Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Forward (+)

16040806 .. 16041606

Gene Structure 801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCCCGAGTGCCTACTCAAGTGGATTTGCAGCACGGCAAGTTTGACGCCATCAACACAAAACAAGAAAGCTTCTTGGAAAGTCAAGAAGTGGAGCACAAAGATGCTGTTACCAAAATTGAATTGCCTATAAGAGGCGATCAATCTAAAGGCAAAAACCTTCCTCTCGACCAACTCGTCGCAGAAGAAGAAAGTAGCCTGCCCATTGTTGAATCACGGCCTTACATAGAGGCTTTTTATGGAGAAGATGGTCCACAAGATTGTTCTTCGACAAGAAAGTTGTCTCTCGAACATCAAGTTCATGATCAATTTAATTGTGATTTTGCTACTGGACGTCATGTTGATCAAAAGCATGATCAAAATGATCAAGAGCGTGCTCAAGGTGACACGCTCAATTATCAATCAAGGTGGCAGCCGATGGCCGGACGTCATCATGATCATGCAAAAGGTCAAGAGCATGGTCCACTCAATTGCCAATTAAGGTATGACCCATTTGTTTATCAATTTAACATTGGCTATGGCACCGGACGTCGCGGTGGAAAAGATCAAAGTCATGGCCAACTTAATTATCAATTAAGTTATGGTCTTGGAAAGCCAACATGTGGCTTTATTGATCAATTTAAGCTGGGGTTCCTCATCGTGCTTCAAGGCCAAACGGTGGCTTTGATATATGTGGAGGATACATTGGCAGCCCATCTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

26.45

Weight (kDa)

5.59

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AatII	GACGTC	3 cut(s)	337, 430, 532
AccB1I	GGYRCC	1 cut(s)	521
AccB7I	CCANNNNNTGG	2 cut(s)	602, 658
AccII	CGCG	1 cut(s)	534
AciI	CCGC	1 cut(s)	534
AcoI	YGGCCR	2 cut(s)	420, 556
AcyI	GRCGYC	4 cut(s)	48, 334, 427, 529
AfiI	CCNNNNNNNGG	4 cut(s)	134, 422, 602, 658
AflIII	ACRYGT	1 cut(s)	599
AgsI	TTSAA	3 cut(s)	122, 212, 647
AluBI	AGCT	2 cut(s)	72, 625
AluI	AGCT	2 cut(s)	72, 625
Alw21I	GWGCWC	2 cut(s)	99, 379
Alw26I	GTCTC	1 cut(s)	288
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	5 cut(s)	3, 218, 420, 556, 649
ApeKI	GCWGC	3 cut(s)	31, 412, 689
AspS9I	GGNCC	3 cut(s)	4, 251, 461
AsuHPI	GGTGA	1 cut(s)	395
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	2 cut(s)	251, 461
BalI	TGGCCA	1 cut(s)	558
BanI	GGYRCC	1 cut(s)	521
Bbv12I	GWGCWC	2 cut(s)	99, 379
BbvI	GCAGC	3 cut(s)	43, 424, 701
BccI	CCATC	4 cut(s)	59, 242, 412, 702
BceAI	ACGGC	2 cut(s)	52, 233
BciVI	GTATCC	1 cut(s)	673
BclI	TGATCA	6 cut(s)	304, 343, 355, 364, 436, 613
BcoDI	GTCTC	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	673
BisI	GCNGC	3 cut(s)	32, 413, 690
BlsI	GCNGC	3 cut(s)	33, 414, 691
Bme18I	GGWCC	2 cut(s)	251, 461
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	3 cut(s)	4, 251, 461
BmiI	GGNNCC	2 cut(s)	523, 632
BmsI	GCATC	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	363
BsaHI	GRCGYC	4 cut(s)	48, 334, 427, 529
BsaWI	WCCGGW	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 422, 602, 658
Bse1I	ACTGG	1 cut(s)	334
BseLI	CCNNNNNNNGG	4 cut(s)	134, 422, 602, 658
BseNI	ACTGG	1 cut(s)	334
BseXI	GCAGC	3 cut(s)	43, 424, 701
BseYI	CCCAGC	1 cut(s)	625
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	5 cut(s)	5, 220, 422, 558, 651
BshNI	GGYRCC	1 cut(s)	521
BsiHKAI	GWGCWC	2 cut(s)	99, 379
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	2 cut(s)	423, 525
BslI	CCNNNNNNNGG	4 cut(s)	134, 422, 602, 658
BsmAI	GTCTC	1 cut(s)	288
BsnI	GGCC	5 cut(s)	5, 220, 422, 558, 651
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	99, 379
Bsp143I	GATC	8 cut(s)	139, 304, 343, 355, 364, 436, 544, 613
BspACI	CCGC	1 cut(s)	534
BspANI	GGCC	5 cut(s)	5, 220, 422, 558, 651
BspFNI	CGCG	1 cut(s)	534
BspHI	TCATGA	2 cut(s)	301, 433
BspLI	GGNNCC	2 cut(s)	523, 632
BspT107I	GGYRCC	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	334
BssMI	GATC	8 cut(s)	139, 304, 343, 355, 364, 436, 544, 613
BssNI	GRCGYC	4 cut(s)	48, 334, 427, 529
Bst4CI	ACNGT	1 cut(s)	658
BstACI	GRCGYC	4 cut(s)	48, 334, 427, 529
BstC8I	GCNNGC	2 cut(s)	200, 375
BstENI	CCTNNNNNAGG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	534
BstKTI	GATC	8 cut(s)	142, 307, 346, 358, 367, 439, 547, 616
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	8 cut(s)	139, 304, 343, 355, 364, 436, 544, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstNSI	RCATGY	1 cut(s)	603
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	3 cut(s)	43, 424, 701
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	5 cut(s)	5, 220, 422, 558, 651
Cac8I	GCNNGC	2 cut(s)	200, 375
CciI	TCATGA	2 cut(s)	301, 433
Cfr13I	GGNCC	3 cut(s)	4, 251, 461
CseI	GACGC	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	389, 424
CviAII	CATG	9 cut(s)	302, 338, 353, 434, 440, 458, 554, 600, 702
DpnI	GATC	8 cut(s)	141, 306, 345, 357, 366, 438, 546, 615
DpnII	GATC	8 cut(s)	139, 304, 343, 355, 364, 436, 544, 613
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
EaeI	YGGCCR	2 cut(s)	420, 556
Eco47I	GGWCC	2 cut(s)	251, 461
Eco88I	CYCGRG	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	132
FaeI	CATG	9 cut(s)	305, 341, 356, 437, 443, 461, 557, 603, 705
FatI	CATG	9 cut(s)	301, 337, 352, 433, 439, 457, 553, 599, 701
FbaI	TGATCA	6 cut(s)	304, 343, 355, 364, 436, 613
Fnu4HI	GCNGC	3 cut(s)	32, 413, 690
Fsp4HI	GCNGC	3 cut(s)	32, 413, 690
GluI	GCNGC	3 cut(s)	32, 413, 690
GsaI	CCCAGC	1 cut(s)	629
HaeIII	GGCC	5 cut(s)	5, 220, 422, 558, 651
HapII	CCGG	2 cut(s)	423, 525
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	4 cut(s)	48, 334, 427, 529
Hin1II	CATG	9 cut(s)	305, 341, 356, 437, 443, 461, 557, 603, 705
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	2 cut(s)	423, 525
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	2 cut(s)	254, 464
Hpy188III	TCNNGA	7 cut(s)	86, 167, 287, 302, 368, 434, 452
Hpy8I	GTNNAC	2 cut(s)	254, 464
Hpy99I	CGWCG	2 cut(s)	182, 534
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4IV	ACGT	3 cut(s)	334, 427, 529
HpyCH4V	TGCA	3 cut(s)	31, 443, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpySE526I	ACGT	3 cut(s)	334, 427, 529
Hsp92I	GRCGYC	4 cut(s)	48, 334, 427, 529
Hsp92II	CATG	9 cut(s)	305, 341, 356, 437, 443, 461, 557, 603, 705
Ksp22I	TGATCA	6 cut(s)	304, 343, 355, 364, 436, 613
Kzo9I	GATC	8 cut(s)	139, 304, 343, 355, 364, 436, 544, 613
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	5 cut(s)	212, 315, 436, 538, 611
Lsp1109I	GCAGC	3 cut(s)	43, 424, 701
LweI	GCATC	1 cut(s)	94
MaeII	ACGT	3 cut(s)	334, 427, 529
MaeIII	GTNAC	2 cut(s)	109, 383
MalI	GATC	8 cut(s)	141, 306, 345, 357, 366, 438, 546, 615
MboI	GATC	8 cut(s)	139, 304, 343, 355, 364, 436, 544, 613
MboII	GAAGA	4 cut(s)	197, 200, 257, 258
MfeI	CAATTG	1 cut(s)	469
MhlI	GDGCHC	2 cut(s)	99, 379
MlsI	TGGCCA	1 cut(s)	558
MluNI	TGGCCA	1 cut(s)	558
MnlI	CCTC	5 cut(s)	128, 174, 223, 644, 670
Mox20I	TGGCCA	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	558
MseI	TTAA	6 cut(s)	312, 479, 507, 564, 575, 621
MslI	CAYNNNNRTG	2 cut(s)	102, 438
Msp20I	TGGCCA	1 cut(s)	558
MspI	CCGG	2 cut(s)	423, 525
MunI	CAATTG	1 cut(s)	469
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	1 cut(s)	698
NdeII	GATC	8 cut(s)	139, 304, 343, 355, 364, 436, 544, 613
NlaIII	CATG	9 cut(s)	305, 341, 356, 437, 443, 461, 557, 603, 705
NlaIV	GGNNCC	2 cut(s)	523, 632
NmuCI	GTSAC	1 cut(s)	383
NspI	RCATGY	1 cut(s)	603
PagI	TCATGA	2 cut(s)	301, 433
PciI	ACATGT	1 cut(s)	599
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	212
PflMI	CCANNNNNTGG	2 cut(s)	602, 658
PkrI	GCNGC	3 cut(s)	33, 414, 691
PscI	ACATGT	1 cut(s)	599
PspFI	CCCAGC	1 cut(s)	625
PspN4I	GGNNCC	2 cut(s)	523, 632
PspPI	GGNCC	3 cut(s)	4, 251, 461
RseI	CAYNNNNRTG	2 cut(s)	102, 438
SaqAI	TTAA	6 cut(s)	312, 479, 507, 564, 575, 621
SatI	GCNGC	3 cut(s)	32, 413, 690
Sau3AI	GATC	8 cut(s)	139, 304, 343, 355, 364, 436, 544, 613
Sau96I	GGNCC	3 cut(s)	4, 251, 461
SduI	GDGCHC	2 cut(s)	99, 379
SfaNI	GCATC	1 cut(s)	94
SinI	GGWCC	2 cut(s)	251, 461
SmiMI	CAYNNNNRTG	2 cut(s)	102, 438
SmlI	CTYRAG	2 cut(s)	18, 378
SmoI	CTYRAG	2 cut(s)	18, 378
SsiI	CCGC	1 cut(s)	534
TaaI	ACNGT	1 cut(s)	658
TaiI	ACGT	3 cut(s)	337, 430, 532
TaqI	TCGA	3 cut(s)	168, 269, 288
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	6 cut(s)	312, 479, 507, 564, 575, 621
Tru9I	TTAA	6 cut(s)	312, 479, 507, 564, 575, 621
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	3 cut(s)	31, 412, 689
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	290
Van91I	CCANNNNNTGG	2 cut(s)	602, 658
VpaK11BI	GGWCC	2 cut(s)	251, 461
XagI	CCTNNNNNAGG	1 cut(s)	132
XceI	RCATGY	1 cut(s)	603
ZraI	GACGTC	3 cut(s)	335, 428, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.