Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Forward (+)

17550263 .. 17550752

Gene Structure 490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012332

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTCAACTGAGCAAGGAGGAAGTCAGCCGCCCGCTACTGAGGGTGAGAATTCTGCTACTAGCGAGGTGGTCAATGCCTTCGCTGCCACAGTAGCCGTTGCGGTCAGCGAAACAACTGAAGCCGACGAGTTCACGCCCCTCGTCATCCCAGAGGGTGCTAGCATCGATGAACGACTCCGCATCCTTACGGTCAATAGAGACAATTATAGGAGGCACCTAGCTACGTCGATCTCGAAGACTGCGCAGCGACTTCGCCACTTCGATCAACAAACGAGCGAGAATGCCCAGAAGGCTAAGGAGCATGCACAAAATCTTGCCAATGAAGCTAGGATTCACGCAGATAAGATCGCTAACATAAATCTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.28

Weight (kDa)

5.31

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	213
AciI	CCGC	4 cut(s)	29, 33, 101, 178
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	138
AluBI	AGCT	2 cut(s)	221, 326
AluI	AGCT	2 cut(s)	221, 326
Alw26I	GTCTC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	83, 244
ApoI	RAATTY	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	56
AsuNHI	GCTAGC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	70, 256
BceAI	ACGGC	1 cut(s)	80
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	4 cut(s)	60, 159, 218, 327
BglI	GCCNNNNNGGC	1 cut(s)	290
BisI	GCNGC	3 cut(s)	29, 84, 245
BlsI	GCNGC	3 cut(s)	30, 85, 246
BmiI	GGNNCC	1 cut(s)	215
BmsI	GCATC	2 cut(s)	171, 189
BmtI	GCTAGC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	294
Bsa29I	ATCGAT	1 cut(s)	165
BseCI	ATCGAT	1 cut(s)	165
BseGI	GGATG	2 cut(s)	144, 180
BseMII	CTCAG	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	70, 256
BshNI	GGYRCC	1 cut(s)	213
BshVI	ATCGAT	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	286
Bsp143I	GATC	3 cut(s)	228, 262, 345
BspACI	CCGC	4 cut(s)	29, 33, 101, 178
BspCNI	CTCAG	1 cut(s)	31
BspDI	ATCGAT	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	215
BspOI	GCTAGC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	213
BssMI	GATC	3 cut(s)	228, 262, 345
Bst4CI	ACNGT	2 cut(s)	91, 190
BstC8I	GCNNGC	3 cut(s)	33, 160, 303
BstDEI	CTNAG	3 cut(s)	9, 39, 294
BstF5I	GGATG	2 cut(s)	144, 180
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	3 cut(s)	231, 265, 348
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	3 cut(s)	228, 262, 345
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 92, 290, 323
BstNSI	RCATGY	1 cut(s)	305
BstV1I	GCAGC	2 cut(s)	70, 256
BstV2I	GAAGAC	1 cut(s)	242
Bsu15I	ATCGAT	1 cut(s)	165
BsuTUI	ATCGAT	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	144, 180
Cac8I	GCNNGC	3 cut(s)	33, 160, 303
CfoI	GCGC	1 cut(s)	244
ClaI	ATCGAT	1 cut(s)	165
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	6 cut(s)	28, 95, 122, 221, 293, 326
CviKI_1	RGCY	6 cut(s)	28, 95, 122, 221, 293, 326
DdeI	CTNAG	3 cut(s)	9, 39, 294
DpnI	GATC	3 cut(s)	230, 264, 347
DpnII	GATC	3 cut(s)	228, 262, 345
Eco57I	CTGAAG	1 cut(s)	138
EcoRI	GAATTC	1 cut(s)	49
FaeI	CATG	1 cut(s)	305
FaiI	YATR	4 cut(s)	207, 303, 356, 367
FatI	CATG	1 cut(s)	301
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	29, 84, 245
FokI	GGATG	2 cut(s)	131, 167
Fsp4HI	GCNGC	3 cut(s)	29, 84, 245
FspBI	CTAG	4 cut(s)	60, 159, 218, 327
FspI	TGCGCA	1 cut(s)	243
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	3 cut(s)	29, 84, 245
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	305
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	174, 331
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	6, 132
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	2 cut(s)	6, 132
Hpy99I	CGWCG	2 cut(s)	128, 229
HpyAV	CCTTC	2 cut(s)	88, 283
HpyCH4III	ACNGT	2 cut(s)	91, 190
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 92, 290, 323
HpyF3I	CTNAG	3 cut(s)	9, 39, 294
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	305
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	3 cut(s)	228, 262, 345
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	2 cut(s)	162, 299
Lsp1109I	GCAGC	2 cut(s)	70, 256
LweI	GCATC	2 cut(s)	171, 189
MaeI	CTAG	4 cut(s)	60, 159, 218, 327
MaeII	ACGT	1 cut(s)	224
MalI	GATC	3 cut(s)	230, 264, 347
MboI	GATC	3 cut(s)	228, 262, 345
MboII	GAAGA	1 cut(s)	247
MluCI	AATT	2 cut(s)	49, 202
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	6 cut(s)	11, 34, 58, 145, 149, 204
Mva1269I	GAATGC	1 cut(s)	286
MwoI	GCNNNNNNNGC	4 cut(s)	83, 92, 290, 323
NdeII	GATC	3 cut(s)	228, 262, 345
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	1 cut(s)	215
NsbI	TGCGCA	1 cut(s)	243
NspI	RCATGY	1 cut(s)	305
PaeI	GCATGC	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	230
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	30, 85, 246
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	215
SatI	GCNGC	3 cut(s)	29, 84, 245
Sau3AI	GATC	3 cut(s)	228, 262, 345
SchI	GAGTC	1 cut(s)	168
SetI	ASST	5 cut(s)	69, 219, 223, 227, 328
SfaNI	GCATC	2 cut(s)	171, 189
SphI	GCATGC	1 cut(s)	305
Sse9I	AATT	2 cut(s)	49, 202
SsiI	CCGC	4 cut(s)	29, 33, 101, 178
SspMI	CTAG	4 cut(s)	60, 159, 218, 327
TaaI	ACNGT	2 cut(s)	91, 190
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	4 cut(s)	165, 227, 233, 261
TasI	AATT	2 cut(s)	49, 202
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	331
TseI	GCWGC	2 cut(s)	83, 244
TspDTI	ATGAA	2 cut(s)	183, 336
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	1 cut(s)	305
XspI	CTAG	4 cut(s)	60, 159, 218, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.