Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002563.1

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Reverse (-)

259026 .. 259508

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002563.1_g000070.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgcccaatgagactgcagtaaagtcttttcgtgttcgccatcattgggatgccaggggaaaatttgtaccaaaagaaattcctaaagtgatgcctgtctttctcaagaagaactgtaaattcctaaacttcctaaagcacaggacctccagctacaagccgcatgaaagtgatgcttgtcgtggtcttttcaaggaagaagtgtctatgaactctgatctagactcgcagatagacaagatcgcccatagcgccgctggcgacactactgaccctgatgagttcgatcctctccccatccccgagggtgctagtgttgaggagcagctcaatatcttgaagatcaacagcgctaaatataagaagcagctggccagttctatcgcgaaaacagagcagcgtctgcgcgatttggaccaacgcattgaccaaaatgctccagaagctagagagcgcgaaatcacaaaagcttttctcgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.34

Weight (kDa)

7.78

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	386, 408, 456
AciI	CCGC	2 cut(s)	161, 255
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	3 cut(s)	62, 78, 119
AfaI	GTAC	1 cut(s)	69
AfeI	AGCGCT	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	193, 340
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	5 cut(s)	153, 328, 370, 446, 470
AluI	AGCT	5 cut(s)	153, 328, 370, 446, 470
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	281
AlwNI	CAGNNNCTG	1 cut(s)	403
Ama87I	CYCGRG	2 cut(s)	302, 476
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	3 cut(s)	325, 367, 397
ApoI	RAATTY	3 cut(s)	62, 78, 119
AspLEI	GCGC	4 cut(s)	254, 353, 408, 456
AspS9I	GGNCC	2 cut(s)	144, 415
AvaI	CYCGRG	2 cut(s)	302, 476
AvaII	GGWCC	2 cut(s)	144, 415
BalI	TGGCCA	1 cut(s)	374
BbvI	GCAGC	3 cut(s)	337, 379, 409
BccI	CCATC	2 cut(s)	48, 305
BciT130I	CCWGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	3 cut(s)	221, 312, 447
BfmI	CTRYAG	1 cut(s)	15
BfoI	RGCGCY	2 cut(s)	255, 354
BisI	GCNGC	5 cut(s)	161, 255, 326, 368, 398
BlsI	GCNGC	5 cut(s)	162, 256, 327, 369, 399
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	144, 415
BmeT110I	CYCGRG	2 cut(s)	302, 476
BmgT120I	GGNCC	2 cut(s)	144, 415
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	3 cut(s)	40, 81, 163
BpmI	CTGGAG	2 cut(s)	133, 423
BpuEI	CTTGAG	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	54, 303
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	2 cut(s)	54, 303
BseGI	GGATG	2 cut(s)	55, 297
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	3 cut(s)	337, 379, 409
Bsh1236I	CGCG	3 cut(s)	386, 408, 456
BshFI	GGCC	1 cut(s)	374
BsiHKCI	CYCGRG	2 cut(s)	302, 476
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	374
BsoBI	CYCGRG	2 cut(s)	302, 476
Bsp143I	GATC	4 cut(s)	217, 240, 286, 342
Bsp68I	TCGCGA	1 cut(s)	386
BspACI	CCGC	2 cut(s)	161, 255
BspANI	GGCC	1 cut(s)	374
BspFNI	CGCG	3 cut(s)	386, 408, 456
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	2 cut(s)	54, 303
BssMI	GATC	4 cut(s)	217, 240, 286, 342
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	259, 372
BstF5I	GGATG	2 cut(s)	55, 297
BstFNI	CGCG	3 cut(s)	386, 408, 456
BstH2I	RGCGCY	2 cut(s)	255, 354
BstHHI	GCGC	4 cut(s)	254, 353, 408, 456
BstKTI	GATC	4 cut(s)	220, 243, 289, 345
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	4 cut(s)	217, 240, 286, 342
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 258, 403, 443
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	15
BstUI	CGCG	3 cut(s)	386, 408, 456
BstV1I	GCAGC	3 cut(s)	337, 379, 409
BsuRI	GGCC	1 cut(s)	374
BtsCI	GGATG	2 cut(s)	55, 297
BtuMI	TCGCGA	1 cut(s)	386
Cac8I	GCNNGC	2 cut(s)	259, 372
CaiI	CAGNNNCTG	1 cut(s)	403
CfoI	GCGC	4 cut(s)	254, 353, 408, 456
Cfr13I	GGNCC	2 cut(s)	144, 415
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	7 cut(s)	153, 160, 328, 370, 374, 446, 470
CviKI_1	RGCY	7 cut(s)	153, 160, 328, 370, 374, 446, 470
CviQI	GTAC	1 cut(s)	68
DpnI	GATC	4 cut(s)	219, 242, 288, 344
DpnII	GATC	4 cut(s)	217, 240, 286, 342
EaeI	YGGCCR	1 cut(s)	372
Eco47I	GGWCC	2 cut(s)	144, 415
Eco47III	AGCGCT	1 cut(s)	352
Eco88I	CYCGRG	2 cut(s)	302, 476
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	53
FaeI	CATG	1 cut(s)	167
FaiI	YATR	4 cut(s)	165, 209, 249, 360
FalI	AAGNNNNNCTT	2 cut(s)	160, 192
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	5 cut(s)	161, 255, 326, 368, 398
FokI	GGATG	2 cut(s)	62, 284
Fsp4HI	GCNGC	5 cut(s)	161, 255, 326, 368, 398
FspBI	CTAG	3 cut(s)	221, 312, 447
GlaI	GCGC	4 cut(s)	253, 352, 407, 455
GluI	GCNGC	5 cut(s)	161, 255, 326, 368, 398
GsuI	CTGGAG	2 cut(s)	133, 423
HaeII	RGCGCY	2 cut(s)	255, 354
HaeIII	GGCC	1 cut(s)	374
HgaI	GACGC	1 cut(s)	389
HhaI	GCGC	4 cut(s)	254, 353, 408, 456
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	4 cut(s)	252, 351, 406, 454
HinP1I	GCGC	4 cut(s)	252, 351, 406, 454
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	6 cut(s)	106, 221, 337, 385, 440, 476
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 258, 403, 443
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	4 cut(s)	252, 351, 406, 454
Kzo9I	GATC	4 cut(s)	217, 240, 286, 342
LmnI	GCTCC	2 cut(s)	322, 442
Lsp1109I	GCAGC	3 cut(s)	337, 379, 409
LweI	GCATC	3 cut(s)	40, 81, 163
MaeI	CTAG	3 cut(s)	221, 312, 447
MalI	GATC	4 cut(s)	219, 242, 288, 344
MboI	GATC	4 cut(s)	217, 240, 286, 342
MboII	GAAGA	3 cut(s)	121, 209, 352
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	3 cut(s)	62, 78, 119
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	4 cut(s)	157, 298, 300, 313
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MslI	CAYNNNNRTG	2 cut(s)	48, 168
Msp20I	TGGCCA	1 cut(s)	374
MspA1I	CMGCKG	2 cut(s)	257, 370
MspR9I	CCNGG	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	55
MvnI	CGCG	3 cut(s)	386, 408, 456
MwoI	GCNNNNNNNGC	4 cut(s)	251, 258, 403, 443
NdeII	GATC	4 cut(s)	217, 240, 286, 342
NlaIII	CATG	1 cut(s)	167
NruI	TCGCGA	1 cut(s)	386
PaeR7I	CTCGAG	1 cut(s)	476
PkrI	GCNGC	5 cut(s)	162, 256, 327, 369, 399
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PspPI	GGNCC	2 cut(s)	144, 415
PspPPI	RGGWCCY	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	370
RruI	TCGCGA	1 cut(s)	386
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
RseI	CAYNNNNRTG	2 cut(s)	48, 168
SatI	GCNGC	5 cut(s)	161, 255, 326, 368, 398
Sau3AI	GATC	4 cut(s)	217, 240, 286, 342
Sau96I	GGNCC	2 cut(s)	144, 415
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	6 cut(s)	149, 155, 330, 372, 448, 472
SfaNI	GCATC	3 cut(s)	40, 81, 163
SfcI	CTRYAG	1 cut(s)	15
Sfr274I	CTCGAG	1 cut(s)	476
SinI	GGWCC	2 cut(s)	144, 415
SlaI	CTCGAG	1 cut(s)	476
SmiMI	CAYNNNNRTG	2 cut(s)	48, 168
SmlI	CTYRAG	2 cut(s)	104, 476
SmoI	CTYRAG	2 cut(s)	104, 476
Sse9I	AATT	3 cut(s)	62, 78, 119
SsiI	CCGC	2 cut(s)	161, 255
SspMI	CTAG	3 cut(s)	221, 312, 447
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	116
TaqI	TCGA	2 cut(s)	285, 477
TasI	AATT	3 cut(s)	62, 78, 119
TauI	GCSGC	2 cut(s)	163, 257
TseI	GCWGC	3 cut(s)	325, 367, 397
TspDTI	ATGAA	2 cut(s)	180, 224
VpaK11BI	GGWCC	2 cut(s)	144, 415
XapI	RAATTY	3 cut(s)	62, 78, 119
XbaI	TCTAGA	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XhoI	CTCGAG	1 cut(s)	476
XspI	CTAG	3 cut(s)	221, 312, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.