Rh4CG269700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004849
Physical Location & Seq
Forward (+)
52390802 .. 52391671
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG269700.1

Sequence Viewer

Length: 783 bp
ATGCCGCCGAGTACTATCAGCCAATCTCCGCCGTTGATTCCAAAGATGACGACGAGGATCAGCATCTCCATTACCGCCATTGCCCTCTACCTCACCATCTCCGTCCTCCTCCAACTCCTCCTCGCCCTCCTCAGCTGCCCGGGCCGACCCATCCCTCTCAGACCTATCCCCACCCTCCGCTCCGTCCTCCTCCAACTCTTCCTCGCCCTCCTCCGCTGCCCGGGTCGACCCATCCCTCTCAAACCCATCCCCACCCTCCGCTCCGTCCTCCTCCAACTCCTCCTCGCCCTCCTCCGCTGCCCGGGTCGACCCATCCCTCTCAGACCCATCCCCACCCTCCGCTCCGTCCTCATCCAACTCTTCCTCGCCCTCCTCCGCTGCCCGGGTCGACCCATCCCTCTCAGACCTATCCCCACCCTCCGCTCCGTCCTCCTCCAACTCTTCCTCGCCCTCCTCCGCTGCCCGGGTCGACCCATCCCTCTCAAACCCATGCCCACCCTCCGCTCCGTCCTCCTCCAACTCTTCCTCGCCCTCCTCCGCTGTCCGGGTCGACCCATCCCTCTCAGACCCATCCCCACCCTCCGCTCCCTCCTCATGACCCTCCTCTCCTTCACCATCTTAGTCGGCATCAACCTCTTCCGGTGGTTCTTGCAGCGCTCCAAAACCCATGAAATTGATGGTGAGATTCAAATAGATTGGGATAGAGAAATGAAAGGGGAATCAAGGAAAACAAGATTGGAGGAAATTGAAAGGAGTGATGGATTTAGAAGGGAAAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

29.45

Weight (kDa)

11.71

Isoelectric Point (pI)

73.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 6 cut(s) 180, 261, 342, 423, 504, 585
AccI GTMKAC 5 cut(s) 226, 307, 388, 469, 550
AclWI GGATC 1 cut(s) 65
AfaI GTAC 1 cut(s) 13
AfeI AGCGCT 1 cut(s) 656
AfiI CCNNNNNNNGG 5 cut(s) 220, 301, 382, 463, 544
AgsI TTSAA 2 cut(s) 689, 749
AjuI GAANNNNNNNTTGG 2 cut(s) 719, 751
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
AlwI GGATC 1 cut(s) 65
Ama87I CYCGRG 5 cut(s) 139, 220, 301, 382, 463
Aor51HI AGCGCT 1 cut(s) 656
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 6 cut(s) 135, 216, 297, 378, 459, 652
AspLEI GCGC 1 cut(s) 657
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 3 cut(s) 85, 604, 692
AvaI CYCGRG 5 cut(s) 139, 220, 301, 382, 463
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 6 cut(s) 122, 203, 284, 365, 446, 664
BceAI ACGGC 1 cut(s) 16
BfoI RGCGCY 1 cut(s) 658
BisI GCNGC 7 cut(s) 5, 136, 217, 298, 379, 460, 653
BlsI GCNGC 7 cut(s) 6, 137, 218, 299, 380, 461, 654
BmcAI AGTACT 1 cut(s) 13
BmeT110I CYCGRG 5 cut(s) 139, 220, 301, 382, 463
BmgT120I GGNCC 1 cut(s) 142
BmsI GCATC 2 cut(s) 72, 636
Bpu10I CCTNAGC 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 62
BsaJI CCNNGG 5 cut(s) 139, 220, 301, 382, 463
BsaWI WCCGGW 1 cut(s) 639
Bsc4I CCNNNNNNNGG 5 cut(s) 220, 301, 382, 463, 544
Bse3DI GCAATG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 62
BseDI CCNNGG 5 cut(s) 139, 220, 301, 382, 463
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 5 cut(s) 220, 301, 382, 463, 544
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 5 cut(s) 145, 172, 334, 415, 577
BseXI GCAGC 6 cut(s) 122, 203, 284, 365, 446, 664
BshFI GGCC 1 cut(s) 144
BsiHKCI CYCGRG 5 cut(s) 139, 220, 301, 382, 463
BsiSI CCGG 7 cut(s) 140, 221, 302, 383, 464, 545, 640
BslI CCNNNNNNNGG 5 cut(s) 220, 301, 382, 463, 544
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 5 cut(s) 139, 220, 301, 382, 463
Bsp143I GATC 1 cut(s) 57
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 5 cut(s) 144, 171, 333, 414, 576
BspHI TCATGA 1 cut(s) 594
BspPI GGATC 1 cut(s) 65
BsrBI CCGCTC 6 cut(s) 180, 261, 342, 423, 504, 585
BsrDI GCAATG 1 cut(s) 78
BssECI CCNNGG 5 cut(s) 139, 220, 301, 382, 463
BssMI GATC 1 cut(s) 57
Bst6I CTCTTC 5 cut(s) 203, 365, 446, 527, 641
BstDEI CTNAG 6 cut(s) 131, 158, 320, 401, 563, 619
BstH2I RGCGCY 1 cut(s) 658
BstHHI GCGC 1 cut(s) 657
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstV1I GCAGC 6 cut(s) 122, 203, 284, 365, 446, 664
BsuRI GGCC 1 cut(s) 144
CciI TCATGA 1 cut(s) 594
CfoI GCGC 1 cut(s) 657
Cfr13I GGNCC 1 cut(s) 142
Cfr9I CCCGGG 5 cut(s) 139, 220, 301, 382, 463
Csp6I GTAC 1 cut(s) 12
CviAII CATG 3 cut(s) 490, 595, 668
CviJI RGCY 3 cut(s) 21, 135, 144
CviKI_1 RGCY 3 cut(s) 21, 135, 144
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 6 cut(s) 131, 158, 320, 401, 563, 619
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eam1104I CTCTTC 5 cut(s) 203, 365, 446, 527, 641
EarI CTCTTC 5 cut(s) 203, 365, 446, 527, 641
EciI GGCGGA 1 cut(s) 18
Eco47III AGCGCT 1 cut(s) 656
Eco88I CYCGRG 5 cut(s) 139, 220, 301, 382, 463
FaeI CATG 3 cut(s) 493, 598, 671
FaiI YATR 3 cut(s) 491, 596, 669
FatI CATG 3 cut(s) 489, 594, 667
FblI GTMKAC 5 cut(s) 226, 307, 388, 469, 550
Fnu4HI GCNGC 7 cut(s) 5, 136, 217, 298, 379, 460, 653
Fsp4HI GCNGC 7 cut(s) 5, 136, 217, 298, 379, 460, 653
GlaI GCGC 1 cut(s) 656
GluI GCNGC 7 cut(s) 5, 136, 217, 298, 379, 460, 653
HaeII RGCGCY 1 cut(s) 658
HaeIII GGCC 1 cut(s) 144
HapII CCGG 7 cut(s) 140, 221, 302, 383, 464, 545, 640
HhaI GCGC 1 cut(s) 657
Hin1II CATG 3 cut(s) 493, 598, 671
Hin6I GCGC 1 cut(s) 655
HinP1I GCGC 1 cut(s) 655
HincII GTYRAC 5 cut(s) 227, 308, 389, 470, 551
HindII GTYRAC 5 cut(s) 227, 308, 389, 470, 551
HinfI GANTC 3 cut(s) 37, 685, 719
HpaII CCGG 7 cut(s) 140, 221, 302, 383, 464, 545, 640
HphI GGTGA 3 cut(s) 85, 604, 692
Hpy166II GTNNAC 5 cut(s) 227, 308, 389, 470, 551
Hpy188I TCNGA 4 cut(s) 161, 323, 404, 566
Hpy188III TCNNGA 1 cut(s) 595
Hpy8I GTNNAC 5 cut(s) 227, 308, 389, 470, 551
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 619, 762
HpyCH4V TGCA 1 cut(s) 652
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 6 cut(s) 131, 158, 320, 401, 563, 619
Hsp92II CATG 3 cut(s) 493, 598, 671
HspAI GCGC 1 cut(s) 655
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 7 cut(s) 185, 266, 347, 428, 509, 590, 662
LpnPI CCDG 7 cut(s) 153, 234, 315, 396, 477, 558, 653
Lsp1109I GCAGC 6 cut(s) 122, 203, 284, 365, 446, 664
LweI GCATC 2 cut(s) 72, 636
MalI GATC 1 cut(s) 59
MbiI CCGCTC 6 cut(s) 180, 261, 342, 423, 504, 585
MboI GATC 1 cut(s) 57
MboII GAAGA 5 cut(s) 190, 352, 433, 514, 628
MluCI AATT 3 cut(s) 672, 744, 778
MmeI TCCRAC 6 cut(s) 136, 217, 298, 379, 460, 541
MspA1I CMGCKG 6 cut(s) 135, 216, 297, 378, 459, 540
MspI CCGG 7 cut(s) 140, 221, 302, 383, 464, 545, 640
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeII GATC 1 cut(s) 57
NlaIII CATG 3 cut(s) 493, 598, 671
NmeAIII GCCGAG 1 cut(s) 33
PagI TCATGA 1 cut(s) 594
PfeI GAWTC 3 cut(s) 37, 685, 719
PkrI GCNGC 7 cut(s) 6, 137, 218, 299, 380, 461, 654
PspPI GGNCC 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 135
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SalI GTCGAC 5 cut(s) 225, 306, 387, 468, 549
SatI GCNGC 7 cut(s) 5, 136, 217, 298, 379, 460, 653
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 142
ScaI AGTACT 1 cut(s) 13
SetI ASST 5 cut(s) 93, 137, 166, 409, 636
SfaNI GCATC 2 cut(s) 72, 636
SmaI CCCGGG 5 cut(s) 141, 222, 303, 384, 465
SrfI GCCCGGGC 1 cut(s) 141
Sse9I AATT 3 cut(s) 672, 744, 778
TaqI TCGA 5 cut(s) 226, 307, 388, 469, 550
TasI AATT 3 cut(s) 672, 744, 778
TatI WGTACW 1 cut(s) 11
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 3 cut(s) 37, 685, 719
TseI GCWGC 6 cut(s) 135, 216, 297, 378, 459, 652
TspDTI ATGAA 2 cut(s) 684, 725
TspGWI ACGGA 6 cut(s) 91, 172, 253, 334, 415, 496
TspMI CCCGGG 5 cut(s) 139, 220, 301, 382, 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 674
XmaI CCCGGG 5 cut(s) 139, 220, 301, 382, 463
XmiI GTMKAC 5 cut(s) 226, 307, 388, 469, 550
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.