Rmu_sc0005044.1_g000023

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005044.1
OG0004849
Physical Location & Seq
Reverse (-)
110773 .. 112480
1708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005044.1_g000023.1.cds

Sequence Viewer

Length: 552 bp
atgagcgtacacgaacctcatcttgtaccggtaccccttggtgactccggtgatgagattctcgacgtgcgagagggcggtcctgatggcggcgctggtcttgcgagtgccgaaccaggcctcgatcttgagcttgcgctggccggtctcctcgtccttgatgagctggaaatcaaggttgaggtgcttgaagttgcggacgagcttgccgcgcgggccttccacctcgatgatcttcgcgtggaccttgatcttcaccccgtcgggaatgtccatggtctccgacgaaagaatggtcttcatgatgcctcggtacctacaatcaatcaagctactggcgttgcaggaattgagacaaccgacactcttaagaaaatccggtctgatgtaattttacgtccaacaggaaaacagcagggaagggtctactttgggcagcatcttgtttggagagactctgttgcaggaggtgtgaagggaaatgtcgtgaaggttggagatcttgtttatgtcctcaagatggtctcttctgctgatgaagcagcagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

183

Amino Acids

19.33

Weight (kDa)

4.88

Isoelectric Point (pI)

31.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 31, 313
AccB1I GGYRCC 2 cut(s) 31, 313
AccI GTMKAC 1 cut(s) 426
AccII CGCG 3 cut(s) 212, 214, 240
AciI CCGC 5 cut(s) 78, 90, 197, 210, 214
AcoI YGGCCR 1 cut(s) 141
AfaI GTAC 4 cut(s) 9, 27, 33, 315
AfiI CCNNNNNNNGG 2 cut(s) 89, 520
AflII CTTAAG 1 cut(s) 368
AgeI ACCGGT 1 cut(s) 28
AgsI TTSAA 1 cut(s) 191
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 5 cut(s) 133, 166, 205, 332, 548
AluI AGCT 5 cut(s) 133, 166, 205, 332, 548
Alw26I GTCTC 5 cut(s) 152, 284, 347, 447, 529
AoxI GGCC 3 cut(s) 118, 141, 216
ApeKI GCWGC 3 cut(s) 436, 542, 545
ArsI GACNNNNNNTTYG 2 cut(s) 280, 312
AsiGI ACCGGT 1 cut(s) 28
Asp718I GGTACC 2 cut(s) 31, 313
AspLEI GCGC 3 cut(s) 95, 139, 214
AspS9I GGNCC 3 cut(s) 80, 216, 244
AsuHPI GGTGA 3 cut(s) 53, 62, 248
AvaII GGWCC 2 cut(s) 80, 244
BanI GGYRCC 2 cut(s) 31, 313
BbsI GAAGAC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 448
BccI CCATC 2 cut(s) 80, 514
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 5 cut(s) 152, 284, 347, 447, 529
BfoI RGCGCY 1 cut(s) 96
BfrI CTTAAG 1 cut(s) 368
BglI GCCNNNNNGGC 1 cut(s) 215
BglII AGATCT 1 cut(s) 499
BisI GCNGC 5 cut(s) 91, 210, 437, 543, 546
BlsI GCNGC 5 cut(s) 92, 211, 438, 544, 547
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 80, 244
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 3 cut(s) 80, 216, 244
BmiI GGNNCC 2 cut(s) 33, 315
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 2 cut(s) 295, 448
BpiI GAAGAC 1 cut(s) 290
BpuEI CTTGAG 2 cut(s) 149, 500
BsaI GGTCTC 3 cut(s) 152, 284, 529
BsaJI CCNNGG 3 cut(s) 37, 274, 309
BsaWI WCCGGW 3 cut(s) 28, 47, 378
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 520
Bse118I RCCGGY 2 cut(s) 28, 143
Bse1I ACTGG 1 cut(s) 340
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 37, 274, 309
BseLI CCNNNNNNNGG 2 cut(s) 89, 520
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 448
Bsh1236I CGCG 3 cut(s) 212, 214, 240
BshFI GGCC 3 cut(s) 120, 143, 218
BshNI GGYRCC 2 cut(s) 31, 313
BshTI ACCGGT 1 cut(s) 28
BsiSI CCGG 4 cut(s) 29, 48, 144, 379
BslI CCNNNNNNNGG 2 cut(s) 89, 520
BsmAI GTCTC 5 cut(s) 152, 284, 347, 447, 529
BsnI GGCC 3 cut(s) 120, 143, 218
Bso31I GGTCTC 3 cut(s) 152, 284, 529
Bsp143I GATC 4 cut(s) 124, 232, 250, 499
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 5 cut(s) 78, 90, 197, 210, 214
BspANI GGCC 3 cut(s) 120, 143, 218
BspFNI CGCG 3 cut(s) 212, 214, 240
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 33, 315
BspT107I GGYRCC 2 cut(s) 31, 313
BspTI CTTAAG 1 cut(s) 368
BspTNI GGTCTC 3 cut(s) 152, 284, 529
BsrFI RCCGGY 2 cut(s) 28, 143
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 2 cut(s) 28, 143
BssECI CCNNGG 3 cut(s) 37, 274, 309
BssMI GATC 4 cut(s) 124, 232, 250, 499
BssT1I CCWWGG 2 cut(s) 37, 274
Bst2UI CCWGG 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 532
BstAFI CTTAAG 1 cut(s) 368
BstC8I GCNNGC 4 cut(s) 135, 141, 207, 216
BstDSI CCRYGG 1 cut(s) 274
BstFNI CGCG 3 cut(s) 212, 214, 240
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 3 cut(s) 95, 139, 214
BstKTI GATC 4 cut(s) 127, 235, 253, 502
BstMAI GTCTC 5 cut(s) 152, 284, 347, 447, 529
BstMBI GATC 4 cut(s) 124, 232, 250, 499
BstMWI GCNNNNNNNGC 4 cut(s) 101, 211, 215, 539
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstUI CGCG 3 cut(s) 212, 214, 240
BstV1I GCAGC 1 cut(s) 448
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
BsuRI GGCC 3 cut(s) 120, 143, 218
BtgI CCRYGG 1 cut(s) 274
BtrI CACGTC 1 cut(s) 67
Cac8I GCNNGC 4 cut(s) 135, 141, 207, 216
CciI TCATGA 1 cut(s) 301
CfoI GCGC 3 cut(s) 95, 139, 214
Cfr10I RCCGGY 2 cut(s) 28, 143
Cfr13I GGNCC 3 cut(s) 80, 216, 244
Csp6I GTAC 4 cut(s) 8, 26, 32, 314
CspAI ACCGGT 1 cut(s) 28
CviAII CATG 2 cut(s) 275, 302
CviJI RGCY 8 cut(s) 120, 133, 143, 166, 205, 218, 332, 548
CviKI_1 RGCY 8 cut(s) 120, 133, 143, 166, 205, 218, 332, 548
CviQI GTAC 4 cut(s) 8, 26, 32, 314
DpnI GATC 4 cut(s) 126, 234, 252, 501
DpnII GATC 4 cut(s) 124, 232, 250, 499
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 532
Eco130I CCWWGG 2 cut(s) 37, 274
Eco147I AGGCCT 1 cut(s) 120
Eco31I GGTCTC 3 cut(s) 152, 284, 529
Eco47I GGWCC 2 cut(s) 80, 244
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 2 cut(s) 37, 274
ErhI CCWWGG 2 cut(s) 37, 274
FaeI CATG 2 cut(s) 278, 305
FaiI YATR 3 cut(s) 276, 303, 510
FatI CATG 2 cut(s) 274, 301
FauI CCCGC 1 cut(s) 207
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 5 cut(s) 91, 210, 437, 543, 546
Fsp4HI GCNGC 5 cut(s) 91, 210, 437, 543, 546
GlaI GCGC 3 cut(s) 94, 138, 213
GluI GCNGC 5 cut(s) 91, 210, 437, 543, 546
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 3 cut(s) 120, 143, 218
HapII CCGG 4 cut(s) 29, 48, 144, 379
HhaI GCGC 3 cut(s) 95, 139, 214
Hin1II CATG 2 cut(s) 278, 305
Hin6I GCGC 3 cut(s) 93, 137, 212
HinP1I GCGC 3 cut(s) 93, 137, 212
HinfI GANTC 3 cut(s) 44, 58, 455
HpaII CCGG 4 cut(s) 29, 48, 144, 379
HphI GGTGA 3 cut(s) 53, 62, 248
Hpy166II GTNNAC 3 cut(s) 10, 244, 427
Hpy188I TCNGA 2 cut(s) 284, 385
Hpy188III TCNNGA 7 cut(s) 62, 83, 128, 265, 302, 487, 517
Hpy8I GTNNAC 3 cut(s) 10, 244, 427
Hpy99I CGWCG 3 cut(s) 68, 266, 288
HpyAV CCTTC 4 cut(s) 229, 414, 469, 484
HpyCH4IV ACGT 2 cut(s) 66, 397
HpyCH4V TGCA 2 cut(s) 344, 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 211, 215, 539
HpySE526I ACGT 2 cut(s) 66, 397
Hsp92II CATG 2 cut(s) 278, 305
HspAI GCGC 3 cut(s) 93, 137, 212
KpnI GGTACC 2 cut(s) 35, 317
Kzo9I GATC 4 cut(s) 124, 232, 250, 499
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 2 cut(s) 295, 448
MaeII ACGT 2 cut(s) 66, 397
MaeIII GTNAC 1 cut(s) 41
MalI GATC 4 cut(s) 126, 234, 252, 501
MboI GATC 4 cut(s) 124, 232, 250, 499
MboII GAAGA 4 cut(s) 227, 245, 290, 519
MflI RGATCY 1 cut(s) 499
MluCI AATT 2 cut(s) 348, 390
MlyI GAGTC 2 cut(s) 38, 449
MmeI TCCRAC 3 cut(s) 307, 425, 475
MnlI CCTC 9 cut(s) 27, 67, 131, 161, 175, 236, 319, 461, 524
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 228
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 4 cut(s) 29, 48, 144, 379
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 3 cut(s) 212, 214, 240
MwoI GCNNNNNNNGC 4 cut(s) 101, 211, 215, 539
NcoI CCATGG 1 cut(s) 274
NdeII GATC 4 cut(s) 124, 232, 250, 499
NlaIII CATG 2 cut(s) 278, 305
NlaIV GGNNCC 2 cut(s) 33, 315
NmuCI GTSAC 1 cut(s) 41
PagI TCATGA 1 cut(s) 301
PceI AGGCCT 1 cut(s) 120
PfeI GAWTC 1 cut(s) 58
PinAI ACCGGT 1 cut(s) 28
PkrI GCNGC 5 cut(s) 92, 211, 438, 544, 547
PleI GAGTC 2 cut(s) 38, 449
PpsI GAGTC 2 cut(s) 38, 449
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 33, 315
PspPI GGNCC 3 cut(s) 80, 216, 244
PsuI RGATCY 1 cut(s) 499
RsaI GTAC 4 cut(s) 9, 27, 33, 315
RsaNI GTAC 4 cut(s) 8, 26, 32, 314
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 5 cut(s) 91, 210, 437, 543, 546
Sau3AI GATC 4 cut(s) 124, 232, 250, 499
Sau96I GGNCC 3 cut(s) 80, 216, 244
SchI GAGTC 2 cut(s) 38, 449
ScrFI CCNGG 1 cut(s) 117
SfaNI GCATC 2 cut(s) 295, 448
SinI GGWCC 2 cut(s) 80, 244
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 3 cut(s) 128, 368, 515
SmoI CTYRAG 3 cut(s) 128, 368, 515
Sse9I AATT 2 cut(s) 348, 390
SseBI AGGCCT 1 cut(s) 120
SsiI CCGC 5 cut(s) 78, 90, 197, 210, 214
StuI AGGCCT 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 2 cut(s) 37, 274
TaiI ACGT 2 cut(s) 69, 400
TaqI TCGA 3 cut(s) 63, 123, 228
TasI AATT 2 cut(s) 348, 390
TauI GCSGC 2 cut(s) 93, 212
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 3 cut(s) 436, 542, 545
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 290, 552
Vha464I CTTAAG 1 cut(s) 368
VpaK11BI GGWCC 2 cut(s) 80, 244
XmiI GTMKAC 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.