Rh3AG107900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0004849
Physical Location & Seq
Forward (+)
9114279 .. 9115766
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG107900.1

Sequence Viewer

Length: 360 bp
ATGGCTCAGGGCGGTGCGGATGGTGGCGCTAATCTTGCCGGTGCCAAACTAAGCCTCCATCTTGAGATTCTTCTTGCTGGTGGACTCCTCAGTGACGAGTTCGAAGTCGAGATTGAGGTGCTTGGAGTTTATGTTGAACTTTCACTGTGGACCTTCGACTTCTATCACCTTGGCTTTCTCCTTGATGGTGACGTCGTCCGGGATGTCCCTGGTCCCTTAGGACATAACCAGAGCCGCCATCCTCACTTCCCTGAGCCGCGTTCGCACTTTTGCATCAGGCAGCGTCTCCTTCAGACCACACAAGAACAAAATTATTATGAACATCGCACAAACAACAGGTCAATGTTAACACATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.38

Weight (kDa)

5.49

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 41
AccII CGCG 1 cut(s) 259
AciI CCGC 4 cut(s) 12, 17, 235, 257
AcuI CTGAAG 1 cut(s) 275
AcyI GRCGYC 1 cut(s) 192
AgsI TTSAA 1 cut(s) 137
AjnI CCWGG 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 280
ArsI GACNNNNNNTTYG 2 cut(s) 323, 355
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 150, 212
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 158, 200
AsuII TTCGAA 1 cut(s) 102
AvaII GGWCC 2 cut(s) 150, 212
AxyI CCTNAGG 1 cut(s) 217
BanI GGYRCC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 292
BccI CCATC 4 cut(s) 14, 66, 179, 246
BciT130I CCWGG 1 cut(s) 210
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 290
BfoI RGCGCY 1 cut(s) 30
BisI GCNGC 3 cut(s) 235, 257, 281
BlsI GCNGC 3 cut(s) 236, 258, 282
Bme1390I CCNGG 2 cut(s) 200, 210
Bme18I GGWCC 2 cut(s) 150, 212
BmgT120I GGNCC 2 cut(s) 150, 212
BmiI GGNNCC 2 cut(s) 43, 214
BmrFI CCNGG 2 cut(s) 200, 210
BmsI GCATC 1 cut(s) 282
Bpu10I CCTNAGC 2 cut(s) 6, 252
Bpu14I TTCGAA 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 169, 208
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 117, 147
Bse118I RCCGGY 1 cut(s) 38
Bse21I CCTNAGG 1 cut(s) 217
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 169, 208
BseGI GGATG 3 cut(s) 25, 208, 238
BseMII CTCAG 3 cut(s) 20, 103, 243
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 41
BsiSI CCGG 2 cut(s) 39, 199
BslFI GGGAC 2 cut(s) 191, 198
BsmAI GTCTC 1 cut(s) 290
BsmBI CGTCTC 1 cut(s) 290
BsmFI GGGAC 2 cut(s) 191, 198
Bsp119I TTCGAA 1 cut(s) 102
BspACI CCGC 4 cut(s) 12, 17, 235, 257
BspCNI CTCAG 3 cut(s) 19, 102, 244
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 43, 214
BspT104I TTCGAA 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 169, 208
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 147
BstACI GRCGYC 1 cut(s) 192
BstBI TTCGAA 1 cut(s) 102
BstDEI CTNAG 5 cut(s) 6, 50, 89, 217, 252
BstF5I GGATG 3 cut(s) 25, 208, 238
BstFNI CGCG 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstMAI GTCTC 1 cut(s) 290
BstMWI GCNNNNNNNGC 2 cut(s) 35, 262
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 2 cut(s) 198, 208
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 292
Bsu36I CCTNAGG 1 cut(s) 217
BtgZI GCGATG 1 cut(s) 308
BtsCI GGATG 3 cut(s) 25, 208, 238
BtsIMutI CAGTG 2 cut(s) 97, 143
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 150, 212
CseI GACGC 1 cut(s) 272
CviAII CATG 2 cut(s) 353, 357
CviJI RGCY 5 cut(s) 5, 54, 174, 234, 256
CviKI_1 RGCY 5 cut(s) 5, 54, 174, 234, 256
DdeI CTNAG 5 cut(s) 6, 50, 89, 217, 252
Eco130I CCWWGG 1 cut(s) 169
Eco47I GGWCC 2 cut(s) 150, 212
Eco57I CTGAAG 1 cut(s) 275
Eco81I CCTNAGG 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 169
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 2 cut(s) 356, 360
FaiI YATR 5 cut(s) 132, 225, 318, 354, 358
FaqI GGGAC 2 cut(s) 191, 198
FatI CATG 2 cut(s) 352, 356
Fnu4HI GCNGC 3 cut(s) 235, 257, 281
FokI GGATG 3 cut(s) 32, 215, 225
Fsp4HI GCNGC 3 cut(s) 235, 257, 281
GlaI GCGC 1 cut(s) 28
GluI GCNGC 3 cut(s) 235, 257, 281
HaeII RGCGCY 1 cut(s) 30
HapII CCGG 2 cut(s) 39, 199
HgaI GACGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 2 cut(s) 356, 360
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HinfI GANTC 2 cut(s) 67, 84
HpaI GTTAAC 1 cut(s) 348
HpaII CCGG 2 cut(s) 39, 199
HphI GGTGA 2 cut(s) 158, 200
Hpy166II GTNNAC 3 cut(s) 83, 150, 348
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 2 cut(s) 62, 109
Hpy8I GTNNAC 3 cut(s) 83, 150, 348
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 163, 299
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 2 cut(s) 273, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 262
HpyF3I CTNAG 5 cut(s) 6, 50, 89, 217, 252
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 2 cut(s) 356, 360
HspAI GCGC 1 cut(s) 27
KspAI GTTAAC 1 cut(s) 348
LpnPI CCDG 9 cut(s) 52, 63, 195, 212, 222, 242, 262, 264, 322
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 1 cut(s) 282
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 92, 188
MboII GAAGA 1 cut(s) 62
MluCI AATT 1 cut(s) 310
MlyI GAGTC 1 cut(s) 78
MnlI CCTC 4 cut(s) 65, 98, 109, 252
Mph1103I ATGCAT 1 cut(s) 358
MseI TTAA 1 cut(s) 347
MslI CAYNNNNRTG 1 cut(s) 355
MspI CCGG 2 cut(s) 39, 199
MspR9I CCNGG 2 cut(s) 200, 210
MvaI CCWGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 2 cut(s) 35, 262
NciI CCSGG 1 cut(s) 200
NlaIII CATG 2 cut(s) 356, 360
NlaIV GGNNCC 2 cut(s) 43, 214
NmuCI GTSAC 2 cut(s) 92, 188
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 1 cut(s) 356
NspV TTCGAA 1 cut(s) 102
PfeI GAWTC 1 cut(s) 67
PflFI GACNNNGTC 1 cut(s) 194
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 3 cut(s) 236, 258, 282
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 43, 214
PspPI GGNCC 2 cut(s) 150, 212
PsyI GACNNNGTC 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 355
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 3 cut(s) 235, 257, 281
Sau96I GGNCC 2 cut(s) 150, 212
SchI GAGTC 1 cut(s) 78
ScrFI CCNGG 2 cut(s) 200, 210
SetI ASST 5 cut(s) 120, 155, 171, 195, 341
SfaNI GCATC 1 cut(s) 282
SfuI TTCGAA 1 cut(s) 102
SinI GGWCC 2 cut(s) 150, 212
SmiMI CAYNNNNRTG 1 cut(s) 355
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 1 cut(s) 310
SsiI CCGC 4 cut(s) 12, 17, 235, 257
StyD4I CCNGG 2 cut(s) 198, 208
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 147
TaiI ACGT 1 cut(s) 195
TaqI TCGA 3 cut(s) 102, 108, 156
TasI AATT 1 cut(s) 310
TauI GCSGC 2 cut(s) 237, 259
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TscAI CASTG 2 cut(s) 97, 150
TseFI GTSAC 2 cut(s) 92, 188
TseI GCWGC 1 cut(s) 280
Tsp45I GTSAC 2 cut(s) 92, 188
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 2 cut(s) 97, 150
Tth111I GACNNNGTC 1 cut(s) 194
VpaK11BI GGWCC 2 cut(s) 150, 212
XceI RCATGY 1 cut(s) 356
ZraI GACGTC 1 cut(s) 193
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.