Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Reverse (-)

11621864 .. 11622687

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG124400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGATTAAGACAACAAAAGAAGAAGAATCAAGCTTGAATCCCGACACCACCGAGTCTCCCCCGTCGATTCCGAAGACGACTACAAGGATCGGCATCTCCATTACTGCCATTGCCCTCTACCTCTCCATCTTCGTCCTCCTCCACCTCCTCCTCGCCCTCCTCTACTACCTGGGTCGACCCGTCCCTCTCGGACCTATCCCAGCCCTCCGCTCCCTCCTCATGACCCTCCTCTCCTTCACCATCTTCGTCGGCATCAACCTCTTCCGTTGGTTCTTGCGGCGCTCCAAAACCCATGAAATTGATTGTGAGATTCAAATAGATTGGGATAGAGAAATGAGAGGGGAATCAAGGAAAACAAGATCGGAGGAAATTGATAGGAATGATGGATTTGGAAGGAAAAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009922 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0032870 GO:0033993 GO:0034625 GO:0034626 GO:0042175 GO:0042221 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0050896 GO:0051716 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0072330 GO:0097305 GO:0097306 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

135

Amino Acids

15.53

Weight (kDa)

9.2

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	175
AciI	CCGC	2 cut(s)	208, 277
AclWI	GGATC	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	37, 314
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	80
BccI	CCATC	3 cut(s)	134, 248, 377
BciT130I	CCWGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	283
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	102, 261
BpiI	GAAGAC	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bse3DI	GCAATG	1 cut(s)	108
Bse8I	GATNNNNATC	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	108
BseRI	GAGGAG	6 cut(s)	128, 137, 140, 149, 206, 218
BseYI	CCCAGC	1 cut(s)	199
BslFI	GGGAC	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	87, 359
BspACI	CCGC	2 cut(s)	208, 277
BspHI	TCATGA	1 cut(s)	219
BspPI	GGATC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	2 cut(s)	87, 359
Bst2UI	CCWGG	1 cut(s)	170
Bst6I	CTCTTC	1 cut(s)	266
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	2 cut(s)	90, 362
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	2 cut(s)	87, 359
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	80
CciI	TCATGA	1 cut(s)	219
CfoI	GCGC	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	191
CviAII	CATG	2 cut(s)	220, 293
CviJI	RGCY	2 cut(s)	33, 203
CviKI_1	RGCY	2 cut(s)	33, 203
DpnI	GATC	2 cut(s)	89, 361
DpnII	GATC	2 cut(s)	87, 359
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	168
FaeI	CATG	2 cut(s)	223, 296
FaiI	YATR	2 cut(s)	221, 294
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	2 cut(s)	219, 292
FblI	GTMKAC	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	278
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	1 cut(s)	278
GsaI	CCCAGC	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	283
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	223, 296
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HincII	GTYRAC	1 cut(s)	176
HindII	GTYRAC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	6 cut(s)	26, 37, 53, 67, 310, 344
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	3 cut(s)	72, 191, 364
Hpy188III	TCNNGA	2 cut(s)	41, 220
Hpy8I	GTNNAC	1 cut(s)	176
Hpy99I	CGWCG	2 cut(s)	67, 251
HpyAV	CCTTC	2 cut(s)	244, 387
Hsp92II	CATG	2 cut(s)	223, 296
HspAI	GCGC	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	87, 359
LmnI	GCTCC	2 cut(s)	215, 287
LpnPI	CCDG	3 cut(s)	155, 182, 213
LweI	GCATC	2 cut(s)	102, 261
MalI	GATC	2 cut(s)	89, 361
MbiI	CCGCTC	1 cut(s)	210
MboI	GATC	2 cut(s)	87, 359
MboII	GAAGA	6 cut(s)	32, 35, 85, 121, 235, 253
MluCI	AATT	2 cut(s)	297, 369
MlyI	GAGTC	1 cut(s)	62
MseI	TTAA	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	87, 359
NlaIII	CATG	2 cut(s)	223, 296
PagI	TCATGA	1 cut(s)	219
PfeI	GAWTC	5 cut(s)	26, 37, 67, 310, 344
PkrI	GCNGC	1 cut(s)	279
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	191
SalI	GTCGAC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	2 cut(s)	87, 359
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	6 cut(s)	35, 123, 147, 171, 196, 261
SfaNI	GCATC	2 cut(s)	102, 261
SinI	GGWCC	1 cut(s)	191
Sse9I	AATT	2 cut(s)	297, 369
SsiI	CCGC	2 cut(s)	208, 277
StyD4I	CCNGG	1 cut(s)	168
TaqI	TCGA	2 cut(s)	65, 175
TasI	AATT	2 cut(s)	297, 369
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	5 cut(s)	26, 37, 67, 310, 344
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.