FvH4_5g01330

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
818259 .. 820526
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01330.t1

Sequence Viewer

Length: 1518 bp
ATGAAAACAGAGCTGTGGTCCTCATCAAGAATATTGAAGAAAAAGAAGATGAAGCGGGACAGAATAAGCAACCTACATGATGATATTATACAACAAATCCTGTCATGTTTGCCGATCAGGGACGCAGTGAGGACAAGAATTTTGTGCCGTAAGTTGAAGTCCAAATGTGATAATCTTCCATGCCTTGTATTCGACGATCAGTGTTGTCTCTGGGATCAAGCTAGCACCACATTTGAGTGCATTGTTGATCATGTTCTTCTCTTTCAAATTGGCTCCATACACACCTTCAAGATTTCTCGTAAAGACCTAGCTGCTGTGGATCTCAATAGATGGATCTATCGTGTGTCGAAATCCTCCGTCAAGAAGTTCACACTGGAGCTGTGGAGAGGTCCTCCTTACAATGTCTCTTCCAGTTTGTTTCTGTGTAAGAATTTGGTTCATTTAGAGTTATATAATTGTGTGCTTAAACTCCCGTCGACATTCAAAGGCTTCAGGACATTGAAGATCTTATATACTCAAATGGTTACCATTGCGCAAGATGACTTCGAAAAGATGATTAGTTGCTCTCCTCAGCTTGAGAGACTGATTCTGTGTGAATTTGATGGTATCAAAAATCTCAACATTGATGCACCAAAACTCCAGTACCTTACGGTCAAAGGTGATTTTGAGGATGTTGACATTGGGATGAATACCTTAAACCTTGTTCATGTGTCCATTGAACAGCAAAAGGCAGCTCCTATCAGTTGTACCAATTTGGAAAAGTTCTTTTCTCAACTGACCCTTATCGAAAATCTCTCAATTGAGGGTGTTTTCTTAGAGTCTTCTGCTGGTGCCTTGCAAGATGAGCTGCCGAAACCTTATTTATCTCTCAAGGTTCTTCGCTTAGGCATACTCTGGAATAATATGGATGAGATTGTAGCTGCTGTACGCATTCTGAGAAGCTCTCCTGCCCTAAAAGAGCTAGAAATTTCTCTTTGCCAAGAAGCTGAGGCTGCTGATGCTAATGCTAATGCCGGAGACACAACTTTTTGGTTAAATCATATGCTAAATGATTACCAGAACTGGGAATTGACCCAACTTAGACTTGTGAAAGTATCCGGCTTCTCTGGTGTCAAAGCTGAAGTGGACTTCATCAAATATCTGCTTTTAAGGTCCCCTGCTCTTCAACAATTAGAAATTTTGGCTCAGAGACAATATGGGGATGTTAGGGGAGAAGTGAGCTCTTGGTTAGACGACAGCCAAGTCTGTGCATTCAACCAACTGCGAGTTGTGAAAGCAAGTCGCATTTCCGGTGTCAAAGCTGAAGTAGAACTCATCAGATTTCTGCTTTTAAATTCACCTGTGCTTGAGAAGATGATTCTTCGGCCACTTCACAGTTCTGGTGGTTGTCGGTTATTGAAGAAGCTGCTCATGTTTAGGCGCGCTTCGGCACAAGCACAGATAGAGTACTTGCATCCATTAAAGCTTGTACATTCCTATTCTGAGTCTGACTCTAGCTCTCCATCTGACTCGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

506

Amino Acids

57.5

Weight (kDa)

8.39

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 61 5.2e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 97 - 396 1.3e-17 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 108 - 323 3.6e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1241
Acc16I TGCGCA 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 830
AccI GTMKAC 1 cut(s) 476
AccII CGCG 1 cut(s) 1422
AciI CCGC 1 cut(s) 55
AclWI GGATC 3 cut(s) 222, 327, 341
AcoI YGGCCR 1 cut(s) 1364
AcsI RAATTY 6 cut(s) 138, 430, 596, 966, 1176, 1333
AcuI CTGAAG 3 cut(s) 475, 1140, 1323
AfaI GTAC 5 cut(s) 644, 748, 927, 1448, 1470
AfiI CCNNNNNNNGG 1 cut(s) 1063
Alw21I GWGCWC 1 cut(s) 1223
Alw26I GTCTC 5 cut(s) 212, 409, 574, 1011, 1183
AlwI GGATC 3 cut(s) 222, 327, 341
AoxI GGCC 1 cut(s) 1364
ApeKI GCWGC 6 cut(s) 311, 731, 847, 920, 992, 1405
ApoI RAATTY 6 cut(s) 138, 430, 596, 966, 1176, 1333
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
AspLEI GCGC 3 cut(s) 535, 1422, 1424
AspS9I GGNCC 3 cut(s) 18, 389, 1152
AsuHPI GGTGA 2 cut(s) 671, 1329
AsuII TTCGAA 1 cut(s) 546
AsuNHI GCTAGC 1 cut(s) 221
AvaII GGWCC 3 cut(s) 18, 389, 1152
BaeI ACNNNNGTAYC 2 cut(s) 626, 659
BanI GGYRCC 1 cut(s) 830
BanII GRGCYC 1 cut(s) 1223
BbsI GAAGAC 1 cut(s) 813
Bbv12I GWGCWC 1 cut(s) 1223
BbvCI CCTCAGC 2 cut(s) 570, 987
BbvI GCAGC 6 cut(s) 298, 743, 834, 907, 979, 1392
BccI CCATC 3 cut(s) 324, 596, 1510
BceAI ACGGC 1 cut(s) 132
BciVI GTATCC 1 cut(s) 1105
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 5 cut(s) 212, 409, 574, 1011, 1183
BfaI CTAG 4 cut(s) 222, 308, 962, 1494
BfuI GTATCC 1 cut(s) 1105
BglII AGATCT 1 cut(s) 504
BisI GCNGC 6 cut(s) 312, 732, 848, 921, 993, 1406
BlsI GCNGC 6 cut(s) 313, 733, 849, 922, 994, 1407
BmcAI AGTACT 1 cut(s) 1448
Bme18I GGWCC 3 cut(s) 18, 389, 1152
BmgT120I GGNCC 3 cut(s) 18, 389, 1152
BmiI GGNNCC 3 cut(s) 274, 832, 1154
BmrI ACTGGG 1 cut(s) 1072
BmsI GCATC 3 cut(s) 616, 988, 1462
BmtI GCTAGC 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 1072
BpiI GAAGAC 1 cut(s) 813
BplI GAGNNNNNCTC 6 cut(s) 376, 408, 928, 960, 1475, 1507
BpmI CTGGAG 2 cut(s) 395, 623
Bpu10I CCTNAGC 3 cut(s) 570, 883, 987
Bpu14I TTCGAA 1 cut(s) 546
BpuEI CTTGAG 3 cut(s) 596, 854, 1367
BsaWI WCCGGW 1 cut(s) 1289
BsaXI ACNNNNNCTCC 2 cut(s) 621, 651
Bsc4I CCNNNNNNNGG 1 cut(s) 1063
Bse1I ACTGG 4 cut(s) 378, 411, 640, 1067
Bse3DI GCAATG 1 cut(s) 528
BseGI GGATG 5 cut(s) 676, 690, 913, 1207, 1453
BseLI CCNNNNNNNGG 1 cut(s) 1063
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 5 cut(s) 584, 926, 978, 1199, 1473
BseNI ACTGG 4 cut(s) 378, 411, 640, 1067
BsePI GCGCGC 1 cut(s) 1420
BseRI GAGGAG 1 cut(s) 558
BseXI GCAGC 6 cut(s) 298, 743, 834, 907, 979, 1392
Bsh1236I CGCG 1 cut(s) 1422
BshFI GGCC 1 cut(s) 1366
BshNI GGYRCC 1 cut(s) 830
BsiHKAI GWGCWC 1 cut(s) 1223
BsiSI CCGG 3 cut(s) 1014, 1098, 1290
BslFI GGGAC 3 cut(s) 71, 134, 1138
BslI CCNNNNNNNGG 1 cut(s) 1063
BsmAI GTCTC 5 cut(s) 212, 409, 574, 1011, 1183
BsmFI GGGAC 3 cut(s) 71, 134, 1138
BsmI GAATGC 2 cut(s) 930, 1250
BsnI GGCC 1 cut(s) 1366
Bsp119I TTCGAA 1 cut(s) 546
Bsp1286I GDGCHC 1 cut(s) 1223
Bsp1407I TGTACA 1 cut(s) 1468
Bsp143I GATC 7 cut(s) 114, 196, 214, 247, 319, 333, 504
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 1366
BspCNI CTCAG 5 cut(s) 583, 927, 979, 1198, 1474
BspFNI CGCG 1 cut(s) 1422
BspLI GGNNCC 3 cut(s) 274, 832, 1154
BspOI GCTAGC 1 cut(s) 225
BspPI GGATC 3 cut(s) 222, 327, 341
BspQI GCTCTTC 1 cut(s) 1167
BspT104I TTCGAA 1 cut(s) 546
BspT107I GGYRCC 1 cut(s) 830
BsrDI GCAATG 1 cut(s) 528
BsrGI TGTACA 1 cut(s) 1468
BsrI ACTGG 4 cut(s) 378, 411, 640, 1067
BssHII GCGCGC 1 cut(s) 1420
BssMI GATC 7 cut(s) 114, 196, 214, 247, 319, 333, 504
Bst4CI ACNGT 2 cut(s) 652, 1376
Bst6I CTCTTC 2 cut(s) 412, 1167
BstAUI TGTACA 1 cut(s) 1468
BstBI TTCGAA 1 cut(s) 546
BstC8I GCNNGC 2 cut(s) 223, 1422
BstDEI CTNAG 8 cut(s) 570, 814, 883, 935, 987, 1079, 1185, 1482
BstEII GGTNACC 1 cut(s) 523
BstF5I GGATG 5 cut(s) 676, 690, 913, 1207, 1453
BstFNI CGCG 1 cut(s) 1422
BstHHI GCGC 3 cut(s) 535, 1422, 1424
BstKTI GATC 7 cut(s) 117, 199, 217, 250, 322, 336, 507
BstMAI GTCTC 5 cut(s) 212, 409, 574, 1011, 1183
BstMBI GATC 7 cut(s) 114, 196, 214, 247, 319, 333, 504
BstMWI GCNNNNNNNGC 3 cut(s) 844, 992, 998
BstPI GGTNACC 1 cut(s) 523
BstUI CGCG 1 cut(s) 1422
BstV1I GCAGC 6 cut(s) 298, 743, 834, 907, 979, 1392
BstV2I GAAGAC 1 cut(s) 813
BstX2I RGATCY 3 cut(s) 319, 333, 504
BstYI RGATCY 3 cut(s) 319, 333, 504
BsuI GTATCC 1 cut(s) 1105
BsuRI GGCC 1 cut(s) 1366
BtsCI GGATG 5 cut(s) 676, 690, 913, 1207, 1453
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 3 cut(s) 132, 206, 371
Cac8I GCNNGC 2 cut(s) 223, 1422
CfoI GCGC 3 cut(s) 535, 1422, 1424
Cfr13I GGNCC 3 cut(s) 18, 389, 1152
CseI GACGC 1 cut(s) 131
Csp6I GTAC 5 cut(s) 643, 747, 926, 1447, 1469
CviAII CATG 6 cut(s) 77, 105, 180, 251, 707, 1411
CviQI GTAC 5 cut(s) 643, 747, 926, 1447, 1469
DdeI CTNAG 8 cut(s) 570, 814, 883, 935, 987, 1079, 1185, 1482
DpnI GATC 7 cut(s) 116, 198, 216, 249, 321, 335, 506
DpnII GATC 7 cut(s) 114, 196, 214, 247, 319, 333, 504
DraI TTTAAA 1 cut(s) 1332
DrdI GACNNNNNNGTC 1 cut(s) 1241
DseDI GACNNNNNNGTC 1 cut(s) 1241
EaeI YGGCCR 1 cut(s) 1364
Eam1104I CTCTTC 2 cut(s) 412, 1167
EarI CTCTTC 2 cut(s) 412, 1167
Ecl136II GAGCTC 1 cut(s) 1221
Eco24I GRGCYC 1 cut(s) 1223
Eco47I GGWCC 3 cut(s) 18, 389, 1152
Eco53kI GAGCTC 1 cut(s) 1221
Eco57I CTGAAG 3 cut(s) 475, 1140, 1323
Eco91I GGTNACC 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 1221
EcoO109I RGGNCCY 2 cut(s) 389, 1152
EcoO65I GGTNACC 1 cut(s) 523
EcoT38I GRGCYC 1 cut(s) 1223
FaeI CATG 6 cut(s) 80, 108, 183, 254, 710, 1414
FaqI GGGAC 3 cut(s) 71, 134, 1138
FatI CATG 6 cut(s) 76, 104, 179, 250, 706, 1410
FauI CCCGC 1 cut(s) 48
FauNDI CATATG 1 cut(s) 1041
FbaI TGATCA 1 cut(s) 247
FblI GTMKAC 1 cut(s) 476
Fnu4HI GCNGC 6 cut(s) 312, 732, 848, 921, 993, 1406
FokI GGATG 5 cut(s) 683, 697, 920, 1214, 1440
FriOI GRGCYC 1 cut(s) 1223
Fsp4HI GCNGC 6 cut(s) 312, 732, 848, 921, 993, 1406
FspBI CTAG 4 cut(s) 222, 308, 962, 1494
FspI TGCGCA 1 cut(s) 534
GlaI GCGC 3 cut(s) 534, 1421, 1423
GluI GCNGC 6 cut(s) 312, 732, 848, 921, 993, 1406
GsuI CTGGAG 2 cut(s) 395, 623
HaeIII GGCC 1 cut(s) 1366
HapII CCGG 3 cut(s) 1014, 1098, 1290
HgaI GACGC 1 cut(s) 131
HhaI GCGC 3 cut(s) 535, 1422, 1424
Hin1II CATG 6 cut(s) 80, 108, 183, 254, 710, 1414
Hin6I GCGC 3 cut(s) 533, 1420, 1422
HinP1I GCGC 3 cut(s) 533, 1420, 1422
HincII GTYRAC 2 cut(s) 477, 676
HindII GTYRAC 2 cut(s) 477, 676
HindIII AAGCTT 1 cut(s) 1463
HinfI GANTC 6 cut(s) 586, 818, 1357, 1484, 1490, 1508
HpaII CCGG 3 cut(s) 1014, 1098, 1290
HphI GGTGA 2 cut(s) 671, 1329
Hpy166II GTNNAC 4 cut(s) 369, 477, 676, 1126
Hpy188I TCNGA 7 cut(s) 936, 1188, 1319, 1483, 1489, 1507, 1513
Hpy188III TCNNGA 5 cut(s) 27, 289, 361, 493, 895
Hpy8I GTNNAC 4 cut(s) 369, 477, 676, 1126
Hpy99I CGWCG 2 cut(s) 197, 478
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 2 cut(s) 652, 1376
HpyCH4V TGCA 5 cut(s) 240, 629, 838, 1250, 1453
HpyF10VI GCNNNNNNNGC 3 cut(s) 844, 992, 998
HpyF3I CTNAG 8 cut(s) 570, 814, 883, 935, 987, 1079, 1185, 1482
Hsp92II CATG 6 cut(s) 80, 108, 183, 254, 710, 1414
HspAI GCGC 3 cut(s) 533, 1420, 1422
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 7 cut(s) 114, 196, 214, 247, 319, 333, 504
LguI GCTCTTC 1 cut(s) 1167
LmnI GCTCC 3 cut(s) 278, 376, 739
Lsp1109I GCAGC 6 cut(s) 298, 743, 834, 907, 979, 1392
LweI GCATC 3 cut(s) 616, 988, 1462
MaeI CTAG 4 cut(s) 222, 308, 962, 1494
MaeIII GTNAC 1 cut(s) 523
MalI GATC 7 cut(s) 116, 198, 216, 249, 321, 335, 506
MboI GATC 7 cut(s) 114, 196, 214, 247, 319, 333, 504
MfeI CAATTG 1 cut(s) 798
MflI RGATCY 3 cut(s) 319, 333, 504
MhlI GDGCHC 1 cut(s) 1223
MlyI GAGTC 4 cut(s) 827, 1484, 1493, 1502
MnlI CCTC 9 cut(s) 31, 123, 364, 380, 402, 579, 661, 796, 982
MseI TTAA 6 cut(s) 465, 695, 1034, 1148, 1331, 1460
MslI CAYNNNNRTG 2 cut(s) 235, 683
MspI CCGG 3 cut(s) 1014, 1098, 1290
MunI CAATTG 1 cut(s) 798
Mva1269I GAATGC 2 cut(s) 930, 1250
MvnI CGCG 1 cut(s) 1422
MwoI GCNNNNNNNGC 3 cut(s) 844, 992, 998
NdeI CATATG 1 cut(s) 1041
NdeII GATC 7 cut(s) 114, 196, 214, 247, 319, 333, 504
NheI GCTAGC 1 cut(s) 221
NlaIII CATG 6 cut(s) 80, 108, 183, 254, 710, 1414
NlaIV GGNNCC 3 cut(s) 274, 832, 1154
NsbI TGCGCA 1 cut(s) 534
NspV TTCGAA 1 cut(s) 546
PauI GCGCGC 1 cut(s) 1420
PciSI GCTCTTC 1 cut(s) 1167
PctI GAATGC 2 cut(s) 930, 1250
PfeI GAWTC 2 cut(s) 586, 1357
PkrI GCNGC 6 cut(s) 313, 733, 849, 922, 994, 1407
PleI GAGTC 4 cut(s) 826, 1484, 1492, 1502
PpsI GAGTC 4 cut(s) 826, 1484, 1492, 1502
PpuMI RGGWCCY 2 cut(s) 389, 1152
Psp124BI GAGCTC 1 cut(s) 1223
Psp5II RGGWCCY 2 cut(s) 389, 1152
PspEI GGTNACC 1 cut(s) 523
PspN4I GGNNCC 3 cut(s) 274, 832, 1154
PspPI GGNCC 3 cut(s) 18, 389, 1152
PspPPI RGGWCCY 2 cut(s) 389, 1152
PsuI RGATCY 3 cut(s) 319, 333, 504
PteI GCGCGC 1 cut(s) 1420
RsaI GTAC 5 cut(s) 644, 748, 927, 1448, 1470
RsaNI GTAC 5 cut(s) 643, 747, 926, 1447, 1469
RseI CAYNNNNRTG 2 cut(s) 235, 683
SacI GAGCTC 1 cut(s) 1223
SalI GTCGAC 1 cut(s) 475
SapI GCTCTTC 1 cut(s) 1167
SaqAI TTAA 6 cut(s) 465, 695, 1034, 1148, 1331, 1460
SatI GCNGC 6 cut(s) 312, 732, 848, 921, 993, 1406
Sau3AI GATC 7 cut(s) 114, 196, 214, 247, 319, 333, 504
Sau96I GGNCC 3 cut(s) 18, 389, 1152
ScaI AGTACT 1 cut(s) 1448
SchI GAGTC 4 cut(s) 827, 1484, 1493, 1502
SduI GDGCHC 1 cut(s) 1223
SfaNI GCATC 3 cut(s) 616, 988, 1462
SfuI TTCGAA 1 cut(s) 546
SinI GGWCC 3 cut(s) 18, 389, 1152
SmiMI CAYNNNNRTG 2 cut(s) 235, 683
SmlI CTYRAG 3 cut(s) 575, 869, 1346
SmoI CTYRAG 3 cut(s) 575, 869, 1346
SsiI CCGC 1 cut(s) 55
SspI AATATT 1 cut(s) 33
SspMI CTAG 4 cut(s) 222, 308, 962, 1494
SstI GAGCTC 1 cut(s) 1223
TaaI ACNGT 2 cut(s) 652, 1376
TaqI TCGA 5 cut(s) 192, 347, 476, 546, 786
TatI WGTACW 2 cut(s) 1446, 1468
TfiI GAWTC 2 cut(s) 586, 1357
Tru1I TTAA 6 cut(s) 465, 695, 1034, 1148, 1331, 1460
Tru9I TTAA 6 cut(s) 465, 695, 1034, 1148, 1331, 1460
TscAI CASTG 3 cut(s) 132, 206, 378
TseI GCWGC 6 cut(s) 311, 731, 847, 920, 992, 1405
TspDTI ATGAA 6 cut(s) 17, 65, 428, 695, 701, 1120
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 3 cut(s) 132, 206, 378
VpaK11BI GGWCC 3 cut(s) 18, 389, 1152
XapI RAATTY 6 cut(s) 138, 430, 596, 966, 1176, 1333
XmiI GTMKAC 1 cut(s) 476
XspI CTAG 4 cut(s) 222, 308, 962, 1494
ZrmI AGTACT 1 cut(s) 1448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.