Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005003.1

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Reverse (-)

8248 .. 8712

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005003.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgtcgacagagcagggaggaaatcagccatctattactgagggtgagaagtcggcgcaagagtcgacgaatgatgtagtcaaggcccctgcgactaccgaaactacttccattggtgataccattgaagttgacgagttcgagctactcgtcattccaccatatgctagcctggacgagaggcttcgcatccttatagagcacagcgaaaactatgggaagcatctgacagcttcgattgcgaaaacggaacaacaaattcgtgagctggatcagcgtttgatccgtattgccgaagagggtaaaacaaatgcacaaagtcttgccaaaacggctataatgcatgtggacaatgctgctaaggcaaaccgcgctcaataccaagatctcttgggtgctgttaacacagctaatacccagagcaaggaaaccgcgacatcgatagccactttgctgaaagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.77

Weight (kDa)

4.83

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	5, 65
AccII	CGCG	2 cut(s)	372, 434
AciI	CCGC	2 cut(s)	370, 432
AclWI	GGATC	2 cut(s)	277, 279
AcsI	RAATTY	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	4 cut(s)	145, 233, 268, 410
AluI	AGCT	4 cut(s)	145, 233, 268, 410
Alw21I	GWGCWC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	277, 279
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	58, 374
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	2 cut(s)	56, 128
AsuNHI	GCTAGC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	348
BciT130I	CCWGG	1 cut(s)	173
BfaI	CTAG	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	332
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	198, 232
BmtI	GCTAGC	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	360
Bsa29I	ATCGAT	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	173
BseCI	ATCGAT	1 cut(s)	440
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	343
Bsh1236I	CGCG	2 cut(s)	372, 434
BshFI	GGCC	1 cut(s)	86
BshVI	ATCGAT	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	424
BsnI	GGCC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	271, 282, 385
BspACI	CCGC	2 cut(s)	370, 432
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	31
BspDI	ATCGAT	1 cut(s)	440
BspFNI	CGCG	2 cut(s)	372, 434
BspLI	GGNNCC	1 cut(s)	87
BspOI	GCTAGC	1 cut(s)	171
BspPI	GGATC	2 cut(s)	277, 279
BssMI	GATC	3 cut(s)	271, 282, 385
Bst2UI	CCWGG	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	39, 360
BstF5I	GGATG	1 cut(s)	189
BstFNI	CGCG	2 cut(s)	372, 434
BstHHI	GCGC	2 cut(s)	58, 374
BstKTI	GATC	3 cut(s)	274, 285, 388
BstMBI	GATC	3 cut(s)	271, 282, 385
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 274, 332, 362, 371
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	171
BstUI	CGCG	2 cut(s)	372, 434
BstV1I	GCAGC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
Bsu15I	ATCGAT	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	86
BsuTUI	ATCGAT	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	169
CfoI	GCGC	2 cut(s)	58, 374
Cfr13I	GGNCC	1 cut(s)	85
ClaI	ATCGAT	1 cut(s)	440
CviAII	CATG	1 cut(s)	344
DdeI	CTNAG	2 cut(s)	39, 360
DpnI	GATC	3 cut(s)	273, 284, 387
DpnII	GATC	3 cut(s)	271, 282, 385
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	345
FaeI	CATG	1 cut(s)	347
FaiI	YATR	6 cut(s)	163, 165, 197, 216, 338, 345
FatI	CATG	1 cut(s)	343
FauNDI	CATATG	1 cut(s)	163
FblI	GTMKAC	2 cut(s)	5, 65
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	2 cut(s)	57, 373
GluI	GCNGC	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	86
HhaI	GCGC	2 cut(s)	58, 374
Hin1II	CATG	1 cut(s)	347
Hin6I	GCGC	2 cut(s)	56, 372
HinP1I	GCGC	2 cut(s)	56, 372
HincII	GTYRAC	4 cut(s)	6, 66, 133, 403
HindII	GTYRAC	4 cut(s)	6, 66, 133, 403
HinfI	GANTC	1 cut(s)	62
HpaI	GTTAAC	1 cut(s)	403
HphI	GGTGA	2 cut(s)	56, 128
Hpy166II	GTNNAC	5 cut(s)	6, 66, 133, 349, 403
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	5 cut(s)	6, 66, 133, 349, 403
Hpy99I	CGWCG	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	314, 343
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 274, 332, 362, 371
HpyF3I	CTNAG	2 cut(s)	39, 360
Hsp92II	CATG	1 cut(s)	347
HspAI	GCGC	2 cut(s)	56, 372
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	271, 282, 385
LpnPI	CCDG	5 cut(s)	102, 158, 185, 254, 431
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	2 cut(s)	198, 232
MaeI	CTAG	1 cut(s)	168
MalI	GATC	3 cut(s)	273, 284, 387
MboI	GATC	3 cut(s)	271, 282, 385
MboII	GAAGA	1 cut(s)	308
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	4 cut(s)	11, 34, 174, 292
Mph1103I	ATGCAT	1 cut(s)	345
MseI	TTAA	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	2 cut(s)	372, 434
MwoI	GCNNNNNNNGC	5 cut(s)	239, 274, 332, 362, 371
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	3 cut(s)	271, 282, 385
NheI	GCTAGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	1 cut(s)	87
NsiI	ATGCAT	1 cut(s)	345
NspI	RCATGY	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	385
SalI	GTCGAC	2 cut(s)	4, 64
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	3 cut(s)	271, 282, 385
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	4 cut(s)	147, 235, 270, 412
SfaNI	GCATC	2 cut(s)	198, 232
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	2 cut(s)	370, 432
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	171
TaqI	TCGA	5 cut(s)	5, 65, 141, 236, 440
TasI	AATT	1 cut(s)	258
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseI	GCWGC	1 cut(s)	356
TspGWI	ACGGA	2 cut(s)	263, 275
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	1 cut(s)	347
XmiI	GTMKAC	2 cut(s)	5, 65
XspI	CTAG	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.