Rh3CG113700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0004849
Physical Location & Seq
Forward (+)
9114279 .. 9118246
3968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG113700.1

Sequence Viewer

Length: 534 bp
ATGGCTCAGGGCGGTGCGGATGGTGGCGCTAATCTTGCCGGTGCCAAACTAAGCCTCCATCTTGAGATTCTTCTTGCTGGTGGACTCCTCAGTGACGAGTTCGAAGTCGAGATTGAGGTGCTTGGAGTTTATGTTGAACTTTCACTGTGGACCTTCGACTTCTATCACCTTGGCTTTCTCCTTGATGGTGACGTCGTCCGGGATGTCCCTGGTCCCTTAGGACATAACCAGAGCCGCCATCCTCACTTCCCTGAGCCGCGTTCGCACTTTTGCATCAGCTTTTCCTCCTTGCTGCTGCTGGTGTTCCTCTACTTCTCCGACTTCCTCCTCTTCGCCGCCAACCATCGTAGCGTCTGCAACTCCTTCCTCTTCCTCCACTCATCCTCCGTCTCTGTCAGAAGCGAGGACACCCTCATCAGCCCCGAGTACGACGCCTCCTTCGCTGCCGCTGGAGCCGCCGAGTCGTCGTTCTCTTCCCTACAAAACGGCATAGTCAACGCAATCAAGGAAGATCGGAATAGCTTGCTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.28

Weight (kDa)

4.74

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 41
AccII CGCG 1 cut(s) 259
AciI CCGC 7 cut(s) 12, 17, 235, 257, 336, 447, 456
AcyI GRCGYC 2 cut(s) 192, 432
AfaI GTAC 1 cut(s) 428
AgsI TTSAA 1 cut(s) 137
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 2 cut(s) 279, 522
AluI AGCT 2 cut(s) 279, 522
Alw26I GTCTC 1 cut(s) 394
Ama87I CYCGRG 1 cut(s) 422
ApeKI GCWGC 3 cut(s) 292, 295, 443
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 150, 212
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 158, 200
AsuII TTCGAA 1 cut(s) 102
AvaI CYCGRG 1 cut(s) 422
AvaII GGWCC 2 cut(s) 150, 212
AxyI CCTNAGG 1 cut(s) 217
BanI GGYRCC 1 cut(s) 41
BbvI GCAGC 3 cut(s) 279, 282, 430
BccI CCATC 5 cut(s) 14, 66, 179, 246, 351
BceAI ACGGC 1 cut(s) 502
BciT130I CCWGG 1 cut(s) 210
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 394
BfaI CTAG 1 cut(s) 532
BfoI RGCGCY 1 cut(s) 30
BisI GCNGC 8 cut(s) 235, 257, 293, 296, 336, 444, 447, 456
BlsI GCNGC 8 cut(s) 236, 258, 294, 297, 337, 445, 448, 457
Bme1390I CCNGG 2 cut(s) 200, 210
Bme18I GGWCC 2 cut(s) 150, 212
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 2 cut(s) 150, 212
BmiI GGNNCC 3 cut(s) 43, 214, 454
BmrFI CCNGG 2 cut(s) 200, 210
BmsI GCATC 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 471
Bpu10I CCTNAGC 2 cut(s) 6, 252
Bpu14I TTCGAA 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 200
BsaHI GRCGYC 2 cut(s) 192, 432
BsaJI CCNNGG 2 cut(s) 169, 208
BsaXI ACNNNNNCTCC 8 cut(s) 39, 69, 117, 147, 368, 398, 419, 449
Bse118I RCCGGY 1 cut(s) 38
Bse21I CCTNAGG 1 cut(s) 217
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 169, 208
BseGI GGATG 4 cut(s) 25, 208, 238, 380
BseMII CTCAG 3 cut(s) 20, 103, 243
BseRI GAGGAG 2 cut(s) 77, 317
BseXI GCAGC 3 cut(s) 279, 282, 430
Bsh1236I CGCG 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 2 cut(s) 39, 199
BslFI GGGAC 2 cut(s) 191, 198
BsmAI GTCTC 1 cut(s) 394
BsmBI CGTCTC 1 cut(s) 394
BsmFI GGGAC 2 cut(s) 191, 198
BsoBI CYCGRG 1 cut(s) 422
Bsp119I TTCGAA 1 cut(s) 102
Bsp143I GATC 1 cut(s) 511
BspACI CCGC 7 cut(s) 12, 17, 235, 257, 336, 447, 456
BspCNI CTCAG 3 cut(s) 19, 102, 244
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 3 cut(s) 43, 214, 454
BspT104I TTCGAA 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 169, 208
BssMI GATC 1 cut(s) 511
BssNI GRCGYC 2 cut(s) 192, 432
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 147
Bst6I CTCTTC 3 cut(s) 335, 374, 478
BstACI GRCGYC 2 cut(s) 192, 432
BstBI TTCGAA 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 524
BstDEI CTNAG 5 cut(s) 6, 50, 89, 217, 252
BstF5I GGATG 4 cut(s) 25, 208, 238, 380
BstFNI CGCG 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 1 cut(s) 514
BstMAI GTCTC 1 cut(s) 394
BstMBI GATC 1 cut(s) 511
BstMWI GCNNNNNNNGC 5 cut(s) 35, 262, 440, 452, 455
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 2 cut(s) 198, 208
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 3 cut(s) 279, 282, 430
Bsu36I CCTNAGG 1 cut(s) 217
BtsCI GGATG 4 cut(s) 25, 208, 238, 380
BtsIMutI CAGTG 2 cut(s) 97, 143
Cac8I GCNNGC 1 cut(s) 524
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 150, 212
CseI GACGC 2 cut(s) 340, 440
Csp6I GTAC 1 cut(s) 427
CviJI RGCY 9 cut(s) 5, 54, 174, 234, 256, 279, 420, 455, 522
CviKI_1 RGCY 9 cut(s) 5, 54, 174, 234, 256, 279, 420, 455, 522
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 5 cut(s) 6, 50, 89, 217, 252
DpnI GATC 1 cut(s) 513
DpnII GATC 1 cut(s) 511
Eam1104I CTCTTC 3 cut(s) 335, 374, 478
EarI CTCTTC 3 cut(s) 335, 374, 478
Eco130I CCWWGG 1 cut(s) 169
Eco47I GGWCC 2 cut(s) 150, 212
Eco81I CCTNAGG 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 169
Esp3I CGTCTC 1 cut(s) 394
FaiI YATR 3 cut(s) 132, 225, 491
FaqI GGGAC 2 cut(s) 191, 198
Fnu4HI GCNGC 8 cut(s) 235, 257, 293, 296, 336, 444, 447, 456
FokI GGATG 4 cut(s) 32, 215, 225, 367
Fsp4HI GCNGC 8 cut(s) 235, 257, 293, 296, 336, 444, 447, 456
FspBI CTAG 1 cut(s) 532
GlaI GCGC 1 cut(s) 28
GluI GCNGC 8 cut(s) 235, 257, 293, 296, 336, 444, 447, 456
GsuI CTGGAG 1 cut(s) 471
HaeII RGCGCY 1 cut(s) 30
HapII CCGG 2 cut(s) 39, 199
HgaI GACGC 2 cut(s) 340, 440
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 2 cut(s) 192, 432
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 3 cut(s) 67, 84, 461
HpaII CCGG 2 cut(s) 39, 199
HphI GGTGA 2 cut(s) 158, 200
Hpy166II GTNNAC 3 cut(s) 83, 150, 496
Hpy188I TCNGA 3 cut(s) 319, 398, 516
Hpy188III TCNNGA 2 cut(s) 62, 109
Hpy8I GTNNAC 3 cut(s) 83, 150, 496
Hpy99I CGWCG 3 cut(s) 197, 434, 469
HpyAV CCTTC 3 cut(s) 163, 373, 448
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 2 cut(s) 273, 357
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 262, 440, 452, 455
HpyF3I CTNAG 5 cut(s) 6, 50, 89, 217, 252
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 2 cut(s) 192, 432
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 511
LmnI GCTCC 1 cut(s) 452
LpnPI CCDG 9 cut(s) 52, 63, 195, 212, 222, 242, 264, 284, 435
Lsp1109I GCAGC 3 cut(s) 279, 282, 430
LweI GCATC 1 cut(s) 282
MaeI CTAG 1 cut(s) 532
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 92, 188
MalI GATC 1 cut(s) 513
MboI GATC 1 cut(s) 511
MboII GAAGA 5 cut(s) 62, 322, 361, 465, 521
MlyI GAGTC 2 cut(s) 78, 470
MmeI TCCRAC 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 2 cut(s) 39, 199
MspR9I CCNGG 2 cut(s) 200, 210
MvaI CCWGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 5 cut(s) 35, 262, 440, 452, 455
NciI CCSGG 1 cut(s) 200
NdeII GATC 1 cut(s) 511
NlaIV GGNNCC 3 cut(s) 43, 214, 454
NmeAIII GCCGAG 1 cut(s) 484
NmuCI GTSAC 2 cut(s) 92, 188
NspV TTCGAA 1 cut(s) 102
PfeI GAWTC 1 cut(s) 67
PflFI GACNNNGTC 1 cut(s) 194
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 8 cut(s) 236, 258, 294, 297, 337, 445, 448, 457
PleI GAGTC 2 cut(s) 78, 469
PpsI GAGTC 2 cut(s) 78, 469
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 3 cut(s) 43, 214, 454
PspPI GGNCC 2 cut(s) 150, 212
PsyI GACNNNGTC 1 cut(s) 194
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SatI GCNGC 8 cut(s) 235, 257, 293, 296, 336, 444, 447, 456
Sau3AI GATC 1 cut(s) 511
Sau96I GGNCC 2 cut(s) 150, 212
SchI GAGTC 2 cut(s) 78, 470
ScrFI CCNGG 2 cut(s) 200, 210
SetI ASST 6 cut(s) 120, 155, 171, 195, 281, 524
SfaNI GCATC 1 cut(s) 282
SfuI TTCGAA 1 cut(s) 102
SinI GGWCC 2 cut(s) 150, 212
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SsiI CCGC 7 cut(s) 12, 17, 235, 257, 336, 447, 456
SspMI CTAG 1 cut(s) 532
StyD4I CCNGG 2 cut(s) 198, 208
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 147
TaiI ACGT 1 cut(s) 195
TaqI TCGA 3 cut(s) 102, 108, 156
TauI GCSGC 5 cut(s) 237, 259, 338, 449, 458
TfiI GAWTC 1 cut(s) 67
TscAI CASTG 2 cut(s) 97, 150
TseFI GTSAC 2 cut(s) 92, 188
TseI GCWGC 3 cut(s) 292, 295, 443
Tsp45I GTSAC 2 cut(s) 92, 188
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 2 cut(s) 97, 150
Tth111I GACNNNGTC 1 cut(s) 194
VpaK11BI GGWCC 2 cut(s) 150, 212
XspI CTAG 1 cut(s) 532
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.