Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Reverse (-)

68920132 .. 68920456

Gene Structure 325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG433300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAAACTCAAACCCGGATCAGAGGCGGATGTCCGCAAAGATGCAAAAGCGCGGATGTCGCTCAGAACGGTTCAGGGCGGGGAGGATGGTGGCGCTGATCTTACTGGTGCCGAACCAGGCCTCCATCTTGAGATTCTTCTTGTTGGTGGACTCCTCAGTGACGGGTTCGAAGTCGAAATTGGTTTGCTTGGAGTTTCTATTGAACTTCTGGCGCAAAGCTCCGACTTCGATCATATTGGCCCTCAACTTGATGGTGACGCCGTATGGGGTGTCCTTGGTCTCCGAGGACAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

98

Amino Acids

10.18

Weight (kDa)

4.46

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AccII	CGCG	1 cut(s)	52
AciI	CCGC	4 cut(s)	26, 34, 52, 78
AclWI	GGATC	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	1 cut(s)	219
AluI	AGCT	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	2 cut(s)	118, 238
AspLEI	GCGC	3 cut(s)	52, 95, 214
AspS9I	GGNCC	1 cut(s)	239
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	266
AsuII	TTCGAA	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	107
BccI	CCATC	3 cut(s)	80, 132, 245
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	284
BfoI	RGCGCY	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	15, 117
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	2 cut(s)	15, 117
BmsI	GCATC	1 cut(s)	31
Bpu14I	TTCGAA	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	274, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bse1I	ACTGG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	274, 283
BseGI	GGATG	3 cut(s)	34, 60, 91
BseMII	CTCAG	2 cut(s)	76, 169
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	2 cut(s)	120, 240
BshNI	GGYRCC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	120, 240
Bso31I	GGTCTC	1 cut(s)	284
Bsp119I	TTCGAA	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	17, 97, 229
BspACI	CCGC	4 cut(s)	26, 34, 52, 78
BspANI	GGCC	2 cut(s)	120, 240
BspCNI	CTCAG	2 cut(s)	75, 168
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	25
BspT104I	TTCGAA	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	274, 283
BssMI	GATC	3 cut(s)	17, 97, 229
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	258
BstBI	TTCGAA	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	62, 155
BstF5I	GGATG	3 cut(s)	34, 60, 91
BstFNI	CGCG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	3 cut(s)	52, 95, 214
BstKTI	GATC	3 cut(s)	20, 100, 232
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	3 cut(s)	17, 97, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	2 cut(s)	13, 115
BstUI	CGCG	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	120, 240
BtsCI	GGATG	3 cut(s)	34, 60, 91
BtsIMutI	CAGTG	1 cut(s)	163
CfoI	GCGC	3 cut(s)	52, 95, 214
Cfr13I	GGNCC	1 cut(s)	239
CseI	GACGC	1 cut(s)	266
CviJI	RGCY	3 cut(s)	120, 219, 240
CviKI_1	RGCY	3 cut(s)	120, 219, 240
DdeI	CTNAG	2 cut(s)	62, 155
DpnI	GATC	3 cut(s)	19, 99, 231
DpnII	GATC	3 cut(s)	17, 97, 229
EciI	GGCGGA	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	274
Eco147I	AGGCCT	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
FaiI	YATR	2 cut(s)	234, 265
FauI	CCCGC	1 cut(s)	71
FokI	GGATG	3 cut(s)	41, 67, 98
GlaI	GCGC	3 cut(s)	51, 94, 213
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	120, 240
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	3 cut(s)	52, 95, 214
Hin1I	GRCGYC	1 cut(s)	258
Hin6I	GCGC	3 cut(s)	50, 93, 212
HinP1I	GCGC	3 cut(s)	50, 93, 212
HinfI	GANTC	2 cut(s)	133, 150
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	4 cut(s)	22, 65, 223, 284
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	62, 155
Hsp92I	GRCGYC	1 cut(s)	258
HspAI	GCGC	3 cut(s)	50, 93, 212
Kzo9I	GATC	3 cut(s)	17, 97, 229
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	6 cut(s)	28, 59, 90, 102, 129, 194
LweI	GCATC	1 cut(s)	31
MaeIII	GTNAC	2 cut(s)	158, 254
MalI	GATC	3 cut(s)	19, 99, 231
MboI	GATC	3 cut(s)	17, 97, 229
MboII	GAAGA	1 cut(s)	128
MluCI	AATT	2 cut(s)	177, 292
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	6 cut(s)	16, 76, 131, 164, 252, 278
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	15, 117
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	58
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	3 cut(s)	17, 97, 229
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	158, 254
NspV	TTCGAA	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	239
Sau3AI	GATC	3 cut(s)	17, 97, 229
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	2 cut(s)	15, 117
SetI	ASST	1 cut(s)	221
SfaNI	GCATC	1 cut(s)	31
SfuI	TTCGAA	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	177, 292
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	4 cut(s)	26, 34, 52, 78
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	13, 115
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	3 cut(s)	168, 174, 228
TasI	AATT	2 cut(s)	177, 292
TfiI	GAWTC	1 cut(s)	133
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	2 cut(s)	158, 254
Tsp45I	GTSAC	2 cut(s)	158, 254
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.