Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008382.1

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Forward (+)

8632 .. 9024

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008382.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgcctgtctttctcaagaagaagtgtaaaatcctaaacttcctaaagcataggacctccagctacaagccgcatgaaagtgatgcttgtcgtggtcttttcaaggaagaagtgtctatgaactctgatctagactcgcagatagacaagatcgcccatagcgccgctggcgacactactgaccctgatgagttcgatcctctccccatccccgagggtgctagtgttgaggagcagctcaacatcttgaagatcaacagcgctaaatataagaagcagctggccagttctatcgcgaaaacagagcagcgtctgcgggatttggaccaacgcattgaccaaaatgctccagaagctagagagcgcgcaatcacaaaagattttctcgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.76

Weight (kDa)

5.95

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	296, 366
AciI	CCGC	3 cut(s)	71, 165, 316
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	282
AfeI	AGCGCT	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	103, 250
AluBI	AGCT	4 cut(s)	63, 238, 280, 356
AluI	AGCT	4 cut(s)	63, 238, 280, 356
AlwI	GGATC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	313
Ama87I	CYCGRG	2 cut(s)	212, 386
Aor51HI	AGCGCT	1 cut(s)	262
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	3 cut(s)	235, 277, 307
AspLEI	GCGC	4 cut(s)	164, 263, 366, 368
AspS9I	GGNCC	2 cut(s)	54, 325
AvaI	CYCGRG	2 cut(s)	212, 386
AvaII	GGWCC	2 cut(s)	54, 325
BalI	TGGCCA	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	247, 289, 319
BccI	CCATC	1 cut(s)	215
BfaI	CTAG	3 cut(s)	131, 222, 357
BfoI	RGCGCY	2 cut(s)	165, 264
BisI	GCNGC	5 cut(s)	71, 165, 236, 278, 308
BlsI	GCNGC	5 cut(s)	72, 166, 237, 279, 309
Bme18I	GGWCC	2 cut(s)	54, 325
BmeT110I	CYCGRG	2 cut(s)	212, 386
BmgT120I	GGNCC	2 cut(s)	54, 325
BmsI	GCATC	1 cut(s)	73
BpmI	CTGGAG	2 cut(s)	43, 333
BsaJI	CCNNGG	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	285
BsePI	GCGCGC	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	247, 289, 319
Bsh1236I	CGCG	2 cut(s)	296, 366
BshFI	GGCC	1 cut(s)	284
BsiHKCI	CYCGRG	2 cut(s)	212, 386
BsnI	GGCC	1 cut(s)	284
BsoBI	CYCGRG	2 cut(s)	212, 386
Bsp143I	GATC	4 cut(s)	127, 150, 196, 252
Bsp68I	TCGCGA	1 cut(s)	296
BspACI	CCGC	3 cut(s)	71, 165, 316
BspANI	GGCC	1 cut(s)	284
BspFNI	CGCG	2 cut(s)	296, 366
BspPI	GGATC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	213
BssHII	GCGCGC	1 cut(s)	364
BssMI	GATC	4 cut(s)	127, 150, 196, 252
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstC8I	GCNNGC	3 cut(s)	169, 282, 366
BstF5I	GGATG	1 cut(s)	207
BstFNI	CGCG	2 cut(s)	296, 366
BstH2I	RGCGCY	2 cut(s)	165, 264
BstHHI	GCGC	4 cut(s)	164, 263, 366, 368
BstKTI	GATC	4 cut(s)	130, 153, 199, 255
BstMBI	GATC	4 cut(s)	127, 150, 196, 252
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 168, 313, 353
BstUI	CGCG	2 cut(s)	296, 366
BstV1I	GCAGC	3 cut(s)	247, 289, 319
BsuRI	GGCC	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	207
BtuMI	TCGCGA	1 cut(s)	296
Cac8I	GCNNGC	3 cut(s)	169, 282, 366
CaiI	CAGNNNCTG	1 cut(s)	313
CfoI	GCGC	4 cut(s)	164, 263, 366, 368
Cfr13I	GGNCC	2 cut(s)	54, 325
CseI	GACGC	1 cut(s)	299
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	6 cut(s)	63, 70, 238, 280, 284, 356
CviKI_1	RGCY	6 cut(s)	63, 70, 238, 280, 284, 356
DpnI	GATC	4 cut(s)	129, 152, 198, 254
DpnII	GATC	4 cut(s)	127, 150, 196, 252
EaeI	YGGCCR	1 cut(s)	282
Eco47I	GGWCC	2 cut(s)	54, 325
Eco47III	AGCGCT	1 cut(s)	262
Eco88I	CYCGRG	2 cut(s)	212, 386
EcoO109I	RGGNCCY	1 cut(s)	54
FaeI	CATG	1 cut(s)	77
FaiI	YATR	5 cut(s)	51, 75, 119, 159, 270
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	1 cut(s)	73
FauI	CCCGC	1 cut(s)	309
Fnu4HI	GCNGC	5 cut(s)	71, 165, 236, 278, 308
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	5 cut(s)	71, 165, 236, 278, 308
FspBI	CTAG	3 cut(s)	131, 222, 357
GlaI	GCGC	4 cut(s)	163, 262, 365, 367
GluI	GCNGC	5 cut(s)	71, 165, 236, 278, 308
GsuI	CTGGAG	2 cut(s)	43, 333
HaeII	RGCGCY	2 cut(s)	165, 264
HaeIII	GGCC	1 cut(s)	284
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	4 cut(s)	164, 263, 366, 368
Hin1II	CATG	1 cut(s)	77
Hin6I	GCGC	4 cut(s)	162, 261, 364, 366
HinP1I	GCGC	4 cut(s)	162, 261, 364, 366
HinfI	GANTC	1 cut(s)	134
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	6 cut(s)	16, 131, 247, 295, 350, 386
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 168, 313, 353
Hsp92II	CATG	1 cut(s)	77
HspAI	GCGC	4 cut(s)	162, 261, 364, 366
Kzo9I	GATC	4 cut(s)	127, 150, 196, 252
LmnI	GCTCC	2 cut(s)	232, 352
LpnPI	CCDG	7 cut(s)	18, 73, 153, 198, 266, 298, 363
Lsp1109I	GCAGC	3 cut(s)	247, 289, 319
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	3 cut(s)	131, 222, 357
MalI	GATC	4 cut(s)	129, 152, 198, 254
MboI	GATC	4 cut(s)	127, 150, 196, 252
MboII	GAAGA	3 cut(s)	31, 119, 262
MlsI	TGGCCA	1 cut(s)	284
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	4 cut(s)	67, 208, 210, 223
Mox20I	TGGCCA	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	2 cut(s)	167, 280
MvnI	CGCG	2 cut(s)	296, 366
MwoI	GCNNNNNNNGC	4 cut(s)	161, 168, 313, 353
NdeII	GATC	4 cut(s)	127, 150, 196, 252
NlaIII	CATG	1 cut(s)	77
NruI	TCGCGA	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	386
PauI	GCGCGC	1 cut(s)	364
PkrI	GCNGC	5 cut(s)	72, 166, 237, 279, 309
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PpuMI	RGGWCCY	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	54, 325
PspPPI	RGGWCCY	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	313
PteI	GCGCGC	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	280
RruI	TCGCGA	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	78
SatI	GCNGC	5 cut(s)	71, 165, 236, 278, 308
Sau3AI	GATC	4 cut(s)	127, 150, 196, 252
Sau96I	GGNCC	2 cut(s)	54, 325
SchI	GAGTC	1 cut(s)	128
SetI	ASST	5 cut(s)	59, 65, 240, 282, 358
SfaNI	GCATC	1 cut(s)	73
Sfr274I	CTCGAG	1 cut(s)	386
SinI	GGWCC	2 cut(s)	54, 325
SlaI	CTCGAG	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	2 cut(s)	14, 386
SmoI	CTYRAG	2 cut(s)	14, 386
SsiI	CCGC	3 cut(s)	71, 165, 316
SspMI	CTAG	3 cut(s)	131, 222, 357
TaqI	TCGA	2 cut(s)	195, 387
TauI	GCSGC	2 cut(s)	73, 167
TseI	GCWGC	3 cut(s)	235, 277, 307
TspDTI	ATGAA	2 cut(s)	90, 134
VpaK11BI	GGWCC	2 cut(s)	54, 325
XbaI	TCTAGA	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XhoI	CTCGAG	1 cut(s)	386
XspI	CTAG	3 cut(s)	131, 222, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.