Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005044.1

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Forward (+)

94502 .. 94912

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005044.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgagcgtacacgaacctcatcttgtaccggttccccttggtgactccggggatgagattctcgacgtgcgagagggcggtcctgatggcggcgctggtcttgcgagtgccgaaccaggcctcgatcttgagcttgcgctggctggtctcctcgtccttgatgagctggaaatcaaagttgaggtgcttgaagttgcgaacgagcttgccgcgcgggccttccacctcgatgatcttcgcgtggaccttgatcctcaccccgtcgggaatgtccatggtctccgacgaaagaatggtcttcatgatgactcggtttctctgagggtctcggcggctccgacttgtgggaagtgtgagatttgggagaggcaggaaaacctagcggagcttttatatataaagagatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.65

Weight (kDa)

4.62

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	212, 214, 240
AciI	CCGC	6 cut(s)	78, 90, 210, 214, 332, 383
AclWI	GGATC	1 cut(s)	245
AfaI	GTAC	2 cut(s)	9, 27
AfiI	CCNNNNNNNGG	2 cut(s)	89, 344
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	191
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	4 cut(s)	133, 166, 205, 388
AluI	AGCT	4 cut(s)	133, 166, 205, 388
Alw26I	GTCTC	3 cut(s)	152, 284, 331
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	2 cut(s)	118, 216
ArsI	GACNNNNNNTTYG	2 cut(s)	280, 312
AsiGI	ACCGGT	1 cut(s)	28
AspLEI	GCGC	3 cut(s)	95, 139, 214
AspS9I	GGNCC	3 cut(s)	80, 216, 244
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	53, 248
AvaII	GGWCC	2 cut(s)	80, 244
BbsI	GAAGAC	1 cut(s)	290
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	3 cut(s)	152, 284, 331
BfaI	CTAG	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	96
BglI	GCCNNNNNGGC	1 cut(s)	215
BisI	GCNGC	3 cut(s)	91, 210, 333
BlsI	GCNGC	3 cut(s)	92, 211, 334
Bme1390I	CCNGG	2 cut(s)	49, 117
Bme18I	GGWCC	2 cut(s)	80, 244
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	3 cut(s)	80, 216, 244
BmiI	GGNNCC	2 cut(s)	33, 336
BmrFI	CCNGG	2 cut(s)	49, 117
BpiI	GAAGAC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	49
BsaI	GGTCTC	3 cut(s)	152, 284, 331
BsaJI	CCNNGG	3 cut(s)	37, 48, 274
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 344
Bse118I	RCCGGY	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	37, 48, 274
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	89, 344
BseMII	CTCAG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	140
Bsh1236I	CGCG	3 cut(s)	212, 214, 240
BshFI	GGCC	2 cut(s)	120, 218
BshTI	ACCGGT	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	29, 48
BslI	CCNNNNNNNGG	2 cut(s)	89, 344
BsmAI	GTCTC	3 cut(s)	152, 284, 331
BsnI	GGCC	2 cut(s)	120, 218
Bso31I	GGTCTC	3 cut(s)	152, 284, 331
Bsp143I	GATC	3 cut(s)	124, 232, 250
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	6 cut(s)	78, 90, 210, 214, 332, 383
BspANI	GGCC	2 cut(s)	120, 218
BspCNI	CTCAG	1 cut(s)	312
BspFNI	CGCG	3 cut(s)	212, 214, 240
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	33, 336
BspPI	GGATC	1 cut(s)	245
BspTNI	GGTCTC	3 cut(s)	152, 284, 331
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	37, 48, 274
BssMI	GATC	3 cut(s)	124, 232, 250
BssT1I	CCWWGG	2 cut(s)	37, 274
Bst2UI	CCWGG	1 cut(s)	117
BstC8I	GCNNGC	4 cut(s)	135, 141, 207, 216
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	3 cut(s)	212, 214, 240
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	3 cut(s)	95, 139, 214
BstKTI	GATC	3 cut(s)	127, 235, 253
BstMAI	GTCTC	3 cut(s)	152, 284, 331
BstMBI	GATC	3 cut(s)	124, 232, 250
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 211, 215
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	2 cut(s)	47, 115
BstUI	CGCG	3 cut(s)	212, 214, 240
BstV2I	GAAGAC	1 cut(s)	290
BsuRI	GGCC	2 cut(s)	120, 218
BtgI	CCRYGG	1 cut(s)	274
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	58
Cac8I	GCNNGC	4 cut(s)	135, 141, 207, 216
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	3 cut(s)	95, 139, 214
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	3 cut(s)	80, 216, 244
Csp6I	GTAC	2 cut(s)	8, 26
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	2 cut(s)	275, 302
CviJI	RGCY	8 cut(s)	120, 133, 143, 166, 205, 218, 335, 388
CviKI_1	RGCY	8 cut(s)	120, 133, 143, 166, 205, 218, 335, 388
CviQI	GTAC	2 cut(s)	8, 26
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	3 cut(s)	126, 234, 252
DpnII	GATC	3 cut(s)	124, 232, 250
Eco130I	CCWWGG	2 cut(s)	37, 274
Eco147I	AGGCCT	1 cut(s)	120
Eco31I	GGTCTC	3 cut(s)	152, 284, 331
Eco47I	GGWCC	2 cut(s)	80, 244
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	2 cut(s)	37, 274
ErhI	CCWWGG	2 cut(s)	37, 274
FaeI	CATG	2 cut(s)	278, 305
FaiI	YATR	5 cut(s)	276, 303, 394, 396, 398
FatI	CATG	2 cut(s)	274, 301
FauI	CCCGC	1 cut(s)	207
Fnu4HI	GCNGC	3 cut(s)	91, 210, 333
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	3 cut(s)	91, 210, 333
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	3 cut(s)	94, 138, 213
GluI	GCNGC	3 cut(s)	91, 210, 333
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	120, 218
HapII	CCGG	2 cut(s)	29, 48
HhaI	GCGC	3 cut(s)	95, 139, 214
Hin1II	CATG	2 cut(s)	278, 305
Hin6I	GCGC	3 cut(s)	93, 137, 212
HinP1I	GCGC	3 cut(s)	93, 137, 212
HinfI	GANTC	3 cut(s)	44, 58, 308
HpaII	CCGG	2 cut(s)	29, 48
HphI	GGTGA	2 cut(s)	53, 248
Hpy166II	GTNNAC	2 cut(s)	10, 244
Hpy188I	TCNGA	3 cut(s)	284, 321, 339
Hpy188III	TCNNGA	5 cut(s)	62, 83, 128, 265, 302
Hpy8I	GTNNAC	2 cut(s)	10, 244
Hpy99I	CGWCG	3 cut(s)	68, 266, 288
HpyAV	CCTTC	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 211, 215
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	278, 305
HspAI	GCGC	3 cut(s)	93, 137, 212
Kzo9I	GATC	3 cut(s)	124, 232, 250
LmnI	GCTCC	2 cut(s)	340, 385
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	3 cut(s)	126, 234, 252
MboI	GATC	3 cut(s)	124, 232, 250
MboII	GAAGA	2 cut(s)	227, 290
MlyI	GAGTC	2 cut(s)	38, 302
MmeI	TCCRAC	2 cut(s)	307, 362
MnlI	CCTC	9 cut(s)	27, 67, 131, 161, 175, 236, 264, 315, 360
MseI	TTAA	1 cut(s)	409
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	2 cut(s)	29, 48
MspR9I	CCNGG	2 cut(s)	49, 117
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	3 cut(s)	212, 214, 240
MwoI	GCNNNNNNNGC	3 cut(s)	101, 211, 215
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	3 cut(s)	124, 232, 250
NlaIII	CATG	2 cut(s)	278, 305
NlaIV	GGNNCC	2 cut(s)	33, 336
NmeAIII	GCCGAG	1 cut(s)	308
NmuCI	GTSAC	1 cut(s)	41
PagI	TCATGA	1 cut(s)	301
PceI	AGGCCT	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	58
PinAI	ACCGGT	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	92, 211, 334
PleI	GAGTC	2 cut(s)	38, 302
PpsI	GAGTC	2 cut(s)	38, 302
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	33, 336
PspPI	GGNCC	3 cut(s)	80, 216, 244
RsaI	GTAC	2 cut(s)	9, 27
RsaNI	GTAC	2 cut(s)	8, 26
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	3 cut(s)	91, 210, 333
Sau3AI	GATC	3 cut(s)	124, 232, 250
Sau96I	GGNCC	3 cut(s)	80, 216, 244
SchI	GAGTC	2 cut(s)	38, 302
ScrFI	CCNGG	2 cut(s)	49, 117
SinI	GGWCC	2 cut(s)	80, 244
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	6 cut(s)	78, 90, 210, 214, 332, 383
SspMI	CTAG	1 cut(s)	380
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	47, 115
StyI	CCWWGG	2 cut(s)	37, 274
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	3 cut(s)	63, 123, 228
TauI	GCSGC	3 cut(s)	93, 212, 335
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	290
VpaK11BI	GGWCC	2 cut(s)	80, 244
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.