Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Reverse (-)

35302214 .. 35302990

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG297400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGACGACGATGCCACCGAGTACTATCAGCCAATCTCCGCCGTTGATTCCAAAGATGACGACGAGGATCAGCATCTCCATTACCGCCATTGCCCTCTACCTCACCATCTCCGTCCTCCTCCAACTCCTCCTCGCCCTCCTCCGCTGCCCGGGTCGACCCATCCCTCTCAGACCCATCCCCACCCTCCGCTCCGTCCTCCTCCAACTCTTCCTCGCCCTCCTCCGCTGCCCGGGTCGACCCATCCCTCTCAGACCCATCCCCACCCTCCGCTCCGTCCTCCTCCAACTCCTCCTCGCCCTCCTCCGCTGCCTGGGTCGACCCATCCCTCTCAGACCCATCCCCACCCTCCGCTCAGTCCTCATCCAACTCTTCCTCGCCCTCCTCCTCTGCCCGGGTCGACCCATCCCTCTCAGACCTATCTCCACCCTCTGCTCTGTCCTCCTCCAACTCTTCCTCGCCCTCCTCCGCTGCCCGGGTCGACCCATCCCTCTCAGACCCATCCCCACCCTCTGCTCCGTCCTCCTCCAACTCTTCCTCGCCCTCCTCCGCTGCCCGGGTCGACCCATCCCCACCCTCCGCTCCCTCCTCATGACCCTCCTCTCCTTCACCATCTTAGTCGGCATCAACCTCTTCCGGTGGTTCTTGCAGCGCTCCAAAACCCATGAAATTGATGGTGAGATTCAAATAGATTGGGTTAGAGAAATGAAAGGGGAATCAAGGAAAACAAGATTGGAGGAAATTGAAAGGAGTGATGGATTTAGAAGGGAAAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

29.15

Weight (kDa)

11.59

Isoelectric Point (pI)

68.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	4 cut(s)	189, 270, 351, 579
AccI	GTMKAC	6 cut(s)	154, 235, 316, 397, 478, 559
AclWI	GGATC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	22
AfeI	AGCGCT	1 cut(s)	650
AfiI	CCNNNNNNNGG	6 cut(s)	148, 229, 310, 391, 472, 553
AgsI	TTSAA	2 cut(s)	683, 743
AjnI	CCWGG	1 cut(s)	309
AjuI	GAANNNNNNNTTGG	2 cut(s)	713, 745
AlwI	GGATC	1 cut(s)	74
Ama87I	CYCGRG	5 cut(s)	148, 229, 391, 472, 553
Aor51HI	AGCGCT	1 cut(s)	650
ApeKI	GCWGC	6 cut(s)	144, 225, 306, 468, 549, 646
AspLEI	GCGC	1 cut(s)	651
AsuHPI	GGTGA	3 cut(s)	94, 598, 686
AvaI	CYCGRG	5 cut(s)	148, 229, 391, 472, 553
BbvI	GCAGC	6 cut(s)	131, 212, 293, 455, 536, 658
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	311
BfoI	RGCGCY	1 cut(s)	652
BisI	GCNGC	6 cut(s)	145, 226, 307, 469, 550, 647
BlsI	GCNGC	6 cut(s)	146, 227, 308, 470, 551, 648
BmcAI	AGTACT	1 cut(s)	22
BmeT110I	CYCGRG	5 cut(s)	148, 229, 391, 472, 553
BmsI	GCATC	2 cut(s)	81, 630
BsaBI	GATNNNNATC	1 cut(s)	71
BsaJI	CCNNGG	6 cut(s)	148, 229, 310, 391, 472, 553
BsaWI	WCCGGW	1 cut(s)	633
Bsc4I	CCNNNNNNNGG	6 cut(s)	148, 229, 310, 391, 472, 553
Bse3DI	GCAATG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	6 cut(s)	148, 229, 310, 391, 472, 553
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	6 cut(s)	148, 229, 310, 391, 472, 553
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	6 cut(s)	181, 262, 343, 366, 424, 505
BseXI	GCAGC	6 cut(s)	131, 212, 293, 455, 536, 658
BsiHKCI	CYCGRG	5 cut(s)	148, 229, 391, 472, 553
BsiSI	CCGG	6 cut(s)	149, 230, 392, 473, 554, 634
BslI	CCNNNNNNNGG	6 cut(s)	148, 229, 310, 391, 472, 553
BsoBI	CYCGRG	5 cut(s)	148, 229, 391, 472, 553
Bsp143I	GATC	1 cut(s)	66
BspCNI	CTCAG	6 cut(s)	180, 261, 342, 365, 423, 504
BspHI	TCATGA	1 cut(s)	588
BspPI	GGATC	1 cut(s)	74
BsrBI	CCGCTC	4 cut(s)	189, 270, 351, 579
BsrDI	GCAATG	1 cut(s)	87
BssECI	CCNNGG	6 cut(s)	148, 229, 310, 391, 472, 553
BssMI	GATC	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	311
Bst6I	CTCTTC	5 cut(s)	212, 374, 455, 536, 635
BstDEI	CTNAG	7 cut(s)	167, 248, 329, 352, 410, 491, 613
BstH2I	RGCGCY	1 cut(s)	652
BstHHI	GCGC	1 cut(s)	651
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstNI	CCWGG	1 cut(s)	311
BstV1I	GCAGC	6 cut(s)	131, 212, 293, 455, 536, 658
CciI	TCATGA	1 cut(s)	588
CfoI	GCGC	1 cut(s)	651
Cfr9I	CCCGGG	5 cut(s)	148, 229, 391, 472, 553
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	2 cut(s)	589, 662
CviJI	RGCY	1 cut(s)	30
CviKI_1	RGCY	1 cut(s)	30
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	7 cut(s)	167, 248, 329, 352, 410, 491, 613
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	5 cut(s)	212, 374, 455, 536, 635
EarI	CTCTTC	5 cut(s)	212, 374, 455, 536, 635
EciI	GGCGGA	1 cut(s)	27
Eco47III	AGCGCT	1 cut(s)	650
Eco88I	CYCGRG	5 cut(s)	148, 229, 391, 472, 553
EcoRII	CCWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	592, 665
FaiI	YATR	2 cut(s)	590, 663
FatI	CATG	2 cut(s)	588, 661
FblI	GTMKAC	6 cut(s)	154, 235, 316, 397, 478, 559
Fnu4HI	GCNGC	6 cut(s)	145, 226, 307, 469, 550, 647
Fsp4HI	GCNGC	6 cut(s)	145, 226, 307, 469, 550, 647
GlaI	GCGC	1 cut(s)	650
GluI	GCNGC	6 cut(s)	145, 226, 307, 469, 550, 647
HaeII	RGCGCY	1 cut(s)	652
HapII	CCGG	6 cut(s)	149, 230, 392, 473, 554, 634
HhaI	GCGC	1 cut(s)	651
Hin1II	CATG	2 cut(s)	592, 665
Hin6I	GCGC	1 cut(s)	649
HinP1I	GCGC	1 cut(s)	649
HincII	GTYRAC	6 cut(s)	155, 236, 317, 398, 479, 560
HindII	GTYRAC	6 cut(s)	155, 236, 317, 398, 479, 560
HinfI	GANTC	3 cut(s)	46, 679, 713
HpaII	CCGG	6 cut(s)	149, 230, 392, 473, 554, 634
HphI	GGTGA	3 cut(s)	94, 598, 686
Hpy166II	GTNNAC	6 cut(s)	155, 236, 317, 398, 479, 560
Hpy188I	TCNGA	5 cut(s)	170, 251, 332, 413, 494
Hpy188III	TCNNGA	1 cut(s)	589
Hpy8I	GTNNAC	6 cut(s)	155, 236, 317, 398, 479, 560
Hpy99I	CGWCG	2 cut(s)	10, 64
HpyAV	CCTTC	2 cut(s)	613, 756
HpyCH4V	TGCA	1 cut(s)	646
HpyF3I	CTNAG	7 cut(s)	167, 248, 329, 352, 410, 491, 613
Hsp92II	CATG	2 cut(s)	592, 665
HspAI	GCGC	1 cut(s)	649
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	5 cut(s)	194, 275, 518, 584, 656
LpnPI	CCDG	8 cut(s)	162, 243, 296, 323, 405, 486, 567, 647
Lsp1109I	GCAGC	6 cut(s)	131, 212, 293, 455, 536, 658
LweI	GCATC	2 cut(s)	81, 630
MalI	GATC	1 cut(s)	68
MbiI	CCGCTC	4 cut(s)	189, 270, 351, 579
MboI	GATC	1 cut(s)	66
MboII	GAAGA	5 cut(s)	199, 361, 442, 523, 622
MluCI	AATT	3 cut(s)	666, 738, 772
MmeI	TCCRAC	6 cut(s)	145, 226, 307, 388, 469, 550
MspA1I	CMGCKG	5 cut(s)	144, 225, 306, 468, 549
MspI	CCGG	6 cut(s)	149, 230, 392, 473, 554, 634
MvaI	CCWGG	1 cut(s)	311
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	2 cut(s)	592, 665
PagI	TCATGA	1 cut(s)	588
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	46, 679, 713
PkrI	GCNGC	6 cut(s)	146, 227, 308, 470, 551, 648
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SalI	GTCGAC	6 cut(s)	153, 234, 315, 396, 477, 558
SatI	GCNGC	6 cut(s)	145, 226, 307, 469, 550, 647
Sau3AI	GATC	1 cut(s)	66
ScaI	AGTACT	1 cut(s)	22
SetI	ASST	3 cut(s)	102, 418, 630
SfaNI	GCATC	2 cut(s)	81, 630
SmaI	CCCGGG	5 cut(s)	150, 231, 393, 474, 555
Sse9I	AATT	3 cut(s)	666, 738, 772
TaqI	TCGA	6 cut(s)	154, 235, 316, 397, 478, 559
TasI	AATT	3 cut(s)	666, 738, 772
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	3 cut(s)	46, 679, 713
TseI	GCWGC	6 cut(s)	144, 225, 306, 468, 549, 646
TspDTI	ATGAA	2 cut(s)	678, 719
TspGWI	ACGGA	4 cut(s)	100, 181, 262, 505
TspMI	CCCGGG	5 cut(s)	148, 229, 391, 472, 553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XmaI	CCCGGG	5 cut(s)	148, 229, 391, 472, 553
XmiI	GTMKAC	6 cut(s)	154, 235, 316, 397, 478, 559
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.