCATCAGATTTCTGCTTCTCAAATCACCTGTCCTTGAGAAGATGATTGTTCGGCCTCTTCACCTTACTGGCAATCGTGCTTTAATAAAGAAGCTGCTCCAGTTTAGGCGTGCGTCGGGGAAAGCAGAGATAAAGTACTTGGATCCATTAAAGCATGTGCCTGCTAATGCTGGTTCAAATCAAAGGCAAGCTAATGCTCATGCCGATTATGAGTCTGACTCTAGCTCGTCGTCTGACTCTAGCTCGTCGTCTGACTCTAGCTCTTCATCCGACTCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

513

Amino Acids

57.58

Weight (kDa)

8.54

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 45 9.2e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 85 - 381 6.2e-17 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 101 - 308 1.2e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 806
AccI GTMKAC 1 cut(s) 452
AccII CGCG 1 cut(s) 100
AciI CCGC 1 cut(s) 293
AclWI GGATC 3 cut(s) 174, 1397, 1410
AcsI RAATTY 4 cut(s) 90, 939, 1085, 1125
AcuI CTGAAG 1 cut(s) 1089
AfaI GTAC 6 cut(s) 103, 346, 724, 903, 927, 1397
AfiI CCNNNNNNNGG 1 cut(s) 1195
AflII CTTAAG 1 cut(s) 623
AflIII ACRYGT 1 cut(s) 516
AjnI CCWGG 1 cut(s) 104
Alw21I GWGCWC 1 cut(s) 1172
Alw26I GTCTC 7 cut(s) 164, 385, 773, 848, 855, 881, 978
AlwI GGATC 3 cut(s) 174, 1397, 1410
AoxI GGCC 1 cut(s) 1313
ApeKI GCWGC 8 cut(s) 287, 290, 707, 823, 896, 965, 1138, 1354
ApoI RAATTY 4 cut(s) 90, 939, 1085, 1125
ArsI GACNNNNNNTTYG 2 cut(s) 1275, 1307
AseI ATTAAT 1 cut(s) 1226
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 3 cut(s) 673, 1278, 1313
AsuII TTCGAA 1 cut(s) 522
AvaII GGWCC 1 cut(s) 365
BamHI GGATCC 1 cut(s) 1402
BanI GGYRCC 1 cut(s) 806
BanII GRGCYC 1 cut(s) 1172
BbsI GAAGAC 3 cut(s) 36, 485, 789
Bbv12I GWGCWC 1 cut(s) 1172
BbvI GCAGC 8 cut(s) 274, 277, 719, 810, 883, 952, 1150, 1341
BccI CCATC 3 cut(s) 300, 773, 1139
BciT130I CCWGG 1 cut(s) 106
BciVI GTATCC 1 cut(s) 241
BcoDI GTCTC 7 cut(s) 164, 385, 773, 848, 855, 881, 978
BfaI CTAG 5 cut(s) 284, 935, 1482, 1500, 1518
BfmI CTRYAG 1 cut(s) 791
BfrI CTTAAG 1 cut(s) 623
BfuI GTATCC 1 cut(s) 241
BisI GCNGC 8 cut(s) 288, 291, 708, 824, 897, 966, 1139, 1355
BlsI GCNGC 8 cut(s) 289, 292, 709, 825, 898, 967, 1140, 1356
BmcAI AGTACT 1 cut(s) 1397
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 4 cut(s) 244, 366, 808, 1404
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 2 cut(s) 592, 961
BpiI GAAGAC 3 cut(s) 36, 485, 789
BplI GAGNNNNNCTC 6 cut(s) 352, 384, 904, 936, 1463, 1495
BpmI CTGGAG 2 cut(s) 371, 1343
Bpu10I CCTNAGC 1 cut(s) 859
Bpu14I TTCGAA 1 cut(s) 522
BpuEI CTTGAG 4 cut(s) 224, 572, 830, 1316
Bsa29I ATCGAT 2 cut(s) 300, 600
BsaJI CCNNGG 1 cut(s) 960
BsaWI WCCGGW 1 cut(s) 922
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 1 cut(s) 1195
Bse118I RCCGGY 2 cut(s) 173, 1046
Bse1I ACTGG 3 cut(s) 354, 1333, 1360
BseBI CCWGG 1 cut(s) 106
BseCI ATCGAT 2 cut(s) 300, 600
BseDI CCNNGG 1 cut(s) 960
BseGI GGATG 2 cut(s) 652, 1526
BseLI CCNNNNNNNGG 1 cut(s) 1195
BseMII CTCAG 1 cut(s) 902
BseNI ACTGG 3 cut(s) 354, 1333, 1360
BseRI GAGGAG 1 cut(s) 833
BseXI GCAGC 8 cut(s) 274, 277, 719, 810, 883, 952, 1150, 1341
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 1315
BshNI GGYRCC 1 cut(s) 806
BshVI ATCGAT 2 cut(s) 300, 600
BsiHKAI GWGCWC 1 cut(s) 1172
BsiSI CCGG 3 cut(s) 174, 923, 1047
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 1195
BsmAI GTCTC 7 cut(s) 164, 385, 773, 848, 855, 881, 978
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 1 cut(s) 1315
Bsp119I TTCGAA 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 1172
Bsp1407I TGTACA 2 cut(s) 344, 901
Bsp143I GATC 4 cut(s) 66, 148, 166, 1402
BspACI CCGC 1 cut(s) 293
BspANI GGCC 1 cut(s) 1315
BspCNI CTCAG 1 cut(s) 903
BspDI ATCGAT 2 cut(s) 300, 600
BspFNI CGCG 1 cut(s) 100
BspLI GGNNCC 4 cut(s) 244, 366, 808, 1404
BspPI GGATC 3 cut(s) 174, 1397, 1410
BspQI GCTCTTC 1 cut(s) 1528
BspT104I TTCGAA 1 cut(s) 522
BspT107I GGYRCC 1 cut(s) 806
BspTI CTTAAG 1 cut(s) 623
BsrFI RCCGGY 2 cut(s) 173, 1046
BsrGI TGTACA 2 cut(s) 344, 901
BsrI ACTGG 3 cut(s) 354, 1333, 1360
BssAI RCCGGY 2 cut(s) 173, 1046
BssECI CCNNGG 1 cut(s) 960
BssMI GATC 4 cut(s) 66, 148, 166, 1402
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 2 cut(s) 119, 795
Bst6I CTCTTC 5 cut(s) 182, 388, 1116, 1323, 1528
BstAFI CTTAAG 1 cut(s) 623
BstAUI TGTACA 2 cut(s) 344, 901
BstBI TTCGAA 1 cut(s) 522
BstC8I GCNNGC 4 cut(s) 538, 1371, 1422, 1449
BstDEI CTNAG 3 cut(s) 25, 859, 911
BstEII GGTNACC 1 cut(s) 499
BstF5I GGATG 2 cut(s) 652, 1526
BstFNI CGCG 1 cut(s) 100
BstKTI GATC 4 cut(s) 69, 151, 169, 1405
BstMAI GTCTC 7 cut(s) 164, 385, 773, 848, 855, 881, 978
BstMBI GATC 4 cut(s) 66, 148, 166, 1402
BstMWI GCNNNNNNNGC 4 cut(s) 820, 965, 971, 1256
BstNI CCWGG 1 cut(s) 106
BstNSI RCATGY 2 cut(s) 520, 1418
BstPI GGTNACC 1 cut(s) 499
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 791
BstUI CGCG 1 cut(s) 100
BstV1I GCAGC 8 cut(s) 274, 277, 719, 810, 883, 952, 1150, 1341
BstV2I GAAGAC 3 cut(s) 36, 485, 789
BstX2I RGATCY 1 cut(s) 1402
BstYI RGATCY 1 cut(s) 1402
Bsu15I ATCGAT 2 cut(s) 300, 600
BsuI GTATCC 1 cut(s) 241
BsuRI GGCC 1 cut(s) 1315
BsuTUI ATCGAT 2 cut(s) 300, 600
BtsCI GGATG 2 cut(s) 652, 1526
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 84, 347
Cac8I GCNNGC 4 cut(s) 538, 1371, 1422, 1449
Cfr10I RCCGGY 2 cut(s) 173, 1046
Cfr13I GGNCC 1 cut(s) 365
ClaI ATCGAT 2 cut(s) 300, 600
CseI GACGC 2 cut(s) 83, 1362
Csp6I GTAC 6 cut(s) 102, 345, 723, 902, 926, 1396
CviAII CATG 6 cut(s) 57, 132, 517, 683, 1415, 1460
CviQI GTAC 6 cut(s) 102, 345, 723, 902, 926, 1396
DdeI CTNAG 3 cut(s) 25, 859, 911
DpnI GATC 4 cut(s) 68, 150, 168, 1404
DpnII GATC 4 cut(s) 66, 148, 166, 1402
Eam1104I CTCTTC 5 cut(s) 182, 388, 1116, 1323, 1528
EarI CTCTTC 5 cut(s) 182, 388, 1116, 1323, 1528
Ecl136II GAGCTC 1 cut(s) 1170
Eco24I GRGCYC 1 cut(s) 1172
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 365
Eco53kI GAGCTC 1 cut(s) 1170
Eco57I CTGAAG 1 cut(s) 1089
Eco91I GGTNACC 1 cut(s) 499
EcoICRI GAGCTC 1 cut(s) 1170
EcoO109I RGGNCCY 1 cut(s) 365
EcoO65I GGTNACC 1 cut(s) 499
EcoRII CCWGG 1 cut(s) 104
EcoRV GATATC 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 1172
FaeI CATG 6 cut(s) 60, 135, 520, 686, 1418, 1463
FaqI GGGAC 1 cut(s) 86
FatI CATG 6 cut(s) 56, 131, 516, 682, 1414, 1459
FblI GTMKAC 1 cut(s) 452
Fnu4HI GCNGC 8 cut(s) 288, 291, 708, 824, 897, 966, 1139, 1355
FokI GGATG 2 cut(s) 659, 1513
FriOI GRGCYC 1 cut(s) 1172
Fsp4HI GCNGC 8 cut(s) 288, 291, 708, 824, 897, 966, 1139, 1355
FspBI CTAG 5 cut(s) 284, 935, 1482, 1500, 1518
GluI GCNGC 8 cut(s) 288, 291, 708, 824, 897, 966, 1139, 1355
GsuI CTGGAG 2 cut(s) 371, 1343
HaeIII GGCC 1 cut(s) 1315
HapII CCGG 3 cut(s) 174, 923, 1047
HgaI GACGC 2 cut(s) 83, 1362
Hin1II CATG 6 cut(s) 60, 135, 520, 686, 1418, 1463
HincII GTYRAC 2 cut(s) 453, 652
HindII GTYRAC 2 cut(s) 453, 652
HinfI GANTC 7 cut(s) 412, 754, 1472, 1478, 1496, 1514, 1532
HpaII CCGG 3 cut(s) 174, 923, 1047
HphI GGTGA 3 cut(s) 673, 1278, 1313
Hpy166II GTNNAC 6 cut(s) 345, 347, 453, 652, 904, 1075
Hpy188I TCNGA 8 cut(s) 166, 912, 1268, 1477, 1495, 1513, 1531, 1537
Hpy188III TCNNGA 3 cut(s) 259, 404, 469
Hpy8I GTNNAC 6 cut(s) 345, 347, 453, 652, 904, 1075
Hpy99I CGWCG 4 cut(s) 454, 1378, 1492, 1510
HpyAV CCTTC 6 cut(s) 175, 265, 466, 626, 917, 1116
HpyCH4III ACNGT 2 cut(s) 119, 795
HpyCH4IV ACGT 1 cut(s) 1099
HpyCH4V TGCA 2 cut(s) 605, 814
HpyF10VI GCNNNNNNNGC 4 cut(s) 820, 965, 971, 1256
HpyF3I CTNAG 3 cut(s) 25, 859, 911
HpySE526I ACGT 1 cut(s) 1099
Hsp92II CATG 6 cut(s) 60, 135, 520, 686, 1418, 1463
Kzo9I GATC 4 cut(s) 66, 148, 166, 1402
LguI GCTCTTC 1 cut(s) 1528
LmnI GCTCC 5 cut(s) 248, 352, 545, 820, 1362
Lsp1109I GCAGC 8 cut(s) 274, 277, 719, 810, 883, 952, 1150, 1341
LweI GCATC 2 cut(s) 592, 961
MaeI CTAG 5 cut(s) 284, 935, 1482, 1500, 1518
MaeII ACGT 1 cut(s) 1099
MaeIII GTNAC 4 cut(s) 423, 499, 569, 1042
MalI GATC 4 cut(s) 68, 150, 168, 1404
MboI GATC 4 cut(s) 66, 148, 166, 1402
MfeI CAATTG 2 cut(s) 690, 774
MflI RGATCY 1 cut(s) 1402
MhlI GDGCHC 1 cut(s) 1172
MlyI GAGTC 6 cut(s) 748, 1472, 1481, 1490, 1508, 1526
MmeI TCCRAC 1 cut(s) 138
MseI TTAA 9 cut(s) 441, 485, 624, 671, 1001, 1083, 1226, 1343, 1409
MslI CAYNNNNRTG 2 cut(s) 659, 838
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 3 cut(s) 174, 923, 1047
MspR9I CCNGG 1 cut(s) 106
MunI CAATTG 2 cut(s) 690, 774
MvaI CCWGG 1 cut(s) 106
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 4 cut(s) 820, 965, 971, 1256
NdeII GATC 4 cut(s) 66, 148, 166, 1402
NlaIII CATG 6 cut(s) 60, 135, 520, 686, 1418, 1463
NlaIV GGNNCC 4 cut(s) 244, 366, 808, 1404
NmeAIII GCCGAG 1 cut(s) 985
NmuCI GTSAC 1 cut(s) 569
NspI RCATGY 2 cut(s) 520, 1418
NspV TTCGAA 1 cut(s) 522
PciI ACATGT 1 cut(s) 516
PciSI GCTCTTC 1 cut(s) 1528
PfeI GAWTC 1 cut(s) 412
PkrI GCNGC 8 cut(s) 289, 292, 709, 825, 898, 967, 1140, 1356
PleI GAGTC 6 cut(s) 748, 1472, 1480, 1490, 1508, 1526
PpsI GAGTC 6 cut(s) 748, 1472, 1480, 1490, 1508, 1526
PpuMI RGGWCCY 1 cut(s) 365
PscI ACATGT 1 cut(s) 516
PshBI ATTAAT 1 cut(s) 1226
Psp124BI GAGCTC 1 cut(s) 1172
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 104
PspEI GGTNACC 1 cut(s) 499
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 4 cut(s) 244, 366, 808, 1404
PspPI GGNCC 1 cut(s) 365
PspPPI RGGWCCY 1 cut(s) 365
PsuI RGATCY 1 cut(s) 1402
RsaI GTAC 6 cut(s) 103, 346, 724, 903, 927, 1397
RsaNI GTAC 6 cut(s) 102, 345, 723, 902, 926, 1396
RseI CAYNNNNRTG 2 cut(s) 659, 838
SacI GAGCTC 1 cut(s) 1172
SalI GTCGAC 1 cut(s) 451
SapI GCTCTTC 1 cut(s) 1528
SaqAI TTAA 9 cut(s) 441, 485, 624, 671, 1001, 1083, 1226, 1343, 1409
SatI GCNGC 8 cut(s) 288, 291, 708, 824, 897, 966, 1139, 1355
Sau3AI GATC 4 cut(s) 66, 148, 166, 1402
Sau96I GGNCC 1 cut(s) 365
ScaI AGTACT 1 cut(s) 1397
SchI GAGTC 6 cut(s) 748, 1472, 1481, 1490, 1508, 1526
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 1172
SfaNI GCATC 2 cut(s) 592, 961
SfcI CTRYAG 1 cut(s) 791
SfuI TTCGAA 1 cut(s) 522
SinI GGWCC 1 cut(s) 365
SmiMI CAYNNNNRTG 2 cut(s) 659, 838
SmlI CTYRAG 5 cut(s) 203, 551, 623, 845, 1295
SmoI CTYRAG 5 cut(s) 203, 551, 623, 845, 1295
SsiI CCGC 1 cut(s) 293
SspI AATATT 1 cut(s) 490
SspMI CTAG 5 cut(s) 284, 935, 1482, 1500, 1518
SstI GAGCTC 1 cut(s) 1172
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 2 cut(s) 119, 795
TaiI ACGT 1 cut(s) 1102
TaqI TCGA 8 cut(s) 271, 300, 386, 452, 522, 600, 630, 762
TatI WGTACW 3 cut(s) 344, 901, 1395
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 9 cut(s) 441, 485, 624, 671, 1001, 1083, 1226, 1343, 1409
Tru9I TTAA 9 cut(s) 441, 485, 624, 671, 1001, 1083, 1226, 1343, 1409
TscAI CASTG 2 cut(s) 84, 354
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 8 cut(s) 287, 290, 707, 823, 896, 965, 1138, 1354
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 5 cut(s) 17, 404, 671, 1069, 1515
TspRI CASTG 2 cut(s) 84, 354
Vha464I CTTAAG 1 cut(s) 623
VpaK11BI GGWCC 1 cut(s) 365
VspI ATTAAT 1 cut(s) 1226
XapI RAATTY 4 cut(s) 90, 939, 1085, 1125
XceI RCATGY 2 cut(s) 520, 1418
XmiI GTMKAC 1 cut(s) 452
XspI CTAG 5 cut(s) 284, 935, 1482, 1500, 1518
ZrmI AGTACT 1 cut(s) 1397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.