Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Reverse (-)

76424025 .. 76424390

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021565

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCCGCCGAGTAATACTAGCCAATCTCCGCCGTTGATTCCGAAGACGATGGCGAGGATCAGCATCTCCATTACCGCCATTGCCCTCTACCTCACCATCTTCGTCCTCCTCCACCTCCTCCGTTACCTGGGTCGACCTGTCCCTCTCGGATCTATCCTTGCCCTCCGCTCCCTCCTCATGACCCTCCTATCCTTCACCATCTTCGTCGGCATCAACCTCTTCCGCTGGTTCTTGCGGCGCTCCAAAACCCATGAAATTGATGGTGAGATTCAAATAGATTGGGATAGAGAAATGAGAGGGGAATCAAGGAAAACAAGATCGGAGGAAATTGAAAAGAGTGATGGATTTGGAAGGGAAAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009922 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0032870 GO:0033993 GO:0034625 GO:0034626 GO:0042175 GO:0042221 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0050896 GO:0051716 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0072330 GO:0097305 GO:0097306 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

122

Amino Acids

13.92

Weight (kDa)

10.09

Isoelectric Point (pI)

69.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	6 cut(s)	5, 29, 75, 166, 223, 235
AclWI	GGATC	2 cut(s)	65, 157
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	272, 332
AjnI	CCWGG	1 cut(s)	126
AlwI	GGATC	2 cut(s)	65, 157
AspLEI	GCGC	1 cut(s)	240
AsuHPI	GGTGA	3 cut(s)	85, 187, 275
BbsI	GAAGAC	1 cut(s)	50
BccI	CCATC	5 cut(s)	43, 104, 206, 254, 335
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	128
BfaI	CTAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	2 cut(s)	5, 236
BlsI	GCNGC	2 cut(s)	6, 237
Bme1390I	CCNGG	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	72, 219
BpiI	GAAGAC	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	78
BseRI	GAGGAG	3 cut(s)	98, 107, 164
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	57, 149, 317
BspACI	CCGC	6 cut(s)	5, 29, 75, 166, 223, 235
BspHI	TCATGA	1 cut(s)	177
BspPI	GGATC	2 cut(s)	65, 157
BsrBI	CCGCTC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	3 cut(s)	57, 149, 317
Bst2UI	CCWGG	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	3 cut(s)	60, 152, 320
BstMBI	GATC	3 cut(s)	57, 149, 317
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	1 cut(s)	240
CviAII	CATG	2 cut(s)	178, 251
CviJI	RGCY	1 cut(s)	21
CviKI_1	RGCY	1 cut(s)	21
DpnI	GATC	3 cut(s)	59, 151, 319
DpnII	GATC	3 cut(s)	57, 149, 317
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
EciI	GGCGGA	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	181, 254
FaiI	YATR	2 cut(s)	179, 252
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	2 cut(s)	177, 250
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	5, 236
Fsp4HI	GCNGC	2 cut(s)	5, 236
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	2 cut(s)	5, 236
HaeII	RGCGCY	1 cut(s)	241
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	181, 254
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	134
HindII	GTYRAC	1 cut(s)	134
HinfI	GANTC	3 cut(s)	37, 268, 302
HphI	GGTGA	3 cut(s)	85, 187, 275
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	3 cut(s)	42, 149, 322
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	134
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	202, 345
Hsp92II	CATG	2 cut(s)	181, 254
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	57, 149, 317
LmnI	GCTCC	2 cut(s)	173, 245
LpnPI	CCDG	4 cut(s)	113, 140, 150, 211
LweI	GCATC	2 cut(s)	72, 219
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	3 cut(s)	59, 151, 319
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	3 cut(s)	57, 149, 317
MboII	GAAGA	4 cut(s)	55, 91, 193, 211
MflI	RGATCY	1 cut(s)	149
MluCI	AATT	3 cut(s)	255, 327, 361
MspA1I	CMGCKG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
NdeII	GATC	3 cut(s)	57, 149, 317
NlaIII	CATG	2 cut(s)	181, 254
NmeAIII	GCCGAG	1 cut(s)	33
PagI	TCATGA	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	37, 268, 302
PkrI	GCNGC	2 cut(s)	6, 237
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	149
SalI	GTCGAC	1 cut(s)	132
SatI	GCNGC	2 cut(s)	5, 236
Sau3AI	GATC	3 cut(s)	57, 149, 317
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	5 cut(s)	93, 117, 129, 139, 219
SfaNI	GCATC	2 cut(s)	72, 219
Sse9I	AATT	3 cut(s)	255, 327, 361
SsiI	CCGC	6 cut(s)	5, 29, 75, 166, 223, 235
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	126
TaqI	TCGA	1 cut(s)	133
TasI	AATT	3 cut(s)	255, 327, 361
TauI	GCSGC	2 cut(s)	7, 238
TfiI	GAWTC	3 cut(s)	37, 268, 302
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	133
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.