Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004849

Physical Location & Seq

Genomic Coordinates Forward (+)

13719838 .. 13720656

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17518

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCCGCCGAGTACTATCAGCCAATCTCCGCCATTGATTCCAAAGATGACGACGAGGATCAGCATTTCCATTACCGCCATTGCCCTCTACCTCACCATCTCTGTCCTCCTCCAACTCCTCCTCGCCCTCCTCCGCTGCCCAGGTCGACCTAACCCTCACAGACCTATCCCCACCCTCCGCTCCGTCCTCCTCCAACTCCTCCGCTGCCCCGGTCGACCCATCCCTCTCAGACCTATCCCCACCCTCCGCTCCCTCCTCATGACCCTCCTCTCCTTCACCATCTTAGTCGGCATCAACCTCTTCCACTGGTTCTTGCAGCGCTCCAAAACCCATGAAGTTGATGGTGAGATTCAAATAGATTGGGATACAGAAATGAAATGGGAATCAAGGAAAACAAGGTTGGAGGAAATTGAAAGGAGTGATGGATTTGGAAGGGAAAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.97

Weight (kDa)

10.26

Isoelectric Point (pI)

66.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004849)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28630
rosa_chinensis	RchiOBHm_Chr7g0195851
rosa_laevigata	RLG00000012332 RLG00000021565
rosa_multiflora	Rmu_co8209098.1_g000002 Rmu_sc0001551.1_g000016 Rmu_sc0002187.1_g000063 Rmu_sc0002187.1_g000066 Rmu_sc0002563.1_g000070 Rmu_sc0002717.1_g000010 Rmu_sc0003679.1_g000003 Rmu_sc0005003.1_g000005 Rmu_sc0005044.1_g000021 Rmu_sc0005044.1_g000023 Rmu_sc0005392.1_g000004 Rmu_sc0008245.1_g000018 Rmu_sc0008382.1_g000004 Rmu_sc0009227.1_g000002 Rmu_sc0017888.1_g000005
rosa_roxburghii	Rroxscaffold_176G00430960 Rroxscaffold_1G00004060 Rroxscaffold_6G00395070
rosa_samantha	Rh1CG420700 Rh1CG433300 Rh1DG437400 Rh2DG297400 Rh3AG107900 Rh3CG113700 Rh4CG269700 Rh5AG124400 Rh6AG162600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	180, 249
AccI	GTMKAC	2 cut(s)	145, 214
AciI	CCGC	7 cut(s)	5, 29, 75, 133, 178, 202, 247
AclWI	GGATC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	13
AfeI	AGCGCT	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	353, 413
AjnI	CCWGG	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AlwI	GGATC	1 cut(s)	65
Aor51HI	AGCGCT	1 cut(s)	320
ApeKI	GCWGC	3 cut(s)	135, 204, 316
AspLEI	GCGC	1 cut(s)	321
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	3 cut(s)	85, 268, 356
BbvI	GCAGC	3 cut(s)	122, 191, 328
BccI	CCATC	5 cut(s)	104, 227, 287, 335, 416
BciT130I	CCWGG	1 cut(s)	141
BciVI	GTATCC	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	322
BfuI	GTATCC	1 cut(s)	358
BisI	GCNGC	4 cut(s)	5, 136, 205, 317
BlsI	GCNGC	4 cut(s)	6, 137, 206, 318
BmcAI	AGTACT	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	141, 210
BmrFI	CCNGG	2 cut(s)	141, 210
BmsI	GCATC	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	139, 208
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	139, 208
BseGI	GGATG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	8 cut(s)	98, 107, 110, 119, 179, 188, 245, 257
BseXI	GCAGC	3 cut(s)	122, 191, 328
Bsh1285I	CGRYCG	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	7 cut(s)	5, 29, 75, 133, 178, 202, 247
BspCNI	CTCAG	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	258
BspPI	GGATC	1 cut(s)	65
BsrBI	CCGCTC	2 cut(s)	180, 249
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	2 cut(s)	139, 208
BssMI	GATC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	305
BstDEI	CTNAG	2 cut(s)	227, 283
BstF5I	GGATG	1 cut(s)	219
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstMCI	CGRYCG	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	139, 208
BstV1I	GCAGC	3 cut(s)	122, 191, 328
BsuI	GTATCC	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	304
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	2 cut(s)	259, 332
CviJI	RGCY	1 cut(s)	21
CviKI_1	RGCY	1 cut(s)	21
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	2 cut(s)	227, 283
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EciI	GGCGGA	1 cut(s)	18
Eco47III	AGCGCT	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	139
FaeI	CATG	2 cut(s)	262, 335
FaiI	YATR	2 cut(s)	260, 333
FatI	CATG	2 cut(s)	258, 331
FblI	GTMKAC	2 cut(s)	145, 214
Fnu4HI	GCNGC	4 cut(s)	5, 136, 205, 317
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	4 cut(s)	5, 136, 205, 317
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	4 cut(s)	5, 136, 205, 317
HaeII	RGCGCY	1 cut(s)	322
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	262, 335
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	2 cut(s)	146, 215
HindII	GTYRAC	2 cut(s)	146, 215
HinfI	GANTC	3 cut(s)	37, 349, 383
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	3 cut(s)	85, 268, 356
Hpy166II	GTNNAC	2 cut(s)	146, 215
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	1 cut(s)	259
Hpy8I	GTNNAC	2 cut(s)	146, 215
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	283, 426
HpyCH4V	TGCA	1 cut(s)	316
HpyF3I	CTNAG	2 cut(s)	227, 283
Hsp92II	CATG	2 cut(s)	262, 335
HspAI	GCGC	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	3 cut(s)	185, 254, 326
LpnPI	CCDG	4 cut(s)	126, 153, 223, 292
Lsp1109I	GCAGC	3 cut(s)	122, 191, 328
LweI	GCATC	1 cut(s)	300
MalI	GATC	1 cut(s)	59
MbiI	CCGCTC	2 cut(s)	180, 249
MboI	GATC	1 cut(s)	57
MboII	GAAGA	1 cut(s)	292
MluCI	AATT	2 cut(s)	408, 442
MmeI	TCCRAC	3 cut(s)	136, 217, 381
MspA1I	CMGCKG	2 cut(s)	135, 204
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	2 cut(s)	141, 210
MvaI	CCWGG	1 cut(s)	141
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	57
NlaIII	CATG	2 cut(s)	262, 335
NmeAIII	GCCGAG	1 cut(s)	33
PagI	TCATGA	1 cut(s)	258
PfeI	GAWTC	3 cut(s)	37, 349, 383
PkrI	GCNGC	4 cut(s)	6, 137, 206, 318
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SalI	GTCGAC	2 cut(s)	144, 213
SatI	GCNGC	4 cut(s)	5, 136, 205, 317
Sau3AI	GATC	1 cut(s)	57
ScaI	AGTACT	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	141, 210
SetI	ASST	7 cut(s)	93, 145, 151, 166, 235, 300, 401
SfaNI	GCATC	1 cut(s)	300
Sse9I	AATT	2 cut(s)	408, 442
SsiI	CCGC	7 cut(s)	5, 29, 75, 133, 178, 202, 247
StyD4I	CCNGG	2 cut(s)	139, 208
TaqI	TCGA	2 cut(s)	145, 214
TasI	AATT	2 cut(s)	408, 442
TatI	WGTACW	1 cut(s)	11
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	37, 349, 383
TscAI	CASTG	1 cut(s)	311
TseI	GCWGC	3 cut(s)	135, 204, 316
TspDTI	ATGAA	2 cut(s)	348, 389
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmiI	GTMKAC	2 cut(s)	145, 214
ZrmI	AGTACT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.