Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Forward (+)

21626903 .. 21627637

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGACTACTAATACTGACCATATGGTTTTCTTGATTGACACTGTCCGGATCAGAAGCGAACGTCCACAAAGGCGTAAAAGTGCTGATATCGATCCTCAAGCCGTGATTGGCTCTGCCGTTGCCGACGCTGAACCAGACATCAATGTGGAGCATCTCCTTGCTGCTGGACTCGTGGTTGAAGAGTTTGAAGTCGGCGTTGATGTCCGGCATGCCCAAAATCTAATCCAGCAACAGCAGAGCCGCCATGGATGCCTGATCGAGGCCTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

10.09

Weight (kDa)

5.19

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	45
AciI	CCGC	1 cut(s)	241
AclWI	GGATC	2 cut(s)	56, 86
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	179, 188
AjnI	CCWGG	1 cut(s)	263
AlwI	GGATC	2 cut(s)	56, 86
Aor13HI	TCCGGA	1 cut(s)	45
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	161
BauI	CACGAG	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	148
BceAI	ACGGC	2 cut(s)	86, 101
BciT130I	CCWGG	1 cut(s)	265
BisI	GCNGC	2 cut(s)	162, 241
BlsI	GCNGC	2 cut(s)	163, 242
Bme1390I	CCNGG	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	265
BmsI	GCATC	2 cut(s)	160, 239
BpuEI	CTTGAG	1 cut(s)	81
Bsa29I	ATCGAT	1 cut(s)	90
BsaBI	GATNNNNATC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse8I	GATNNNNATC	1 cut(s)	90
BseAI	TCCGGA	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	265
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	254
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	46, 205
BslI	CCNNNNNNNGG	1 cut(s)	259
BsnI	GGCC	1 cut(s)	263
Bsp13I	TCCGGA	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	48, 91, 255
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	1 cut(s)	263
BspDI	ATCGAT	1 cut(s)	90
BspEI	TCCGGA	1 cut(s)	45
BspPI	GGATC	2 cut(s)	56, 86
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	3 cut(s)	48, 91, 255
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	244
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	244
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	254
BstKTI	GATC	3 cut(s)	51, 94, 258
BstMBI	GATC	3 cut(s)	48, 91, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstNI	CCWGG	1 cut(s)	265
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	210
ClaI	ATCGAT	1 cut(s)	90
CseI	GACGC	1 cut(s)	134
CviAII	CATG	2 cut(s)	209, 245
CviJI	RGCY	4 cut(s)	101, 111, 240, 263
CviKI_1	RGCY	4 cut(s)	101, 111, 240, 263
DpnI	GATC	3 cut(s)	50, 93, 257
DpnII	GATC	3 cut(s)	48, 91, 255
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	263
Eco32I	GATATC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	263
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	2 cut(s)	212, 248
FaiI	YATR	4 cut(s)	21, 23, 210, 246
FatI	CATG	2 cut(s)	208, 244
FauNDI	CATATG	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	162, 241
FokI	GGATG	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	162, 241
GluI	GCNGC	2 cut(s)	162, 241
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	2 cut(s)	46, 205
HgaI	GACGC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	212, 248
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	2 cut(s)	46, 205
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	2 cut(s)	31, 46
Hpy8I	GTNNAC	1 cut(s)	65
Hpy99I	CGWCG	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	212, 248
Kpn2I	TCCGGA	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	48, 91, 255
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	7 cut(s)	59, 147, 150, 218, 239, 250, 266
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	2 cut(s)	160, 239
MaeII	ACGT	1 cut(s)	61
MalI	GATC	3 cut(s)	50, 93, 257
MboI	GATC	3 cut(s)	48, 91, 255
MboII	GAAGA	1 cut(s)	191
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	2 cut(s)	105, 253
MroI	TCCGGA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	2 cut(s)	46, 205
MspR9I	CCNGG	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	249
NcoI	CCATGG	1 cut(s)	244
NdeI	CATATG	1 cut(s)	21
NdeII	GATC	3 cut(s)	48, 91, 255
NlaIII	CATG	2 cut(s)	212, 248
NspI	RCATGY	1 cut(s)	212
PaeI	GCATGC	1 cut(s)	212
PceI	AGGCCT	1 cut(s)	263
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	163, 242
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	263
PsyI	GACNNNGTC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	143
SatI	GCNGC	2 cut(s)	162, 241
Sau3AI	GATC	3 cut(s)	48, 91, 255
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	265
SetI	ASST	1 cut(s)	64
SfaNI	GCATC	2 cut(s)	160, 239
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
SphI	GCATGC	1 cut(s)	212
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	1 cut(s)	241
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	263
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	2 cut(s)	90, 258
TauI	GCSGC	1 cut(s)	243
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	1 cut(s)	161
TspRI	CASTG	1 cut(s)	46
Tth111I	GACNNNGTC	1 cut(s)	41
XagI	CCTNNNNNAGG	1 cut(s)	257
XceI	RCATGY	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.