Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002187.1

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Forward (+)

283912 .. 287340

Gene Structure 3429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002187.1_g000066.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atggcaacatggacaccagtcctgctagcccatgcaataatgagcataaagtcagtgttacctggatcgcggatcgtttcggtacggaaacgcgatactggtacgcgaatcattagaactcgagtttcagatcggatcgctggaatctgcgatccagttcgcgaacgcatcgtgttctgggttgtgcgatccgtatcgcggatctccggcaaaccgagcgatctcagtaacactcacctgcttataagccataggtatcatggagttccccctgaaaatgaacagcaacaaaccctgtgctttctcctacttcccggtgattgctctgctcaatctacaatattgagtatcgactcggtgacgcaagagatcacaacacaagcccttatccgtaaagcaagaagtccttttctgaaaggcagagaaaagagccttgtgacgaggttggtgctctccttgtccacatcgtttgagaagaagtcacgtcaagggacgccccgacgactgcaccccacgatgctgcatttcttcgtgatcgccaccattgggaagtccagcgcaaacccttaccaaaaggtttacgttaactgcccgaagcacaagacctccagttacagaccgcactttcgtgcagactgtagtggtctttcggaagaacaagtgattcaaagattttctctcagttcaccaacacctgacatgtcgattgagcagggaagaaatcagctgcccgctactgagggcgagaattctgctactgtcttgcccaatgaggtggtcaatgctcccgcgactaccatggccgctacggttggtgaaataaccgaagctgacgagttcgaagccctcatcatcccagaaggtactagtattgatgaacgactccgcatccttacgaacgacagtgacaaatatcggaagcagctggctacttcgatcgtgaggacggaacaacgtcttcgtgattttgaacagcgaatgaacaagaatgcccaggaagctagggtacacgcaaataggattgctgataaaaatctcacacaataccaggagcttctgagtgctgttaatgctgttaacacccaaagcaaggatactgcggccgacatcacggctatgcgcaaagaggtcgggttccaatcttgcgacccaagttgccatgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

388

Amino Acids

43.28

Weight (kDa)

9.41

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AarI	CACCTGC	1 cut(s)	246
Acc16I	TGCGCA	1 cut(s)	1121
Acc36I	ACCTGC	1 cut(s)	246
AccII	CGCG	6 cut(s)	70, 93, 106, 162, 199, 791
AciI	CCGC	8 cut(s)	70, 199, 620, 732, 789, 804, 886, 1100
AclWI	GGATC	6 cut(s)	73, 80, 143, 146, 183, 209
AcoI	YGGCCR	2 cut(s)	801, 1101
AcsI	RAATTY	1 cut(s)	748
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	4 cut(s)	84, 103, 865, 1008
AfiI	CCNNNNNNNGG	3 cut(s)	198, 546, 1090
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	2 cut(s)	668, 971
AhlI	ACTAGT	1 cut(s)	866
AjiI	CACGTC	1 cut(s)	485
AjnI	CCWGG	3 cut(s)	61, 993, 1047
AleI	CACNNNNGTG	1 cut(s)	627
AluBI	AGCT	5 cut(s)	727, 830, 925, 1001, 1054
AluI	AGCT	5 cut(s)	727, 830, 925, 1001, 1054
Alw21I	GWGCWC	1 cut(s)	453
AlwI	GGATC	6 cut(s)	73, 80, 143, 146, 183, 209
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	2 cut(s)	801, 1101
ApeKI	GCWGC	3 cut(s)	520, 727, 922
ApoI	RAATTY	1 cut(s)	748
ArsI	GACNNNNNNTTYG	2 cut(s)	609, 641
AspLEI	GCGC	2 cut(s)	560, 1122
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	5 cut(s)	227, 329, 370, 678, 827
AsuII	TTCGAA	1 cut(s)	840
AsuNHI	GCTAGC	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	120
BarI	GAAGNNNNNNTAC	2 cut(s)	990, 1022
BbsI	GAAGAC	1 cut(s)	950
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	3 cut(s)	507, 714, 934
BceAI	ACGGC	1 cut(s)	1128
BcgI	CGANNNNNNTGC	6 cut(s)	430, 464, 734, 768, 1111, 1145
BciT130I	CCWGG	3 cut(s)	63, 995, 1049
BciVI	GTATCC	1 cut(s)	1087
BcnI	CCSGG	1 cut(s)	315
BcuI	ACTAGT	1 cut(s)	866
BfaI	CTAG	3 cut(s)	26, 867, 1002
BfmI	CTRYAG	1 cut(s)	637
BfuAI	ACCTGC	1 cut(s)	246
BfuI	GTATCC	1 cut(s)	1087
BisI	GCNGC	5 cut(s)	521, 728, 804, 923, 1101
BlsI	GCNGC	5 cut(s)	522, 729, 805, 924, 1102
Bme1390I	CCNGG	4 cut(s)	63, 315, 995, 1049
BmeT110I	CYCGRG	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	1136
BmrFI	CCNGG	4 cut(s)	63, 315, 995, 1049
BmsI	GCATC	3 cut(s)	177, 507, 897
BmtI	GCTAGC	1 cut(s)	29
BoxI	GACNNNNGTC	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	950
BpmI	CTGGAG	1 cut(s)	592
Bpu14I	TTCGAA	1 cut(s)	840
BpuMI	CCSGG	1 cut(s)	315
BsaBI	GATNNNNATC	2 cut(s)	193, 1032
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	798, 993
BsaXI	ACNNNNNCTCC	2 cut(s)	590, 620
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 546, 1090
Bse1I	ACTGG	4 cut(s)	17, 103, 155, 609
Bse8I	GATNNNNATC	2 cut(s)	193, 1032
BseBI	CCWGG	3 cut(s)	63, 995, 1049
BseDI	CCNNGG	2 cut(s)	798, 993
BseGI	GGATG	2 cut(s)	852, 888
BseJI	GATNNNNATC	2 cut(s)	193, 1032
BseLI	CCNNNNNNNGG	3 cut(s)	198, 546, 1090
BseMII	CTCAG	4 cut(s)	238, 694, 729, 1049
BseNI	ACTGG	4 cut(s)	17, 103, 155, 609
BseX3I	CGGCCG	1 cut(s)	1101
BseXI	GCAGC	3 cut(s)	507, 714, 934
BsgI	GTGCAG	2 cut(s)	491, 651
Bsh1236I	CGCG	6 cut(s)	70, 93, 106, 162, 199, 791
Bsh1285I	CGRYCG	2 cut(s)	939, 1104
BshFI	GGCC	2 cut(s)	803, 1103
BsiEI	CGRYCG	2 cut(s)	939, 1104
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	207, 315
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	3 cut(s)	198, 546, 1090
BsmFI	GGGAC	1 cut(s)	505
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	2 cut(s)	803, 1103
BsoBI	CYCGRG	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	840
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp19I	CCATGG	1 cut(s)	798
Bsp68I	TCGCGA	1 cut(s)	162
BspACI	CCGC	8 cut(s)	70, 199, 620, 732, 789, 804, 886, 1100
BspANI	GGCC	2 cut(s)	803, 1103
BspCNI	CTCAG	4 cut(s)	237, 693, 730, 1050
BspFNI	CGCG	6 cut(s)	70, 93, 106, 162, 199, 791
BspLI	GGNNCC	1 cut(s)	1136
BspMI	ACCTGC	1 cut(s)	246
BspOI	GCTAGC	1 cut(s)	29
BspPI	GGATC	6 cut(s)	73, 80, 143, 146, 183, 209
BspT104I	TTCGAA	1 cut(s)	840
BsrI	ACTGG	4 cut(s)	17, 103, 155, 609
BssECI	CCNNGG	2 cut(s)	798, 993
BssNI	GRCGYC	1 cut(s)	494
BssT1I	CCWWGG	1 cut(s)	798
Bst2UI	CCWGG	3 cut(s)	63, 995, 1049
Bst4CI	ACNGT	4 cut(s)	638, 760, 811, 905
BstACI	GRCGYC	1 cut(s)	494
BstBI	TTCGAA	1 cut(s)	840
BstC8I	GCNNGC	3 cut(s)	27, 732, 927
BstDEI	CTNAG	4 cut(s)	224, 680, 738, 1058
BstDSI	CCRYGG	1 cut(s)	798
BstF5I	GGATG	2 cut(s)	852, 888
BstFNI	CGCG	6 cut(s)	70, 93, 106, 162, 199, 791
BstHHI	GCGC	2 cut(s)	560, 1122
BstMCI	CGRYCG	2 cut(s)	939, 1104
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 998, 1070
BstNI	CCWGG	3 cut(s)	63, 995, 1049
BstNSI	RCATGY	1 cut(s)	703
BstPAI	GACNNNNGTC	1 cut(s)	17
BstSCI	CCNGG	4 cut(s)	61, 313, 993, 1047
BstSFI	CTRYAG	1 cut(s)	637
BstUI	CGCG	6 cut(s)	70, 93, 106, 162, 199, 791
BstV1I	GCAGC	3 cut(s)	507, 714, 934
BstV2I	GAAGAC	1 cut(s)	950
BstX2I	RGATCY	1 cut(s)	201
BstXI	CCANNNNNNTGG	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	201
BstZI	CGGCCG	1 cut(s)	1101
BsuI	GTATCC	1 cut(s)	1087
BsuRI	GGCC	2 cut(s)	803, 1103
BtgI	CCRYGG	1 cut(s)	798
BtrI	CACGTC	1 cut(s)	485
BtsCI	GGATG	2 cut(s)	852, 888
BtsIMutI	CAGTG	2 cut(s)	60, 910
BtuMI	TCGCGA	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	246
Cac8I	GCNNGC	3 cut(s)	27, 732, 927
CfoI	GCGC	2 cut(s)	560, 1122
CseI	GACGC	2 cut(s)	370, 502
Csp6I	GTAC	4 cut(s)	83, 102, 864, 1007
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	6 cut(s)	9, 32, 260, 700, 799, 1160
CviQI	GTAC	4 cut(s)	83, 102, 864, 1007
DdeI	CTNAG	4 cut(s)	224, 680, 738, 1058
EaeI	YGGCCR	2 cut(s)	801, 1101
EagI	CGGCCG	1 cut(s)	1101
EclXI	CGGCCG	1 cut(s)	1101
Eco130I	CCWWGG	1 cut(s)	798
Eco52I	CGGCCG	1 cut(s)	1101
Eco88I	CYCGRG	1 cut(s)	120
EcoRI	GAATTC	1 cut(s)	748
EcoRII	CCWGG	3 cut(s)	61, 993, 1047
EcoT14I	CCWWGG	1 cut(s)	798
EcoT22I	ATGCAT	1 cut(s)	1165
ErhI	CCWWGG	1 cut(s)	798
FaeI	CATG	6 cut(s)	12, 35, 263, 703, 802, 1163
FalI	AAGNNNNNCTT	2 cut(s)	391, 423
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	6 cut(s)	8, 31, 259, 699, 798, 1159
FauI	CCCGC	2 cut(s)	739, 796
Fnu4HI	GCNGC	5 cut(s)	521, 728, 804, 923, 1101
FokI	GGATG	2 cut(s)	839, 875
Fsp4HI	GCNGC	5 cut(s)	521, 728, 804, 923, 1101
FspBI	CTAG	3 cut(s)	26, 867, 1002
FspI	TGCGCA	1 cut(s)	1121
GlaI	GCGC	2 cut(s)	559, 1121
GluI	GCNGC	5 cut(s)	521, 728, 804, 923, 1101
GsuI	CTGGAG	1 cut(s)	592
HaeIII	GGCC	2 cut(s)	803, 1103
HapII	CCGG	2 cut(s)	207, 315
HgaI	GACGC	2 cut(s)	370, 502
HhaI	GCGC	2 cut(s)	560, 1122
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	6 cut(s)	12, 35, 263, 703, 802, 1163
Hin6I	GCGC	2 cut(s)	558, 1120
HinP1I	GCGC	2 cut(s)	558, 1120
HincII	GTYRAC	2 cut(s)	586, 1078
HindII	GTYRAC	2 cut(s)	586, 1078
HinfI	GANTC	5 cut(s)	108, 144, 353, 664, 882
HpaI	GTTAAC	2 cut(s)	586, 1078
HpaII	CCGG	2 cut(s)	207, 315
HphI	GGTGA	5 cut(s)	227, 329, 370, 678, 827
Hpy166II	GTNNAC	6 cut(s)	462, 580, 586, 686, 1009, 1078
Hpy188I	TCNGA	6 cut(s)	130, 135, 414, 652, 918, 1059
Hpy188III	TCNNGA	4 cut(s)	161, 532, 940, 962
Hpy8I	GTNNAC	6 cut(s)	462, 580, 586, 686, 1009, 1078
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	1 cut(s)	854
HpyCH4III	ACNGT	4 cut(s)	638, 760, 811, 905
HpyCH4IV	ACGT	3 cut(s)	484, 582, 955
HpyCH4V	TGCA	5 cut(s)	35, 508, 523, 632, 1163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 998, 1070
HpyF3I	CTNAG	4 cut(s)	224, 680, 738, 1058
HpySE526I	ACGT	3 cut(s)	484, 582, 955
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	6 cut(s)	12, 35, 263, 703, 802, 1163
HspAI	GCGC	2 cut(s)	558, 1120
KspAI	GTTAAC	2 cut(s)	586, 1078
LmnI	GCTCC	2 cut(s)	790, 1051
Lsp1109I	GCAGC	3 cut(s)	507, 714, 934
LweI	GCATC	3 cut(s)	177, 507, 897
MaeI	CTAG	3 cut(s)	26, 867, 1002
MaeII	ACGT	3 cut(s)	484, 582, 955
MaeIII	GTNAC	7 cut(s)	57, 227, 358, 436, 480, 611, 905
MboII	GAAGA	5 cut(s)	487, 520, 665, 729, 950
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	1 cut(s)	748
MlyI	GAGTC	2 cut(s)	347, 876
MnlI	CCTC	7 cut(s)	435, 616, 733, 766, 857, 936, 1120
Mph1103I	ATGCAT	1 cut(s)	1165
MseI	TTAA	3 cut(s)	585, 1068, 1077
MslI	CAYNNNNRTG	2 cut(s)	627, 1115
MspA1I	CMGCKG	2 cut(s)	727, 925
MspI	CCGG	2 cut(s)	207, 315
MspR9I	CCNGG	4 cut(s)	63, 315, 995, 1049
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	3 cut(s)	63, 995, 1049
MvnI	CGCG	6 cut(s)	70, 93, 106, 162, 199, 791
MwoI	GCNNNNNNNGC	3 cut(s)	216, 998, 1070
NciI	CCSGG	1 cut(s)	315
NcoI	CCATGG	1 cut(s)	798
NheI	GCTAGC	1 cut(s)	25
NlaIII	CATG	6 cut(s)	12, 35, 263, 703, 802, 1163
NlaIV	GGNNCC	1 cut(s)	1136
NmuCI	GTSAC	4 cut(s)	358, 436, 480, 905
NruI	TCGCGA	1 cut(s)	162
NsbI	TGCGCA	1 cut(s)	1121
NsiI	ATGCAT	1 cut(s)	1165
NspI	RCATGY	1 cut(s)	703
NspV	TTCGAA	1 cut(s)	840
OliI	CACNNNNGTG	1 cut(s)	627
PaeR7I	CTCGAG	1 cut(s)	120
PaqCI	CACCTGC	1 cut(s)	246
PciI	ACATGT	1 cut(s)	699
PctI	GAATGC	1 cut(s)	994
PfeI	GAWTC	3 cut(s)	108, 144, 664
PkrI	GCNGC	5 cut(s)	522, 729, 805, 924, 1102
Ple19I	CGATCG	1 cut(s)	939
PleI	GAGTC	2 cut(s)	347, 876
PpsI	GAGTC	2 cut(s)	347, 876
PscI	ACATGT	1 cut(s)	699
PshAI	GACNNNNGTC	1 cut(s)	17
PsiI	TTATAA	1 cut(s)	245
Psp6I	CCWGG	3 cut(s)	61, 993, 1047
PspGI	CCWGG	3 cut(s)	61, 993, 1047
PspN4I	GGNNCC	1 cut(s)	1136
PspXI	VCTCGAGB	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	939
PvuII	CAGCTG	2 cut(s)	727, 925
RruI	TCGCGA	1 cut(s)	162
RsaI	GTAC	4 cut(s)	84, 103, 865, 1008
RsaNI	GTAC	4 cut(s)	83, 102, 864, 1007
RseI	CAYNNNNRTG	2 cut(s)	627, 1115
SaqAI	TTAA	3 cut(s)	585, 1068, 1077
SatI	GCNGC	5 cut(s)	521, 728, 804, 923, 1101
SchI	GAGTC	2 cut(s)	347, 876
ScrFI	CCNGG	4 cut(s)	63, 315, 995, 1049
SduI	GDGCHC	1 cut(s)	453
SfaNI	GCATC	3 cut(s)	177, 507, 897
SfcI	CTRYAG	1 cut(s)	637
Sfr274I	CTCGAG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	840
SlaI	CTCGAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	2 cut(s)	627, 1115
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
SpeI	ACTAGT	1 cut(s)	866
Sse9I	AATT	1 cut(s)	748
SsiI	CCGC	8 cut(s)	70, 199, 620, 732, 789, 804, 886, 1100
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	3 cut(s)	26, 867, 1002
StyD4I	CCNGG	4 cut(s)	61, 313, 993, 1047
StyI	CCWWGG	1 cut(s)	798
TaaI	ACNGT	4 cut(s)	638, 760, 811, 905
TaiI	ACGT	3 cut(s)	487, 585, 958
TaqI	TCGA	5 cut(s)	121, 351, 704, 840, 935
TasI	AATT	1 cut(s)	748
TauI	GCSGC	2 cut(s)	806, 1103
TfiI	GAWTC	3 cut(s)	108, 144, 664
Tru1I	TTAA	3 cut(s)	585, 1068, 1077
Tru9I	TTAA	3 cut(s)	585, 1068, 1077
TscAI	CASTG	2 cut(s)	60, 910
TseFI	GTSAC	4 cut(s)	358, 436, 480, 905
TseI	GCWGC	3 cut(s)	520, 727, 922
Tsp45I	GTSAC	4 cut(s)	358, 436, 480, 905
TspDTI	ATGAA	3 cut(s)	294, 891, 995
TspGWI	ACGGA	4 cut(s)	100, 181, 380, 962
TspRI	CASTG	2 cut(s)	60, 910
XapI	RAATTY	1 cut(s)	748
XceI	RCATGY	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	3 cut(s)	26, 867, 1002
Zsp2I	ATGCAT	1 cut(s)	1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.